RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 CCL11P51671 97 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 AQP4P55087 323 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 KCNK10P57789 538 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 PPP3R1P63098 170 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 DCDP81605 110 aaKnown RBP1.39□□□□□ -2.19
NUP54-208ENST00000508604 MRPS10P82664 201 aaKnown RBP1.39□□□□□ -2.19
NUP54-208ENST00000508604 RPL19P84098 196 aaKnown RBP1.39□□□□□ -2.19
NUP54-208ENST00000508604 IL5RAQ01344 420 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 BDH1Q02338 343 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 SLC10A7Q0GE19 358 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 BST1Q10588 318 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 FUT7Q11130 342 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 EXOSC7Q15024 291 aaKnown RBP1.39□□□□□ -2.19
NUP54-208ENST00000508604 QPRTQ15274 297 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 NDUFA9Q16795 377 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 DGUOKQ16854 277 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 ZNF699Q32M78 642 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 PGGHGQ32M88 737 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 SMIM21Q3B7S5 101 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 SLC36A2Q495M3 483 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 COX19Q49B96 90 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 VPS26BQ4G0F5 336 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 SFT2D3Q587I9 215 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 TMEM41BQ5BJD5 291 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 Q5BKY6 102 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 RAET1LQ5VY80 246 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 NCR3LG1Q68D85 454 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 KDM4DQ6B0I6 523 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 OR4F3Q6IEY1 312 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 FAM71E1Q6IPT2 247 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 REEP3Q6NUK4 255 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 HAGHLQ6PII5 290 aaPredicted RBP1.39□□□□□ -2.19
NUP54-208ENST00000508604 B3GLCTQ6Y288 498 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 IL34Q6ZMJ4 242 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 ZNF836Q6ZNA1 936 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 RANBP3LQ86VV4 465 aaPredicted RBP1.39□□□□□ -2.19
NUP54-208ENST00000508604 UNC93AQ86WB7 457 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 WDFY1Q8IWB7 410 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 NRMQ8IXM6 262 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 HS3ST5Q8IZT8 346 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 DAW1Q8N136 415 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 ACBD7Q8N6N7 88 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 TMEM185AQ8NFB2 350 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 PXT1Q8NFP0 134 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 OR11H1Q8NG94 326 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 OR4M1Q8NGD0 313 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 OR10W1Q8NGF6 305 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 OR5T3Q8NGG3 340 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 OR5L1Q8NGL2 311 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 OR4A15Q8NGL6 344 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 OR11H2Q8NH07 326 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 OR4C6Q8NH72 309 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 RFESDQ8TAC1 157 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 TRMT10AQ8TBZ6 339 aaKnown RBP1.39□□□□□ -2.19
NUP54-208ENST00000508604 SLC7A6Q92536 515 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 GHSRQ92847 366 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 RAB39BQ96DA2 213 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 CMBLQ96DG6 245 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 CMTM7Q96FZ5 175 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 CERS2Q96G23 380 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 CELF6Q96J87 481 aaKnown RBP1.39□□□□□ -2.19
NUP54-208ENST00000508604 BTN2A3PQ96KV6 586 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 SENP8Q96LD8 212 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 COL21A1Q96P44 957 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 OR2M2Q96R28 347 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 CNN2Q99439 309 aaKnown RBP1.39□□□□□ -2.19
NUP54-208ENST00000508604 VAT1Q99536 393 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 FUNDC2Q9BWH2 189 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 BEX2Q9BXY8 128 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 ZNF436Q9C0F3 470 aaPredicted RBP1.39□□□□□ -2.19
NUP54-208ENST00000508604 ROGDIQ9GZN7 287 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 SIRPDQ9H106 197 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 PORCNQ9H237 461 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 ARV1Q9H2C2 271 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 DHX35Q9H5Z1 703 aaKnown RBP1.39□□□□□ -2.19
NUP54-208ENST00000508604 CLMPQ9H6B4 373 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 TMEM38AQ9H6F2 299 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 WDR54Q9H977 334 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 RNF122Q9H9V4 155 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 CXorf21Q9HAI6 301 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 RHOFQ9HBH0 211 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 ZNF160Q9HCG1 818 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 SLC2A9Q9NRM0 540 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 PAK1IP1Q9NWT1 392 aaPredicted RBP1.39□□□□□ -2.19
NUP54-208ENST00000508604 AHSPQ9NZD4 102 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 ADA2Q9NZK5 511 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 SLC2A6Q9UGQ3 507 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 PCYOX1Q9UHG3 505 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 GNG8Q9UK08 70 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 DKKL1Q9UK85 242 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 PITPNC1Q9UKF7 332 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 SNX12Q9UMY4 172 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 ING4Q9UNL4 249 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 ANGPT4Q9Y264 503 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 RASD1Q9Y272 281 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 GSTK1Q9Y2Q3 226 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 ATG4BQ9Y4P1 393 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 MTCH2Q9Y6C9 303 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 URGCP-MRPS24S4R325 110 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 KDM5AP29375 1690 aaKnown RBP1.38□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms