RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 CYTIPO60759 359 aa10.49□□□□□ -0.73
NUP54-202ENST00000502850 FARS2O95363 451 aaKnown RBP10.49□□□□□ -0.73
NUP54-202ENST00000502850 CFDP00746 253 aaPredicted RBP10.49□□□□□ -0.73
NUP54-202ENST00000502850 FPR2P25090 351 aa10.49□□□□□ -0.73
NUP54-202ENST00000502850 GDF1P27539 372 aa10.49□□□□□ -0.73
NUP54-202ENST00000502850 Q0VFX4 171 aa10.49□□□□□ -0.73
NUP54-202ENST00000502850 PPP1R1AQ13522 171 aa10.49□□□□□ -0.73
NUP54-202ENST00000502850 SURF2Q15527 256 aaPredicted RBP10.49□□□□□ -0.73
NUP54-202ENST00000502850 TMEM128Q5BJH2 165 aa10.49□□□□□ -0.73
NUP54-202ENST00000502850 PLAC9Q5JTB6 97 aa10.49□□□□□ -0.73
NUP54-202ENST00000502850 ZNF546Q86UE3 836 aa10.49□□□□□ -0.73
NUP54-202ENST00000502850 OR10D3Q8NH80 312 aa10.49□□□□□ -0.73
NUP54-202ENST00000502850 FAM173AQ9BQD7 235 aa10.49□□□□□ -0.73
NUP54-202ENST00000502850 SOX7Q9BT81 388 aa10.49□□□□□ -0.73
NUP54-202ENST00000502850 BANF2Q9H503 90 aa10.49□□□□□ -0.73
NUP54-202ENST00000502850 PFDN2Q9UHV9 154 aa10.49□□□□□ -0.73
NUP54-202ENST00000502850 ATPIF1Q9UII2 106 aa10.49□□□□□ -0.73
NUP54-202ENST00000502850 TIMM10BQ9Y5J6 103 aa10.49□□□□□ -0.73
NUP54-202ENST00000502850 KANTRA0A1W2PQU2 76 aa10.48□□□□□ -0.73
NUP54-202ENST00000502850 STMND1H3BQB6 276 aa10.48□□□□□ -0.73
NUP54-202ENST00000502850 SOCS1O15524 211 aa10.48□□□□□ -0.73
NUP54-202ENST00000502850 SYNGR3O43761 229 aa10.48□□□□□ -0.73
NUP54-202ENST00000502850 CXCL13O43927 109 aa10.48□□□□□ -0.73
NUP54-202ENST00000502850 TRAPPC6AO75865 159 aa10.48□□□□□ -0.73
NUP54-202ENST00000502850 PMP2P02689 132 aa10.48□□□□□ -0.73
NUP54-202ENST00000502850 PDGFAP04085 211 aa10.48□□□□□ -0.73
NUP54-202ENST00000502850 FCGR2AP12318 317 aa10.48□□□□□ -0.73
NUP54-202ENST00000502850 FAHP16930 419 aa10.48□□□□□ -0.73
NUP54-202ENST00000502850 VAMP1P23763 118 aa10.48□□□□□ -0.73
NUP54-202ENST00000502850 OR3A2P47893 321 aa10.48□□□□□ -0.73
NUP54-202ENST00000502850 RPS18P62269 152 aaKnown RBP10.48□□□□□ -0.73
NUP54-202ENST00000502850 MICBQ29980 383 aa10.48□□□□□ -0.73
NUP54-202ENST00000502850 PLEKHN1Q494U1 663 aaPredicted RBP10.48□□□□□ -0.73
NUP54-202ENST00000502850 C11orf87Q6NUJ2 197 aa10.48□□□□□ -0.73
NUP54-202ENST00000502850 PLXDC2Q6UX71 529 aa10.48□□□□□ -0.73
NUP54-202ENST00000502850 LHFPL2Q6ZUX7 228 aa10.48□□□□□ -0.73
NUP54-202ENST00000502850 SULF2Q8IWU5 870 aa10.48□□□□□ -0.73
NUP54-202ENST00000502850 ZNF100Q8IYN0 542 aa10.48□□□□□ -0.73
NUP54-202ENST00000502850 TMEM185AQ8NFB2 350 aa10.48□□□□□ -0.73
NUP54-202ENST00000502850 COQ8AQ8NI60 647 aa10.48□□□□□ -0.73
NUP54-202ENST00000502850 THAP6Q8TBB0 222 aa10.48□□□□□ -0.73
NUP54-202ENST00000502850 FBXO17Q96EF6 278 aa10.48□□□□□ -0.73
NUP54-202ENST00000502850 ARHGAP5-AS1Q96IT6 56 aa10.48□□□□□ -0.73
NUP54-202ENST00000502850 IP6K3Q96PC2 410 aa10.48□□□□□ -0.73
NUP54-202ENST00000502850 FOXB1Q99853 325 aa10.48□□□□□ -0.73
NUP54-202ENST00000502850 CRLF2Q9HC73 371 aa10.48□□□□□ -0.73
NUP54-202ENST00000502850 PCDHB16Q9NRJ7 776 aa10.48□□□□□ -0.73
NUP54-202ENST00000502850 EDARQ9UNE0 448 aa10.48□□□□□ -0.73
NUP54-202ENST00000502850 CCDC187A0A096LP49 1063 aa10.47□□□□□ -0.73
NUP54-202ENST00000502850 TRAV14DV4A0A0A6YYC5 116 aa10.47□□□□□ -0.73
NUP54-202ENST00000502850 A0A0G2JMM0 328 aa10.47□□□□□ -0.73
NUP54-202ENST00000502850 A0A1W2PPB8 328 aa10.47□□□□□ -0.73
NUP54-202ENST00000502850 hCG_1807616A0A1W2PRN6 198 aa10.47□□□□□ -0.73
NUP54-202ENST00000502850 A0A1W2PRS3 328 aa10.47□□□□□ -0.73
NUP54-202ENST00000502850 OR2AT4A6NND4 320 aa10.47□□□□□ -0.73
NUP54-202ENST00000502850 FOXI3A8MTJ6 420 aaPredicted RBP10.47□□□□□ -0.73
NUP54-202ENST00000502850 KIR3DP1A8MWS1 328 aa10.47□□□□□ -0.73
NUP54-202ENST00000502850 I3L521 148 aa10.47□□□□□ -0.73
NUP54-202ENST00000502850 MPGP29372 298 aa10.47□□□□□ -0.73
NUP54-202ENST00000502850 UBE2V2Q15819 145 aa10.47□□□□□ -0.73
NUP54-202ENST00000502850 HYAL4Q2M3T9 481 aa10.47□□□□□ -0.73
NUP54-202ENST00000502850 KRTAP27-1Q3LI81 207 aa10.47□□□□□ -0.73
NUP54-202ENST00000502850 ABHD17BQ5VST6 288 aa10.47□□□□□ -0.73
NUP54-202ENST00000502850 TIPARPQ7Z3E1 657 aaKnown RBP10.47□□□□□ -0.73
NUP54-202ENST00000502850 GALNTL5Q7Z4T8 443 aa10.47□□□□□ -0.73
NUP54-202ENST00000502850 KCNRGQ8N5I3 272 aa10.47□□□□□ -0.73
NUP54-202ENST00000502850 DEFB124Q8NES8 71 aa10.47□□□□□ -0.73
NUP54-202ENST00000502850 ST8SIA4Q92187 359 aa10.47□□□□□ -0.73
NUP54-202ENST00000502850 WDR89Q96FK6 387 aaPredicted RBP10.47□□□□□ -0.73
NUP54-202ENST00000502850 REEP6Q96HR9 211 aa10.47□□□□□ -0.73
NUP54-202ENST00000502850 METTL9Q9H1A3 318 aa10.47□□□□□ -0.73
NUP54-202ENST00000502850 LRFN1Q9P244 771 aa10.47□□□□□ -0.73
NUP54-202ENST00000502850 NUP50Q9UKX7 468 aa10.47□□□□□ -0.73
NUP54-202ENST00000502850 ACACBO00763 2458 aa10.47□□□□□ -0.73
NUP54-202ENST00000502850 NCOA6Q14686 2063 aaPredicted RBP10.47□□□□□ -0.73
NUP54-202ENST00000502850 EFSO43281 561 aa10.47□□□□□ -0.73
NUP54-202ENST00000502850 XRCC2O43543 280 aa10.47□□□□□ -0.73
NUP54-202ENST00000502850 CRYZL1O95825 349 aa10.47□□□□□ -0.73
NUP54-202ENST00000502850 SERPINA2P20848 420 aa10.47□□□□□ -0.73
NUP54-202ENST00000502850 BLVRBP30043 206 aaPredicted RBP10.47□□□□□ -0.73
NUP54-202ENST00000502850 HTR5AP47898 357 aa10.47□□□□□ -0.73
NUP54-202ENST00000502850 GFRA1P56159 465 aa10.47□□□□□ -0.73
NUP54-202ENST00000502850 TMEM50BP56557 158 aa10.47□□□□□ -0.73
NUP54-202ENST00000502850 AANATQ16613 207 aa10.47□□□□□ -0.73
NUP54-202ENST00000502850 RSPO1Q2MKA7 263 aaPredicted RBP10.47□□□□□ -0.73
NUP54-202ENST00000502850 WIPI1Q5MNZ9 446 aaPredicted RBP10.47□□□□□ -0.73
NUP54-202ENST00000502850 C17orf107Q6ZR85 190 aa10.47□□□□□ -0.73
NUP54-202ENST00000502850 ACOT7LQ6ZUV0 252 aa10.47□□□□□ -0.73
NUP54-202ENST00000502850 PEG10Q86TG7 708 aaKnown RBP10.47□□□□□ -0.73
NUP54-202ENST00000502850 INO80EQ8NBZ0 244 aaPredicted RBP10.47□□□□□ -0.73
NUP54-202ENST00000502850 CSNK2A3Q8NEV1 391 aa10.47□□□□□ -0.73
NUP54-202ENST00000502850 LRRC20Q8TCA0 184 aa10.47□□□□□ -0.73
NUP54-202ENST00000502850 MARCH1Q8TCQ1 289 aa10.47□□□□□ -0.73
NUP54-202ENST00000502850 MRGPRFQ96AM1 343 aa10.47□□□□□ -0.73
NUP54-202ENST00000502850 SGK3Q96BR1 496 aa10.47□□□□□ -0.73
NUP54-202ENST00000502850 MRPS24Q96EL2 167 aaKnown RBP10.47□□□□□ -0.73
NUP54-202ENST00000502850 PHYHIPLQ96FC7 376 aa10.47□□□□□ -0.73
NUP54-202ENST00000502850 POM121Q96HA1 1249 aa10.47□□□□□ -0.73
NUP54-202ENST00000502850 THOC3Q96J01 351 aaKnown RBP10.47□□□□□ -0.73
NUP54-202ENST00000502850 SLX1AQ9BQ83 275 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms