RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 GBE1Q04446 702 aa1.6□□□□□ -2.15
VPS50-219ENST00000495039 INCA1Q0VD86 236 aa1.6□□□□□ -2.15
VPS50-219ENST00000495039 MAPRE2Q15555 327 aa1.6□□□□□ -2.15
VPS50-219ENST00000495039 SP6Q3SY56 376 aa1.6□□□□□ -2.15
VPS50-219ENST00000495039 TMEM69Q5SWH9 247 aa1.6□□□□□ -2.15
VPS50-219ENST00000495039 HHATQ5VTY9 493 aa1.6□□□□□ -2.15
VPS50-219ENST00000495039 PLCXD3Q63HM9 321 aa1.6□□□□□ -2.15
VPS50-219ENST00000495039 KDM4DQ6B0I6 523 aa1.6□□□□□ -2.15
VPS50-219ENST00000495039 ZFAND6Q6FIF0 208 aa1.6□□□□□ -2.15
VPS50-219ENST00000495039 MORN3Q6PF18 240 aaPredicted RBP1.6□□□□□ -2.15
VPS50-219ENST00000495039 NDUFAF7Q7L592 441 aa1.6□□□□□ -2.15
VPS50-219ENST00000495039 DAZ4Q86SG3 579 aaKnown RBP1.6□□□□□ -2.15
VPS50-219ENST00000495039 BBS7Q8IWZ6 715 aa1.6□□□□□ -2.15
VPS50-219ENST00000495039 CMTM8Q8IZV2 173 aa1.6□□□□□ -2.15
VPS50-219ENST00000495039 LINC00469Q8N7U9 141 aa1.6□□□□□ -2.15
VPS50-219ENST00000495039 OR52K2Q8NGK3 314 aa1.6□□□□□ -2.15
VPS50-219ENST00000495039 GLYATL2Q8WU03 294 aa1.6□□□□□ -2.15
VPS50-219ENST00000495039 ISOC2Q96AB3 205 aa1.6□□□□□ -2.15
VPS50-219ENST00000495039 S100PBPQ96BU1 408 aa1.6□□□□□ -2.15
VPS50-219ENST00000495039 TMEM175Q9BSA9 504 aa1.6□□□□□ -2.15
VPS50-219ENST00000495039 TBL1XR1Q9BZK7 514 aa1.6□□□□□ -2.15
VPS50-219ENST00000495039 FANCEQ9HB96 536 aa1.6□□□□□ -2.15
VPS50-219ENST00000495039 DAZ1Q9NQZ3 744 aaKnown RBP1.6□□□□□ -2.15
VPS50-219ENST00000495039 ZNF230Q9UIE0 474 aaPredicted RBP1.6□□□□□ -2.15
VPS50-219ENST00000495039 CES1P1Q9UKY3 287 aa1.6□□□□□ -2.15
VPS50-219ENST00000495039 ZNF608Q9ULD9 1512 aaPredicted RBP1.6□□□□□ -2.15
VPS50-219ENST00000495039 SEC16AO15027 2179 aa1.59□□□□□ -2.15
VPS50-219ENST00000495039 LTBP4Q8N2S1 1624 aa1.59□□□□□ -2.15
VPS50-219ENST00000495039 LOC102724200A0A096LPH7 203 aaPredicted RBP1.59□□□□□ -2.15
VPS50-219ENST00000495039 A0A0B4J2E0 115 aa1.59□□□□□ -2.15
VPS50-219ENST00000495039 H3BN98 237 aa1.59□□□□□ -2.15
VPS50-219ENST00000495039 CLDN34H7C241 214 aa1.59□□□□□ -2.15
VPS50-219ENST00000495039 KLHL2O95198 593 aa1.59□□□□□ -2.15
VPS50-219ENST00000495039 ARL2P36404 184 aa1.59□□□□□ -2.15
VPS50-219ENST00000495039 CLDN6P56747 220 aa1.59□□□□□ -2.15
VPS50-219ENST00000495039 ATP6V0D1P61421 351 aa1.59□□□□□ -2.15
VPS50-219ENST00000495039 RPL18AQ02543 176 aaKnown RBP1.59□□□□□ -2.15
VPS50-219ENST00000495039 KLHL40Q2TBA0 621 aa1.59□□□□□ -2.15
VPS50-219ENST00000495039 TPRG1LQ5T0D9 272 aa1.59□□□□□ -2.15
VPS50-219ENST00000495039 ADM2Q7Z4H4 148 aa1.59□□□□□ -2.15
VPS50-219ENST00000495039 CNPY4Q8N129 248 aa1.59□□□□□ -2.15
VPS50-219ENST00000495039 RNF10Q8N5U6 811 aaKnown RBP1.59□□□□□ -2.15
VPS50-219ENST00000495039 TRAM1L1Q8N609 369 aa1.59□□□□□ -2.15
VPS50-219ENST00000495039 OR10Z1Q8NGY1 313 aa1.59□□□□□ -2.15
VPS50-219ENST00000495039 GPX8Q8TED1 209 aa1.59□□□□□ -2.15
VPS50-219ENST00000495039 HGDQ93099 445 aa1.59□□□□□ -2.15
VPS50-219ENST00000495039 FAM19A4Q96LR4 140 aa1.59□□□□□ -2.15
VPS50-219ENST00000495039 UBE2E2Q96LR5 201 aa1.59□□□□□ -2.15
VPS50-219ENST00000495039 Q96MT0 163 aa1.59□□□□□ -2.15
VPS50-219ENST00000495039 TM2D3Q9BRN9 247 aa1.59□□□□□ -2.15
VPS50-219ENST00000495039 TMEM100Q9NV29 134 aa1.59□□□□□ -2.15
VPS50-219ENST00000495039 TAS2R1Q9NYW7 299 aa1.59□□□□□ -2.15
VPS50-219ENST00000495039 CARHSP1Q9Y2V2 147 aaKnown RBP1.59□□□□□ -2.15
VPS50-219ENST00000495039 OR51B2Q9Y5P1 312 aa1.59□□□□□ -2.15
VPS50-219ENST00000495039 LOXHD1Q8IVV2 1947 aa1.59□□□□□ -2.15
VPS50-219ENST00000495039 JCADQ9P266 1359 aa1.59□□□□□ -2.16
VPS50-219ENST00000495039 RPRD2Q5VT52 1461 aaKnown RBP1.58□□□□□ -2.16
VPS50-219ENST00000495039 IGKV1-6A0A0C4DH72 117 aa1.58□□□□□ -2.16
VPS50-219ENST00000495039 A0A0G2JMP0 313 aa1.58□□□□□ -2.16
VPS50-219ENST00000495039 A0A0X1KG70 313 aa1.58□□□□□ -2.16
VPS50-219ENST00000495039 GOLGA6L4A6NEF3 574 aa1.58□□□□□ -2.16
VPS50-219ENST00000495039 SLC22A20A6NK97 555 aa1.58□□□□□ -2.16
VPS50-219ENST00000495039 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP1.58□□□□□ -2.16
VPS50-219ENST00000495039 TTC4O95801 387 aa1.58□□□□□ -2.16
VPS50-219ENST00000495039 PTTG1O95997 202 aa1.58□□□□□ -2.16
VPS50-219ENST00000495039 IGKV1-39P01597 117 aa1.58□□□□□ -2.16
VPS50-219ENST00000495039 IGKV1D-39P04432 117 aa1.58□□□□□ -2.16
VPS50-219ENST00000495039 SLC35G6P0C7Q6 338 aa1.58□□□□□ -2.16
VPS50-219ENST00000495039 TGM4P49221 684 aa1.58□□□□□ -2.16
VPS50-219ENST00000495039 MTPNP58546 118 aa1.58□□□□□ -2.16
VPS50-219ENST00000495039 RAB11AP62491 216 aa1.58□□□□□ -2.16
VPS50-219ENST00000495039 SLC35A1P78382 337 aa1.58□□□□□ -2.16
VPS50-219ENST00000495039 IHHQ14623 411 aa1.58□□□□□ -2.16
VPS50-219ENST00000495039 RAB11BQ15907 218 aa1.58□□□□□ -2.16
VPS50-219ENST00000495039 APOBEC3HQ6NTF7 200 aaKnown RBP1.58□□□□□ -2.16
VPS50-219ENST00000495039 OTUD6AQ7L8S5 288 aa1.58□□□□□ -2.16
VPS50-219ENST00000495039 NT5DC3Q86UY8 548 aa1.58□□□□□ -2.16
VPS50-219ENST00000495039 PDPNQ86YL7 162 aa1.58□□□□□ -2.16
VPS50-219ENST00000495039 SLC7A5P1Q8MH63 180 aa1.58□□□□□ -2.16
VPS50-219ENST00000495039 DAW1Q8N136 415 aa1.58□□□□□ -2.16
VPS50-219ENST00000495039 PIH1D2Q8WWB5 315 aa1.58□□□□□ -2.16
VPS50-219ENST00000495039 NAT6Q93015 286 aa1.58□□□□□ -2.16
VPS50-219ENST00000495039 YIPF6Q96EC8 236 aa1.58□□□□□ -2.16
VPS50-219ENST00000495039 SMARCD1Q96GM5 515 aa1.58□□□□□ -2.16
VPS50-219ENST00000495039 MS4A8Q9BY19 250 aa1.58□□□□□ -2.16
VPS50-219ENST00000495039 C8orf33Q9H7E9 229 aaPredicted RBP1.58□□□□□ -2.16
VPS50-219ENST00000495039 CA10Q9NS85 328 aa1.58□□□□□ -2.16
VPS50-219ENST00000495039 ZNF586Q9NXT0 402 aa1.58□□□□□ -2.16
VPS50-219ENST00000495039 ZSWIM8A7E2V4 1837 aa1.58□□□□□ -2.16
VPS50-219ENST00000495039 SDK2Q58EX2 2172 aa1.58□□□□□ -2.16
VPS50-219ENST00000495039 C2orf16Q68DN1 1984 aa1.58□□□□□ -2.16
VPS50-219ENST00000495039 NPHP4O75161 1426 aaPredicted RBP1.57□□□□□ -2.16
VPS50-219ENST00000495039 NLRC5Q86WI3 1866 aa1.57□□□□□ -2.16
VPS50-219ENST00000495039 IGHV6-1A0A0B4J1U7 121 aa1.57□□□□□ -2.16
VPS50-219ENST00000495039 TRAV8-6A0A0B4J262 113 aa1.57□□□□□ -2.16
VPS50-219ENST00000495039 TMEM72A0PK05 275 aa1.57□□□□□ -2.16
VPS50-219ENST00000495039 C4orf51C9J302 202 aa1.57□□□□□ -2.16
VPS50-219ENST00000495039 NRASP01111 189 aa1.57□□□□□ -2.16
VPS50-219ENST00000495039 HRASP01112 189 aa1.57□□□□□ -2.16
VPS50-219ENST00000495039 KRASP01116 189 aa1.57□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms