RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 C4orf36Q96KX1 117 aa13.34□□□□□ -0.27
LIME1-209ENST00000494776 SSBP3Q9BWW4 388 aaPredicted RBP13.34□□□□□ -0.27
LIME1-209ENST00000494776 INPP5EQ9NRR6 644 aa13.34□□□□□ -0.27
LIME1-209ENST00000494776 NKX1-2Q9UD57 310 aaPredicted RBP13.34□□□□□ -0.27
LIME1-209ENST00000494776 LRCH1Q9Y2L9 728 aa13.34□□□□□ -0.27
LIME1-209ENST00000494776 V9GYS6 101 aa13.34□□□□□ -0.27
LIME1-209ENST00000494776 IGHV3OR15-7A0A075B7D8 119 aa13.33□□□□□ -0.28
LIME1-209ENST00000494776 A6NIN4 97 aa13.33□□□□□ -0.28
LIME1-209ENST00000494776 PHF1O43189 567 aaPredicted RBP13.33□□□□□ -0.28
LIME1-209ENST00000494776 WBP4O75554 376 aaKnown RBP13.33□□□□□ -0.28
LIME1-209ENST00000494776 UBCP0CG48 685 aaKnown RBP13.33□□□□□ -0.28
LIME1-209ENST00000494776 GATA3P23771 443 aa13.33□□□□□ -0.28
LIME1-209ENST00000494776 ZFP36P26651 326 aaKnown RBP13.33□□□□□ -0.28
LIME1-209ENST00000494776 CAPGP40121 348 aa13.33□□□□□ -0.28
LIME1-209ENST00000494776 PITPNBP48739 271 aa13.33□□□□□ -0.28
LIME1-209ENST00000494776 GMFBP60983 142 aa13.33□□□□□ -0.28
LIME1-209ENST00000494776 ISL1P61371 349 aa13.33□□□□□ -0.28
LIME1-209ENST00000494776 ADARB1P78563 741 aaKnown RBP13.33□□□□□ -0.28
LIME1-209ENST00000494776 MICBQ29980 383 aa13.33□□□□□ -0.28
LIME1-209ENST00000494776 C8orf59Q8N0T1 100 aaPredicted RBP13.33□□□□□ -0.28
LIME1-209ENST00000494776 GCSAMQ8N6F7 178 aa13.33□□□□□ -0.28
LIME1-209ENST00000494776 SCCPDHQ8NBX0 429 aa13.33□□□□□ -0.28
LIME1-209ENST00000494776 CCDC54Q8NEL0 328 aa13.33□□□□□ -0.28
LIME1-209ENST00000494776 OR14K1Q8NGZ2 314 aa13.33□□□□□ -0.28
LIME1-209ENST00000494776 OR2G2Q8NGZ5 317 aa13.33□□□□□ -0.28
LIME1-209ENST00000494776 TLNRD1Q9H1K6 362 aa13.33□□□□□ -0.28
LIME1-209ENST00000494776 GPR173Q9NS66 373 aa13.33□□□□□ -0.28
LIME1-209ENST00000494776 ERVK13-1Q9NX77 482 aa13.33□□□□□ -0.28
LIME1-209ENST00000494776 OR5V1Q9UGF6 321 aa13.33□□□□□ -0.28
LIME1-209ENST00000494776 SONP18583 2426 aaKnown RBP13.32□□□□□ -0.28
LIME1-209ENST00000494776 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.32□□□□□ -0.286e-7■□□□□ 10.9
LIME1-209ENST00000494776 IRGMA1A4Y4 181 aa13.32□□□□□ -0.28
LIME1-209ENST00000494776 OR5B21A6NL26 309 aa13.32□□□□□ -0.28
LIME1-209ENST00000494776 DHRS7CA6NNS2 312 aa13.32□□□□□ -0.28
LIME1-209ENST00000494776 H0YAE9 185 aa13.32□□□□□ -0.28
LIME1-209ENST00000494776 J3QLI3 93 aa13.32□□□□□ -0.28
LIME1-209ENST00000494776 NDUFA2O43678 99 aa13.32□□□□□ -0.28
LIME1-209ENST00000494776 LHBP01229 141 aa13.32□□□□□ -0.28
LIME1-209ENST00000494776 IGHA1P01876 353 aa13.32□□□□□ -0.28
LIME1-209ENST00000494776 GYPAP02724 150 aa13.32□□□□□ -0.28
LIME1-209ENST00000494776 ZNF12P17014 697 aa13.32□□□□□ -0.28
LIME1-209ENST00000494776 EGR1P18146 543 aa13.32□□□□□ -0.28
LIME1-209ENST00000494776 CCL1P22362 96 aa13.32□□□□□ -0.28
LIME1-209ENST00000494776 KIR3DL2P43630 455 aa13.32□□□□□ -0.28
LIME1-209ENST00000494776 TMEM244Q5VVB8 128 aa13.32□□□□□ -0.28
LIME1-209ENST00000494776 LYPD2Q6UXB3 125 aa13.32□□□□□ -0.28
LIME1-209ENST00000494776 KRT74Q7RTS7 529 aa13.32□□□□□ -0.28
LIME1-209ENST00000494776 PRIMA1Q86XR5 153 aa13.32□□□□□ -0.28
LIME1-209ENST00000494776 TEX29Q8N6K0 151 aa13.32□□□□□ -0.28
LIME1-209ENST00000494776 FGF23Q9GZV9 251 aaPredicted RBP13.32□□□□□ -0.28
LIME1-209ENST00000494776 C7orf69Q9H7B7 122 aa13.32□□□□□ -0.28
LIME1-209ENST00000494776 MRPS18AQ9NVS2 196 aaKnown RBP13.32□□□□□ -0.28
LIME1-209ENST00000494776 FRRS1LQ9P0K9 344 aa13.32□□□□□ -0.28
LIME1-209ENST00000494776 ERVK-18Q9QC07 812 aa13.32□□□□□ -0.28
LIME1-209ENST00000494776 DNAJB11Q9UBS4 358 aa13.32□□□□□ -0.28
LIME1-209ENST00000494776 CLN8Q9UBY8 286 aa13.32□□□□□ -0.28
LIME1-209ENST00000494776 HSPE1-MOB4S4R3N1 261 aa13.32□□□□□ -0.28
LIME1-209ENST00000494776 LOC107986453A0A1B0GWG9 222 aa13.31□□□□□ -0.28
LIME1-209ENST00000494776 A8MXK9 166 aa13.31□□□□□ -0.28
LIME1-209ENST00000494776 ADAM20O43506 726 aa13.31□□□□□ -0.28
LIME1-209ENST00000494776 SERPINA3P01011 423 aa13.31□□□□□ -0.28
LIME1-209ENST00000494776 MUC1P15941 1255 aaPredicted RBP13.31□□□□□ -0.28
LIME1-209ENST00000494776 FAM76BQ5HYJ3 339 aa13.31□□□□□ -0.28
LIME1-209ENST00000494776 RDH10Q8IZV5 341 aa13.31□□□□□ -0.28
LIME1-209ENST00000494776 SYS1Q8N2H4 156 aa13.31□□□□□ -0.28
LIME1-209ENST00000494776 OR10Z1Q8NGY1 313 aa13.31□□□□□ -0.28
LIME1-209ENST00000494776 ZNF671Q8TAW3 534 aa13.31□□□□□ -0.28
LIME1-209ENST00000494776 PELI1Q96FA3 418 aa13.31□□□□□ -0.28
LIME1-209ENST00000494776 TECTBQ96PL2 329 aa13.31□□□□□ -0.28
LIME1-209ENST00000494776 OR51I2Q9H344 312 aa13.31□□□□□ -0.28
LIME1-209ENST00000494776 ISG20L2Q9H9L3 353 aaKnown RBP13.31□□□□□ -0.28
LIME1-209ENST00000494776 FGF20Q9NP95 211 aaPredicted RBP13.31□□□□□ -0.28
LIME1-209ENST00000494776 SLC7A11Q9UPY5 501 aa13.31□□□□□ -0.28
LIME1-209ENST00000494776 PPIAL4CA0A0B4J2A2 164 aa13.3□□□□□ -0.28
LIME1-209ENST00000494776 ANKRD61A6NGH8 418 aa13.3□□□□□ -0.28
LIME1-209ENST00000494776 KIAA1324LA8MWY0 1029 aaPredicted RBP13.3□□□□□ -0.28
LIME1-209ENST00000494776 AKR7A2O43488 359 aa13.3□□□□□ -0.28
LIME1-209ENST00000494776 MYL12AP19105 171 aa13.3□□□□□ -0.28
LIME1-209ENST00000494776 DCKP27707 260 aa13.3□□□□□ -0.28
LIME1-209ENST00000494776 CFHR2P36980 270 aa13.3□□□□□ -0.28
LIME1-209ENST00000494776 NPY4RP50391 375 aa13.3□□□□□ -0.28
LIME1-209ENST00000494776 CCR9P51686 369 aa13.3□□□□□ -0.28
LIME1-209ENST00000494776 GBX2P52951 348 aaPredicted RBP13.3□□□□□ -0.28
LIME1-209ENST00000494776 MRPL28Q13084 256 aaKnown RBP13.3□□□□□ -0.28
LIME1-209ENST00000494776 MED21Q13503 144 aa13.3□□□□□ -0.28
LIME1-209ENST00000494776 ALKBH1Q13686 389 aaKnown RBP13.3□□□□□ -0.28
LIME1-209ENST00000494776 TEX36Q5VZQ5 186 aa13.3□□□□□ -0.28
LIME1-209ENST00000494776 FDX2Q6P4F2 183 aa13.3□□□□□ -0.28
LIME1-209ENST00000494776 HAGHLQ6PII5 290 aaPredicted RBP13.3□□□□□ -0.28
LIME1-209ENST00000494776 BTNL3Q6UXE8 466 aa13.3□□□□□ -0.28
LIME1-209ENST00000494776 Q6ZSR3 168 aa13.3□□□□□ -0.28
LIME1-209ENST00000494776 FAM90A1Q86YD7 464 aa13.3□□□□□ -0.28
LIME1-209ENST00000494776 ZNF573Q86YE8 665 aa13.3□□□□□ -0.28
LIME1-209ENST00000494776 EGFL6Q8IUX8 553 aa13.3□□□□□ -0.28
LIME1-209ENST00000494776 ZNF676Q8N7Q3 588 aa13.3□□□□□ -0.28
LIME1-209ENST00000494776 MRI1Q9BV20 369 aa13.3□□□□□ -0.28
LIME1-209ENST00000494776 TMPRSS13Q9BYE2 586 aa13.3□□□□□ -0.28
LIME1-209ENST00000494776 MMP26Q9NRE1 261 aa13.3□□□□□ -0.28
LIME1-209ENST00000494776 CHCHD3Q9NX63 227 aaKnown RBP13.3□□□□□ -0.28
LIME1-209ENST00000494776 POLR3KQ9Y2Y1 108 aaPredicted RBP13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms