RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 PPIAL4AQ9Y536 164 aa13.32□□□□□ -0.28
UPF3A-208ENST00000484246 ANK3Q12955 4377 aaKnown RBP13.32□□□□□ -0.28
UPF3A-208ENST00000484246 PPIAL4CA0A0B4J2A2 164 aa13.31□□□□□ -0.28
UPF3A-208ENST00000484246 CRLF1O75462 422 aa13.31□□□□□ -0.28
UPF3A-208ENST00000484246 ATP6V1G2O95670 118 aa13.31□□□□□ -0.28
UPF3A-208ENST00000484246 TGFAP01135 160 aa13.31□□□□□ -0.28
UPF3A-208ENST00000484246 GRPP07492 148 aa13.31□□□□□ -0.28
UPF3A-208ENST00000484246 HTR1AP08908 422 aa13.31□□□□□ -0.28
UPF3A-208ENST00000484246 HOXB4P17483 251 aaPredicted RBP13.31□□□□□ -0.28
UPF3A-208ENST00000484246 HSPA13P48723 471 aa13.31□□□□□ -0.28
UPF3A-208ENST00000484246 CSNK2BP67870 215 aa13.31□□□□□ -0.28
UPF3A-208ENST00000484246 ALKBH1Q13686 389 aaKnown RBP13.31□□□□□ -0.28
UPF3A-208ENST00000484246 KCNJ8Q15842 424 aa13.31□□□□□ -0.28
UPF3A-208ENST00000484246 TEX36Q5VZQ5 186 aa13.31□□□□□ -0.28
UPF3A-208ENST00000484246 DCDC5Q6ZRR9 648 aa13.31□□□□□ -0.28
UPF3A-208ENST00000484246 GLCCI1Q86VQ1 547 aa13.31□□□□□ -0.28
UPF3A-208ENST00000484246 TMEM186Q96B77 213 aa13.31□□□□□ -0.28
UPF3A-208ENST00000484246 TECTBQ96PL2 329 aa13.31□□□□□ -0.28
UPF3A-208ENST00000484246 HIST1H2AAQ96QV6 131 aa13.31□□□□□ -0.28
UPF3A-208ENST00000484246 ANKRD60Q9BZ19 345 aa13.31□□□□□ -0.28
UPF3A-208ENST00000484246 CHST5Q9GZS9 411 aa13.31□□□□□ -0.28
UPF3A-208ENST00000484246 OR51I2Q9H344 312 aa13.31□□□□□ -0.28
UPF3A-208ENST00000484246 ISG20L2Q9H9L3 353 aaKnown RBP13.31□□□□□ -0.28
UPF3A-208ENST00000484246 FKBP14Q9NWM8 211 aa13.31□□□□□ -0.28
UPF3A-208ENST00000484246 LPAR3Q9UBY5 353 aa13.31□□□□□ -0.28
UPF3A-208ENST00000484246 PSORS1C1Q9UIG5 152 aa13.31□□□□□ -0.28
UPF3A-208ENST00000484246 TMEM212A6NML5 194 aa13.3□□□□□ -0.28
UPF3A-208ENST00000484246 SRRM5B3KS81 715 aa13.3□□□□□ -0.28
UPF3A-208ENST00000484246 FOXH1O75593 365 aa13.3□□□□□ -0.28
UPF3A-208ENST00000484246 NRASP01111 189 aa13.3□□□□□ -0.28
UPF3A-208ENST00000484246 CCDC159P0C7I6 412 aa13.3□□□□□ -0.28
UPF3A-208ENST00000484246 MYL12AP19105 171 aa13.3□□□□□ -0.28
UPF3A-208ENST00000484246 RBMXP38159 391 aaKnown RBP13.3□□□□□ -0.28
UPF3A-208ENST00000484246 CCDC58Q4VC31 144 aa13.3□□□□□ -0.28
UPF3A-208ENST00000484246 ZNF826PQ6ZT77 177 aa13.3□□□□□ -0.28
UPF3A-208ENST00000484246 OR52N1Q8NH53 320 aa13.3□□□□□ -0.28
UPF3A-208ENST00000484246 PP6455Q8WZ26 134 aa13.3□□□□□ -0.28
UPF3A-208ENST00000484246 GGHQ92820 318 aa13.3□□□□□ -0.28
UPF3A-208ENST00000484246 C12orf43Q96C57 262 aaKnown RBP13.3□□□□□ -0.28
UPF3A-208ENST00000484246 POM121Q96HA1 1249 aa13.3□□□□□ -0.28
UPF3A-208ENST00000484246 TMEM80Q96HE8 168 aa13.3□□□□□ -0.28
UPF3A-208ENST00000484246 RNF170Q96K19 258 aa13.3□□□□□ -0.28
UPF3A-208ENST00000484246 TMEM246Q9BRR3 403 aa13.3□□□□□ -0.28
UPF3A-208ENST00000484246 PLEKHA1Q9HB21 404 aa13.3□□□□□ -0.28
UPF3A-208ENST00000484246 UBAP1Q9NZ09 502 aa13.3□□□□□ -0.28
UPF3A-208ENST00000484246 MIOXQ9UGB7 285 aa13.3□□□□□ -0.28
UPF3A-208ENST00000484246 CDC42EP3Q9UKI2 254 aa13.3□□□□□ -0.28
UPF3A-208ENST00000484246 LRCH1Q9Y2L9 728 aa13.3□□□□□ -0.28
UPF3A-208ENST00000484246 TRAV38-1A0A0B4J264 116 aa13.29□□□□□ -0.28
UPF3A-208ENST00000484246 hCG_1807616A0A1W2PRN6 198 aa13.29□□□□□ -0.28
UPF3A-208ENST00000484246 ANKRD61A6NGH8 418 aa13.29□□□□□ -0.28
UPF3A-208ENST00000484246 OOEPA6NGQ2 149 aa13.29□□□□□ -0.28
UPF3A-208ENST00000484246 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.29□□□□□ -0.28
UPF3A-208ENST00000484246 TNFRSF13BO14836 293 aaPredicted RBP13.29□□□□□ -0.28
UPF3A-208ENST00000484246 NDUFA2O43678 99 aa13.29□□□□□ -0.28
UPF3A-208ENST00000484246 GATBO75879 557 aaKnown RBP13.29□□□□□ -0.28
UPF3A-208ENST00000484246 WNT2P09544 360 aa13.29□□□□□ -0.28
UPF3A-208ENST00000484246 MYF6P23409 242 aa13.29□□□□□ -0.28
UPF3A-208ENST00000484246 ETV1P50549 477 aa13.29□□□□□ -0.28
UPF3A-208ENST00000484246 GBX2P52951 348 aaPredicted RBP13.29□□□□□ -0.28
UPF3A-208ENST00000484246 MED21Q13503 144 aa13.29□□□□□ -0.28
UPF3A-208ENST00000484246 FAM201AQ5SY85 155 aa13.29□□□□□ -0.28
UPF3A-208ENST00000484246 PLCXD3Q63HM9 321 aa13.29□□□□□ -0.28
UPF3A-208ENST00000484246 TMPRSS11AQ6ZMR5 421 aa13.29□□□□□ -0.28
UPF3A-208ENST00000484246 ZNF485Q8NCK3 441 aa13.29□□□□□ -0.28
UPF3A-208ENST00000484246 LRRC29Q8WV35 223 aa13.29□□□□□ -0.28
UPF3A-208ENST00000484246 HHLA2Q9UM44 414 aa13.29□□□□□ -0.28
UPF3A-208ENST00000484246 PCDHB10Q9UN67 800 aa13.29□□□□□ -0.28
UPF3A-208ENST00000484246 ABCA2Q9BZC7 2435 aa13.28□□□□□ -0.28
UPF3A-208ENST00000484246 PQLC2LA1A4F0 135 aa13.28□□□□□ -0.28
UPF3A-208ENST00000484246 KIAA1324LA8MWY0 1029 aaPredicted RBP13.28□□□□□ -0.28
UPF3A-208ENST00000484246 ZNF732B4DXR9 585 aa13.28□□□□□ -0.28
UPF3A-208ENST00000484246 E9PI62 339 aa13.28□□□□□ -0.28
UPF3A-208ENST00000484246 CDIPTO14735 213 aa13.28□□□□□ -0.28
UPF3A-208ENST00000484246 PLPP2O43688 288 aa13.28□□□□□ -0.28
UPF3A-208ENST00000484246 RPS2P15880 293 aaKnown RBP13.28□□□□□ -0.28
UPF3A-208ENST00000484246 MUC1P15941 1255 aaPredicted RBP13.28□□□□□ -0.28
UPF3A-208ENST00000484246 EGR1P18146 543 aa13.28□□□□□ -0.28
UPF3A-208ENST00000484246 GATA3P23771 443 aa13.28□□□□□ -0.28
UPF3A-208ENST00000484246 GPM6AP51674 278 aa13.28□□□□□ -0.28
UPF3A-208ENST00000484246 ST3GAL4Q11206 333 aa13.28□□□□□ -0.28
UPF3A-208ENST00000484246 CEP78Q5JTW2 689 aa13.28□□□□□ -0.28
UPF3A-208ENST00000484246 RNLSQ5VYX0 342 aa13.28□□□□□ -0.28
UPF3A-208ENST00000484246 IZUMO2Q6UXV1 221 aa13.28□□□□□ -0.28
UPF3A-208ENST00000484246 MOB3CQ70IA8 216 aa13.28□□□□□ -0.28
UPF3A-208ENST00000484246 UTS2BQ765I0 119 aa13.28□□□□□ -0.28
UPF3A-208ENST00000484246 ZNF771Q7L3S4 317 aaPredicted RBP13.28□□□□□ -0.28
UPF3A-208ENST00000484246 NLRC3Q7RTR2 1065 aa13.28□□□□□ -0.28
UPF3A-208ENST00000484246 SCCPDHQ8NBX0 429 aa13.28□□□□□ -0.28
UPF3A-208ENST00000484246 NEIL1Q96FI4 390 aaPredicted RBP13.28□□□□□ -0.28
UPF3A-208ENST00000484246 HIF1ANQ9NWT6 349 aa13.28□□□□□ -0.28
UPF3A-208ENST00000484246 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.28□□□□□ -0.282e-8■■■■□ 23.5
UPF3A-208ENST00000484246 NAV3Q8IVL0 2385 aa13.27□□□□□ -0.29
UPF3A-208ENST00000484246 J3QLI3 93 aa13.27□□□□□ -0.29
UPF3A-208ENST00000484246 J3QT63 122 aa13.27□□□□□ -0.29
UPF3A-208ENST00000484246 XPNPEP2O43895 674 aa13.27□□□□□ -0.29
UPF3A-208ENST00000484246 ZFPL1O95159 310 aa13.27□□□□□ -0.29
UPF3A-208ENST00000484246 ZNF205O95201 554 aa13.27□□□□□ -0.29
UPF3A-208ENST00000484246 MPZP25189 248 aa13.27□□□□□ -0.29
UPF3A-208ENST00000484246 CD80P33681 288 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms