RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 OR51V1Q9H2C8 321 aa10.03□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 SEMA6AQ9H2E6 1030 aa10.03□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 MMP27Q9H306 513 aa10.03□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 OR51I2Q9H344 312 aa10.03□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 DPAGT1Q9H3H5 408 aa10.03□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 NIPAL2Q9H841 368 aa10.03□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 BRD7Q9NPI1 651 aa10.03□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 SIRT7Q9NRC8 400 aa10.03□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 ZNF222Q9UK12 451 aa10.03□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 DSCAML1Q8TD84 2053 aa10.03□□□□□ -0.8
MSH5-SAPCD1-205ENST00000476085 IGKV1D-17A0A075B6S4 117 aa10.02□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 MEGF11A6BM72 1044 aa10.02□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 PRR23D1E9PI22 279 aaPredicted RBP10.02□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 H3BN98 237 aa10.02□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 M0R1W7 72 aa10.02□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 TIMM23O14925 209 aa10.02□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 NPFFO15130 113 aa10.02□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 AKR7A2O43488 359 aa10.02□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 DNAJC8O75937 253 aaPredicted RBP10.02□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 CST1P01037 141 aa10.02□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 HMGN1P05114 100 aa10.02□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 FBP1P09467 338 aa10.02□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 PRR23D2P0DMB1 279 aaPredicted RBP10.02□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 OSMP13725 252 aa10.02□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 UBE2E1P51965 193 aa10.02□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 PSMA6P60900 246 aaKnown RBP10.02□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 IKZF1Q13422 519 aa10.02□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 MIDNQ504T8 468 aa10.02□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 SLC35D3Q5M8T2 416 aa10.02□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 BRICD5Q6PL45 260 aa10.02□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 DEGS2Q6QHC5 323 aa10.02□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 CMTM4Q8IZR5 234 aa10.02□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 BBS1Q8NFJ9 593 aa10.02□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 THEM6Q8WUY1 208 aa10.02□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 CANT1Q8WVQ1 401 aa10.02□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 LRTOMTQ8WZ04 291 aa10.02□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 MED30Q96HR3 178 aa10.02□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 RNF170Q96K19 258 aa10.02□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 CLPTM1LQ96KA5 538 aa10.02□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 SNTG1Q9NSN8 517 aa10.02□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 ONECUT1Q9UBC0 465 aa10.02□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 VPREB3Q9UKI3 123 aa10.02□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 MAB21L2Q9Y586 359 aa10.02□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 AQP12BA6NM10 295 aa10.01□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 OR2AT4A6NND4 320 aa10.01□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 PRR32B1ATL7 298 aa10.01□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 M0QZ24 198 aa10.01□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 RHBDL1O75783 438 aa10.01□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 TFF1P04155 84 aa10.01□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 PSG2P11465 335 aa10.01□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 PAICSP22234 425 aaKnown RBP10.01□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 HCCSP53701 268 aa10.01□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 PRB3Q04118 309 aaPredicted RBP10.01□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 BNIP1Q12981 228 aa10.01□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 KLRD1Q13241 179 aa10.01□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 GFOD2Q3B7J2 385 aa10.01□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 CRIP3Q6Q6R5 217 aa10.01□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 HIST2H2ABQ8IUE6 130 aaPredicted RBP10.01□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 AQP12AQ8IXF9 295 aa10.01□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 ZDHHC23Q8IYP9 409 aa10.01□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 HS3ST5Q8IZT8 346 aa10.01□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 C11orf42Q8N5U0 333 aa10.01□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 PIGCQ92535 297 aa10.01□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 CCDC124Q96CT7 223 aaKnown RBP10.01□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 SDSLQ96GA7 329 aa10.01□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 SLC25A19Q9HC21 320 aa10.01□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 FAM206AQ9NX38 181 aa10.01□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 NLKQ9UBE8 527 aa10.01□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 SLC25A10Q9UBX3 287 aaPredicted RBP10.01□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 CAB39Q9Y376 341 aaPredicted RBP10.01□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 FAM96BQ9Y3D0 163 aa10.01□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 LRP12Q9Y561 859 aa10.01□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 PLXNB1O43157 2135 aa10□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 ZNF816-ZNF321PA0A0X1KG74 233 aa10□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 ATP6V1B1P15313 513 aa10□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 PRKACGP22612 351 aa10□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 SAA4P35542 130 aa10□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 TGFBR2P37173 567 aa10□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 GPM6AP51674 278 aa10□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 GNG3P63215 75 aa10□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 ROM1Q03395 351 aa10□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 ACSM1Q08AH1 577 aa10□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 CEACAM21Q3KPI0 293 aa10□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 Q6ZSR3 168 aa10□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 PNKDQ8N490 385 aa10□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 PAPD5Q8NDF8 572 aaKnown RBP10□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 BEND2Q8NDZ0 799 aa10□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 OR5A2Q8NGI9 324 aa10□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 AQP3Q92482 292 aa10□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 OTULINQ96BN8 352 aa10□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 SLC7A6OSQ96CW6 309 aaPredicted RBP10□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 TEAD3Q99594 435 aa10□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 YIPF3Q9GZM5 350 aa10□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 MEGF9Q9H1U4 602 aa10□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 METTL8Q9H825 291 aaKnown RBP10□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 DNAJB11Q9UBS4 358 aa10□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 FBLN5Q9UBX5 448 aa10□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 NOTCH3Q9UM47 2321 aa10□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 TET2Q6N021 2002 aaPredicted RBP9.99□□□□□ -0.81
MSH5-SAPCD1-205ENST00000476085 CCDC182A6NF36 153 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 90.3 ms