RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 DSTNP60981 165 aa3.64□□□□□ -1.83
USP4-209ENST00000475873 TXNL4AP83876 142 aaKnown RBP3.64□□□□□ -1.83
USP4-209ENST00000475873 RUNX1Q01196 453 aa3.64□□□□□ -1.83
USP4-209ENST00000475873 SPIBQ01892 262 aa3.64□□□□□ -1.83
USP4-209ENST00000475873 EMX2Q04743 252 aa3.64□□□□□ -1.83
USP4-209ENST00000475873 MFGE8Q08431 387 aaPredicted RBP3.64□□□□□ -1.83
USP4-209ENST00000475873 CALCOCO2Q13137 446 aa3.64□□□□□ -1.83
USP4-209ENST00000475873 GPR50Q13585 617 aa3.64□□□□□ -1.83
USP4-209ENST00000475873 MEP1BQ16820 701 aa3.64□□□□□ -1.83
USP4-209ENST00000475873 PNLIPRP3Q17RR3 467 aa3.64□□□□□ -1.83
USP4-209ENST00000475873 ANKRD39Q53RE8 183 aa3.64□□□□□ -1.83
USP4-209ENST00000475873 CXorf66Q5JRM2 361 aaPredicted RBP3.64□□□□□ -1.83
USP4-209ENST00000475873 CFAP157Q5JU67 520 aa3.64□□□□□ -1.83
USP4-209ENST00000475873 ANXA8L1Q5VT79 327 aa3.64□□□□□ -1.83
USP4-209ENST00000475873 ZNF621Q6ZSS3 439 aa3.64□□□□□ -1.83
USP4-209ENST00000475873 TMPRSS11FQ6ZWK6 438 aa3.64□□□□□ -1.83
USP4-209ENST00000475873 DPY19L4Q7Z388 723 aa3.64□□□□□ -1.83
USP4-209ENST00000475873 C10orf107Q8IVU9 208 aa3.64□□□□□ -1.83
USP4-209ENST00000475873 ZDHHC23Q8IYP9 409 aa3.64□□□□□ -1.83
USP4-209ENST00000475873 LNX2Q8N448 690 aa3.64□□□□□ -1.83
USP4-209ENST00000475873 CD177Q8N6Q3 437 aa3.64□□□□□ -1.83
USP4-209ENST00000475873 OR13D1Q8NGV5 346 aa3.64□□□□□ -1.83
USP4-209ENST00000475873 NDNFQ8TB73 568 aa3.64□□□□□ -1.83
USP4-209ENST00000475873 MZB1Q8WU39 189 aa3.64□□□□□ -1.83
USP4-209ENST00000475873 PHLDA1Q8WV24 401 aaPredicted RBP3.64□□□□□ -1.83
USP4-209ENST00000475873 RPL3LQ92901 407 aaKnown RBP3.64□□□□□ -1.83
USP4-209ENST00000475873 TRIM63Q969Q1 353 aa3.64□□□□□ -1.83
USP4-209ENST00000475873 EME1Q96AY2 570 aa3.64□□□□□ -1.83
USP4-209ENST00000475873 SDSLQ96GA7 329 aa3.64□□□□□ -1.83
USP4-209ENST00000475873 COQ7Q99807 217 aa3.64□□□□□ -1.83
USP4-209ENST00000475873 NSRP1Q9H0G5 558 aaKnown RBP3.64□□□□□ -1.83
USP4-209ENST00000475873 TUBA4BQ9H853 241 aa3.64□□□□□ -1.83
USP4-209ENST00000475873 PLEKHA3Q9HB20 300 aa3.64□□□□□ -1.83
USP4-209ENST00000475873 TMEM27Q9HBJ8 222 aa3.64□□□□□ -1.83
USP4-209ENST00000475873 PNRC2Q9NPJ4 139 aaKnown RBP3.64□□□□□ -1.83
USP4-209ENST00000475873 TPSG1Q9NRR2 321 aa3.64□□□□□ -1.83
USP4-209ENST00000475873 ZDHHC18Q9NUE0 388 aa3.64□□□□□ -1.83
USP4-209ENST00000475873 CALML5Q9NZT1 146 aa3.64□□□□□ -1.83
USP4-209ENST00000475873 NLKQ9UBE8 527 aa3.64□□□□□ -1.83
USP4-209ENST00000475873 BTNL2Q9UIR0 455 aa3.64□□□□□ -1.83
USP4-209ENST00000475873 MOB4Q9Y3A3 225 aa3.64□□□□□ -1.83
USP4-209ENST00000475873 HSPE1-MOB4S4R3N1 261 aa3.64□□□□□ -1.83
USP4-209ENST00000475873 AGRNO00468 2067 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 GMNCA6NCL1 334 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 IZUMO1RA6ND01 250 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 FAM90A18PA6NE21 464 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 FAM90A16PA6NEW6 464 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 MSGN1A6NI15 193 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 FAM90A20PA6NIJ5 464 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 CPSF4LA6NMK7 179 aaKnown RBP3.63□□□□□ -1.83
USP4-209ENST00000475873 FAM90A9PA6NNJ1 464 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 FAM90A12PA8MX19 464 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 FAM90A5PA8MXJ8 464 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 C16orf90A8MZG2 172 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 E9PBE3 544 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 F5H5K5 113 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 OR7A10O76100 309 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 OR5F1O95221 314 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 CHEK2O96017 543 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 LCATP04180 440 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 S100A6P06703 90 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 ELANEP08246 267 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 FAM90A15PP0C7V4 464 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 FAM90A13PP0C7W8 464 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 FAM90A14PP0C7W9 464 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 FAM90A24PP0C7X0 464 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 DCTDP32321 178 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 CCT5P48643 541 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 PSMD7P51665 324 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 BLVRAP53004 296 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 RPL27P61353 136 aaKnown RBP3.63□□□□□ -1.83
USP4-209ENST00000475873 ACTA2P62736 377 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 ACTG2P63267 376 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 ACTC1P68032 377 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 ACTA1P68133 377 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 SLC35B1P78383 322 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 TNFRSF9Q07011 255 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 MPP2Q14168 576 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 PCLAFQ15004 111 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 KLHL12Q53G59 568 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 GLYATL3Q5SZD4 288 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 LCN8Q6JVE9 175 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 ZNF613Q6PF04 617 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 SMARCD3Q6STE5 483 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 KCTD8Q6ZWB6 473 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 MRPL21Q7Z2W9 205 aaKnown RBP3.63□□□□□ -1.83
USP4-209ENST00000475873 HDDC2Q7Z4H3 204 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 SLC35E3Q7Z769 313 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 LINC00471Q8N535 108 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 GVQW1Q8N7I0 195 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 SPC24Q8NBT2 197 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 GPR32P1Q8NGA4 272 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 OR6T1Q8NGN1 323 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 OR2T27Q8NH04 317 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 CHAC2Q8WUX2 184 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 TMEM255BQ8WV15 326 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 CAPSLQ8WWF8 208 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 TMEM106AQ96A25 262 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 NRBF2Q96F24 287 aa3.63□□□□□ -1.83
USP4-209ENST00000475873 RBP7Q96R05 134 aa3.63□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms