RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 LINC00597Q9H2U6 94 aa12.04□□□□□ -0.48
COL6A3-209ENST00000472056 TAS1R1Q7RTX1 841 aa12.04□□□□□ -0.48
COL6A3-209ENST00000472056 PFN4Q8NHR9 129 aa12.04□□□□□ -0.48
COL6A3-209ENST00000472056 RASL12Q9NYN1 266 aa12.04□□□□□ -0.48
COL6A3-209ENST00000472056 HIST3H3Q16695 136 aa12.04□□□□□ -0.48
COL6A3-209ENST00000472056 QSER1Q2KHR3 1735 aa12.04□□□□□ -0.48
COL6A3-209ENST00000472056 PRSS54Q6PEW0 395 aa12.04□□□□□ -0.48
COL6A3-209ENST00000472056 TBPL2Q6SJ96 375 aa12.04□□□□□ -0.48
COL6A3-209ENST00000472056 ZNF687Q8N1G0 1237 aa12.04□□□□□ -0.48
COL6A3-209ENST00000472056 Q96M85 177 aa12.04□□□□□ -0.48
COL6A3-209ENST00000472056 SH2D2AQ9NP31 389 aa12.04□□□□□ -0.48
COL6A3-209ENST00000472056 GPR84Q9NQS5 396 aa12.04□□□□□ -0.48
COL6A3-209ENST00000472056 CDC42EP3Q9UKI2 254 aa12.04□□□□□ -0.48
COL6A3-209ENST00000472056 LOC102724200A0A096LPH7 203 aaPredicted RBP12.04□□□□□ -0.48
COL6A3-209ENST00000472056 C5orf52A6NGY3 159 aa12.04□□□□□ -0.48
COL6A3-209ENST00000472056 OR52A4PA6NMU1 304 aa12.04□□□□□ -0.48
COL6A3-209ENST00000472056 CCSO14618 274 aa12.04□□□□□ -0.48
COL6A3-209ENST00000472056 DNPH1O43598 174 aa12.04□□□□□ -0.48
COL6A3-209ENST00000472056 GPANK1O95872 356 aa12.04□□□□□ -0.48
COL6A3-209ENST00000472056 C1SP09871 688 aa12.04□□□□□ -0.48
COL6A3-209ENST00000472056 NAT2P11245 290 aa12.04□□□□□ -0.48
COL6A3-209ENST00000472056 GJA4P35212 333 aa12.04□□□□□ -0.48
COL6A3-209ENST00000472056 CYB561P49447 251 aa12.04□□□□□ -0.48
COL6A3-209ENST00000472056 FAM53BQ14153 422 aa12.04□□□□□ -0.48
COL6A3-209ENST00000472056 CPEB2Q7Z5Q1 589 aaKnown RBP12.04□□□□□ -0.48
COL6A3-209ENST00000472056 SORBS1Q9BX66 1292 aaKnown RBP12.04□□□□□ -0.48
COL6A3-209ENST00000472056 PYCARD-AS1I3L0S3 204 aa12.03□□□□□ -0.48
COL6A3-209ENST00000472056 PGGT1BP53609 377 aa12.03□□□□□ -0.48
COL6A3-209ENST00000472056 PSMG4Q5JS54 123 aa12.03□□□□□ -0.48
COL6A3-209ENST00000472056 TCTN3Q6NUS6 607 aa12.03□□□□□ -0.48
COL6A3-209ENST00000472056 MEX3DQ86XN8 651 aaKnown RBP12.03□□□□□ -0.48
COL6A3-209ENST00000472056 C17orf78Q8N4C9 275 aa12.03□□□□□ -0.48
COL6A3-209ENST00000472056 PIK3IP1Q96FE7 263 aa12.03□□□□□ -0.48
COL6A3-209ENST00000472056 PTPRDP23468 1912 aa12.03□□□□□ -0.48
COL6A3-209ENST00000472056 PPOXP50336 477 aa12.03□□□□□ -0.48
COL6A3-209ENST00000472056 CTSCP53634 463 aa12.03□□□□□ -0.48
COL6A3-209ENST00000472056 PAFAH1B2P68402 229 aa12.03□□□□□ -0.48
COL6A3-209ENST00000472056 INPP5JQ15735 1006 aaPredicted RBP12.03□□□□□ -0.48
COL6A3-209ENST00000472056 PERPQ96FX8 193 aa12.03□□□□□ -0.48
COL6A3-209ENST00000472056 OBP2AQ9NY56 170 aa12.03□□□□□ -0.48
COL6A3-209ENST00000472056 PISDQ9UG56 409 aa12.03□□□□□ -0.48
COL6A3-209ENST00000472056 TBX21Q9UL17 535 aa12.03□□□□□ -0.48
COL6A3-209ENST00000472056 ZNF256Q9Y2P7 627 aaPredicted RBP12.03□□□□□ -0.48
COL6A3-209ENST00000472056 A0A1B0GTQ1 180 aa12.03□□□□□ -0.48
COL6A3-209ENST00000472056 CD1CP29017 333 aa12.03□□□□□ -0.48
COL6A3-209ENST00000472056 LIM2P55344 173 aa12.03□□□□□ -0.48
COL6A3-209ENST00000472056 DOLPP1Q86YN1 238 aa12.03□□□□□ -0.48
COL6A3-209ENST00000472056 THYN1Q9P016 225 aa12.03□□□□□ -0.48
COL6A3-209ENST00000472056 XIRP1Q702N8 1843 aaKnown RBP12.03□□□□□ -0.48
COL6A3-209ENST00000472056 AKR7A2O43488 359 aa12.03□□□□□ -0.48
COL6A3-209ENST00000472056 CLEC2LP0C7M8 214 aa12.03□□□□□ -0.48
COL6A3-209ENST00000472056 TTC32Q5I0X7 151 aa12.03□□□□□ -0.48
COL6A3-209ENST00000472056 ZNF511Q8NB15 262 aa12.03□□□□□ -0.48
COL6A3-209ENST00000472056 OR5AU1Q8NGC0 362 aa12.03□□□□□ -0.48
COL6A3-209ENST00000472056 OR52N4Q8NGI2 321 aa12.03□□□□□ -0.48
COL6A3-209ENST00000472056 PHOSPHO2Q8TCD6 241 aa12.03□□□□□ -0.48
COL6A3-209ENST00000472056 DYRK2Q92630 601 aa12.03□□□□□ -0.48
COL6A3-209ENST00000472056 ULBP3Q9BZM4 244 aa12.03□□□□□ -0.48
COL6A3-209ENST00000472056 SRP14P37108 136 aaKnown RBP12.03□□□□□ -0.48
COL6A3-209ENST00000472056 SNRPEP62304 92 aaKnown RBP12.03□□□□□ -0.48
COL6A3-209ENST00000472056 LYSMD4Q5XG99 296 aa12.03□□□□□ -0.48
COL6A3-209ENST00000472056 DYSFO75923 2080 aa12.03□□□□□ -0.48
COL6A3-209ENST00000472056 PPP6CO00743 305 aa12.03□□□□□ -0.48
COL6A3-209ENST00000472056 NAAAQ02083 359 aa12.03□□□□□ -0.48
COL6A3-209ENST00000472056 CCL14Q16627 93 aa12.03□□□□□ -0.48
COL6A3-209ENST00000472056 TUSC1Q2TAM9 212 aa12.03□□□□□ -0.48
COL6A3-209ENST00000472056 ANKLE1Q8NAG6 615 aa12.03□□□□□ -0.48
COL6A3-209ENST00000472056 MARCH1Q8TCQ1 289 aa12.03□□□□□ -0.48
COL6A3-209ENST00000472056 HSD17B8Q92506 261 aa12.03□□□□□ -0.48
COL6A3-209ENST00000472056 SIRT3Q9NTG7 399 aaPredicted RBP12.03□□□□□ -0.48
COL6A3-209ENST00000472056 UBE2L5PA0A1B0GUS4 154 aa12.03□□□□□ -0.48
COL6A3-209ENST00000472056 AQP7O14520 342 aa12.03□□□□□ -0.48
COL6A3-209ENST00000472056 ZNF737O75373 536 aa12.03□□□□□ -0.48
COL6A3-209ENST00000472056 MT-ND6P03923 174 aa12.03□□□□□ -0.48
COL6A3-209ENST00000472056 RPS4Y1P22090 263 aaKnown RBP12.03□□□□□ -0.48
COL6A3-209ENST00000472056 SLC6A12P48065 614 aa12.03□□□□□ -0.48
COL6A3-209ENST00000472056 RPL24P83731 157 aaKnown RBP12.03□□□□□ -0.48
COL6A3-209ENST00000472056 RTP2Q5QGT7 225 aa12.03□□□□□ -0.48
COL6A3-209ENST00000472056 ACY3Q96HD9 319 aa12.03□□□□□ -0.48
COL6A3-209ENST00000472056 ST3GAL6Q9Y274 331 aa12.03□□□□□ -0.48
COL6A3-209ENST00000472056 WDR1O75083 606 aa12.02□□□□□ -0.48
COL6A3-209ENST00000472056 SCRG1O75711 98 aa12.02□□□□□ -0.48
COL6A3-209ENST00000472056 MENTQ9BUN1 341 aa12.02□□□□□ -0.48
COL6A3-209ENST00000472056 AP5S1Q9NUS5 200 aa12.02□□□□□ -0.48
COL6A3-209ENST00000472056 OR5G3P0C626 314 aa12.02□□□□□ -0.48
COL6A3-209ENST00000472056 RPL29P47914 159 aaKnown RBP12.02□□□□□ -0.48
COL6A3-209ENST00000472056 CGGBP1Q9UFW8 167 aaPredicted RBP12.02□□□□□ -0.48
COL6A3-209ENST00000472056 SERTM1A2A2V5 107 aa12.02□□□□□ -0.49
COL6A3-209ENST00000472056 KCNAB3O43448 404 aa12.02□□□□□ -0.49
COL6A3-209ENST00000472056 HLA-GP17693 338 aa12.02□□□□□ -0.49
COL6A3-209ENST00000472056 FUT3P21217 361 aa12.02□□□□□ -0.49
COL6A3-209ENST00000472056 SHBQ15464 509 aa12.02□□□□□ -0.49
COL6A3-209ENST00000472056 OR2A2Q6IF42 318 aa12.02□□□□□ -0.49
COL6A3-209ENST00000472056 USP53Q70EK8 1073 aa12.02□□□□□ -0.49
COL6A3-209ENST00000472056 SEZ6L2Q6UXD5 910 aa12.02□□□□□ -0.49
COL6A3-209ENST00000472056 ALKAL1Q6UXT8 129 aa12.02□□□□□ -0.49
COL6A3-209ENST00000472056 P2RY12Q9H244 342 aa12.02□□□□□ -0.49
COL6A3-209ENST00000472056 TXNRD2Q9NNW7 524 aa12.02□□□□□ -0.49
COL6A3-209ENST00000472056 OR3A1P47881 315 aa12.02□□□□□ -0.49
COL6A3-209ENST00000472056 EMP3P54852 163 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms