RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 FAM90A8PA6NJQ4 464 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 SLC22A20A6NK97 555 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 FAM90A7PA6NKC0 464 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 FAM90A22PA8MWA6 464 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 FAM90A12PA8MX19 464 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 FAM90A5PA8MXJ8 464 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 FAM90A23PA8MXZ1 464 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 NKX2-8O15522 239 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 SSX5O60225 188 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 ATP6V1G1O75348 118 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 CRTAPO75718 401 aaPredicted RBP6.61□□□□□ -1.35
COL6A3-208ENST00000468792 MPIG6BO95866 241 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 CST4P01036 141 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 NRASP01111 189 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 AMY2AP04746 511 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 FAM90A15PP0C7V4 464 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 FAM90A13PP0C7W8 464 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 FAM90A14PP0C7W9 464 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 FAM90A24PP0C7X0 464 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 GSTT2P0CG29 244 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 MGMTP16455 207 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 ANXA7P20073 488 aaKnown RBP6.61□□□□□ -1.35
COL6A3-208ENST00000468792 C4BPBP20851 252 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 AGTR1P30556 359 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 RFC3P40938 356 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 ECI1P42126 302 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 ATP1B3P54709 279 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 MTCP1P56278 107 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 GNG2P59768 71 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 SRYQ05066 204 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 SRSF4Q08170 494 aaKnown RBP6.61□□□□□ -1.35
COL6A3-208ENST00000468792 PLAC9Q5JTB6 97 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 RNFT1Q5M7Z0 435 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 PLXDC2Q6UX71 529 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 IDO2Q6ZQW0 420 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 ZNF767PQ75MW2 155 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 TRAPPC6BQ86SZ2 158 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 SLC25A42Q86VD7 318 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 HOGA1Q86XE5 327 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 C9orf62Q8N4C0 152 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 FTMTQ8N4E7 242 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 CHST4Q8NCG5 386 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 CPEB3Q8NE35 698 aaKnown RBP6.61□□□□□ -1.35
COL6A3-208ENST00000468792 CSNK2A3Q8NEV1 391 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 FDCSPQ8NFU4 85 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 OR13C8Q8NGS7 320 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 AKR7LQ8NHP1 331 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 FGFBP3Q8TAT2 258 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 ZNF431Q8TF32 576 aaPredicted RBP6.61□□□□□ -1.35
COL6A3-208ENST00000468792 TNFAIP8L1Q8WVP5 186 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 NANOS1Q8WY41 292 aaKnown RBP6.61□□□□□ -1.35
COL6A3-208ENST00000468792 SNAPC3Q92966 411 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 APOBEC3DQ96AK3 386 aaPredicted RBP6.61□□□□□ -1.35
COL6A3-208ENST00000468792 POM121L2Q96KW2 1035 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 Q96M66 194 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 SCGB3A2Q96PL1 93 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 TMEM246Q9BRR3 403 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 BEX2Q9BXY8 128 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 KRTAP3-3Q9BYR6 98 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 KRTAP3-2Q9BYR7 98 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 CHST6Q9GZX3 395 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 METTL9Q9H1A3 318 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 LDAHQ9H6V9 325 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 CALHM2Q9HA72 323 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 SPRR3Q9UBC9 169 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 CLCF1Q9UBD9 225 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 MGAT4CQ9UBM8 478 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 KCNN3Q9UGI6 736 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 EDARQ9UNE0 448 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 SLC7A11Q9UPY5 501 aa6.61□□□□□ -1.35
COL6A3-208ENST00000468792 DNAJC13O75165 2243 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 RTTNQ86VV8 2226 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 ZNF407Q9C0G0 2248 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 DMXL1Q9Y485 3027 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 LOC100509620A0A075B734 347 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 TMEM82A0PJX8 343 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 A6NL46 340 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 HMSDA8MTL9 139 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 SOCS1O15524 211 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 RRP8O43159 456 aaKnown RBP6.6□□□□□ -1.35
COL6A3-208ENST00000468792 IL2RAP01589 272 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 FCER2P06734 321 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 OR4E1P0C645 316 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 VSIG10L2P0DP72 767 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 EDN3P14138 238 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 GNB3P16520 340 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 TUBG1P23258 451 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 DTYMKP23919 212 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 DNASE1P24855 282 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 TAS2R31P59538 309 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 TAS2R46P59540 309 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 TGFBR3Q03167 851 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 ZNF92Q03936 586 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 PLP2Q04941 152 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 MALLQ13021 153 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 CLN3Q13286 438 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 SF3B4Q15427 424 aaKnown RBP eCLIP6.6□□□□□ -1.35
COL6A3-208ENST00000468792 SURF2Q15527 256 aaPredicted RBP6.6□□□□□ -1.35
COL6A3-208ENST00000468792 GRK1Q15835 563 aa6.6□□□□□ -1.35
COL6A3-208ENST00000468792 SRSF7Q16629 238 aaKnown RBP eCLIP6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms