RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 GPR84Q9NQS5 396 aa9.96□□□□□ -0.82
USP40-210ENST00000454354 H2AFY2Q9P0M6 372 aaPredicted RBP9.96□□□□□ -0.82
USP40-210ENST00000454354 DUX4Q9UBX2 424 aa9.96□□□□□ -0.82
USP40-210ENST00000454354 RPUSD1Q9UJJ7 312 aaKnown RBP9.96□□□□□ -0.82
USP40-210ENST00000454354 IKZF2Q9UKS7 526 aa9.96□□□□□ -0.82
USP40-210ENST00000454354 OAZ3Q9UMX2 235 aa9.96□□□□□ -0.82
USP40-210ENST00000454354 SOX21Q9Y651 276 aaPredicted RBP9.96□□□□□ -0.82
USP40-210ENST00000454354 TRRAPQ9Y4A5 3859 aa9.96□□□□□ -0.82
USP40-210ENST00000454354 GPR37O15354 613 aa9.95□□□□□ -0.82
USP40-210ENST00000454354 CIB2O75838 187 aa9.95□□□□□ -0.82
USP40-210ENST00000454354 DHRS3O75911 302 aa9.95□□□□□ -0.82
USP40-210ENST00000454354 TOX4O94842 621 aa9.95□□□□□ -0.82
USP40-210ENST00000454354 TTRP02766 147 aa9.95□□□□□ -0.82
USP40-210ENST00000454354 SFTPBP07988 381 aa9.95□□□□□ -0.82
USP40-210ENST00000454354 AMY2BP19961 511 aa9.95□□□□□ -0.82
USP40-210ENST00000454354 GPM6AP51674 278 aa9.95□□□□□ -0.82
USP40-210ENST00000454354 ACTR3P61158 418 aa9.95□□□□□ -0.82
USP40-210ENST00000454354 GNG3P63215 75 aa9.95□□□□□ -0.82
USP40-210ENST00000454354 EGR3Q06889 387 aa9.95□□□□□ -0.82
USP40-210ENST00000454354 RIPPLY1Q0D2K3 151 aa9.95□□□□□ -0.82
USP40-210ENST00000454354 POU4F2Q12837 409 aa9.95□□□□□ -0.82
USP40-210ENST00000454354 FOXL1Q12952 345 aa9.95□□□□□ -0.82
USP40-210ENST00000454354 PDCD1Q15116 288 aa9.95□□□□□ -0.82
USP40-210ENST00000454354 AWAT1Q58HT5 328 aa9.95□□□□□ -0.82
USP40-210ENST00000454354 METTL11BQ5VVY1 283 aa9.95□□□□□ -0.82
USP40-210ENST00000454354 BRD3OSQ6XYD6 125 aa9.95□□□□□ -0.82
USP40-210ENST00000454354 ZNF788Q6ZQV5 615 aa9.95□□□□□ -0.82
USP40-210ENST00000454354 Q6ZSR3 168 aa9.95□□□□□ -0.82
USP40-210ENST00000454354 FGFRL1Q8N441 504 aa9.95□□□□□ -0.82
USP40-210ENST00000454354 OR5A2Q8NGI9 324 aa9.95□□□□□ -0.82
USP40-210ENST00000454354 C8orf46Q8TAG6 207 aa9.95□□□□□ -0.82
USP40-210ENST00000454354 ST8SIA4Q92187 359 aa9.95□□□□□ -0.82
USP40-210ENST00000454354 SLC25A28Q96A46 364 aa9.95□□□□□ -0.82
USP40-210ENST00000454354 SEH1LQ96EE3 360 aa9.95□□□□□ -0.82
USP40-210ENST00000454354 WDFY2Q96P53 400 aa9.95□□□□□ -0.82
USP40-210ENST00000454354 DUX5Q96PT3 197 aa9.95□□□□□ -0.82
USP40-210ENST00000454354 HIST1H2AAQ96QV6 131 aa9.95□□□□□ -0.82
USP40-210ENST00000454354 IL4I1Q96RQ9 567 aa9.95□□□□□ -0.82
USP40-210ENST00000454354 CCL13Q99616 98 aa9.95□□□□□ -0.82
USP40-210ENST00000454354 WDR13Q9H1Z4 485 aa9.95□□□□□ -0.82
USP40-210ENST00000454354 OR51I2Q9H344 312 aa9.95□□□□□ -0.82
USP40-210ENST00000454354 WARS2Q9UGM6 360 aaKnown RBP9.95□□□□□ -0.82
USP40-210ENST00000454354 MRM2Q9UI43 246 aaKnown RBP9.95□□□□□ -0.82
USP40-210ENST00000454354 R4GMQ9 66 aa9.95□□□□□ -0.82
USP40-210ENST00000454354 CENPVL3A0A0U1RRI6 287 aa9.94□□□□□ -0.82
USP40-210ENST00000454354 MDFIC2A0A1B0GVS7 189 aa9.94□□□□□ -0.82
USP40-210ENST00000454354 OR5B21A6NL26 309 aa9.94□□□□□ -0.82
USP40-210ENST00000454354 DHRS7CA6NNS2 312 aa9.94□□□□□ -0.82
USP40-210ENST00000454354 ZNF670-ZNF695F2Z2N8 137 aa9.94□□□□□ -0.82
USP40-210ENST00000454354 LOC110117498-PIK3R3F6TDL0 507 aa9.94□□□□□ -0.82
USP40-210ENST00000454354 AKR7A2O43488 359 aa9.94□□□□□ -0.82
USP40-210ENST00000454354 MTRF1O75570 445 aaKnown RBP9.94□□□□□ -0.82
USP40-210ENST00000454354 FAHP16930 419 aa9.94□□□□□ -0.82
USP40-210ENST00000454354 HTR1FP30939 366 aa9.94□□□□□ -0.82
USP40-210ENST00000454354 DEFB112Q30KQ8 113 aa9.94□□□□□ -0.82
USP40-210ENST00000454354 CEP78Q5JTW2 689 aa9.94□□□□□ -0.82
USP40-210ENST00000454354 TMEM42Q69YG0 159 aa9.94□□□□□ -0.82
USP40-210ENST00000454354 KCTD8Q6ZWB6 473 aa9.94□□□□□ -0.82
USP40-210ENST00000454354 THAP5Q7Z6K1 395 aa9.94□□□□□ -0.82
USP40-210ENST00000454354 COMMD2Q86X83 199 aa9.94□□□□□ -0.82
USP40-210ENST00000454354 ELMOD2Q8IZ81 293 aa9.94□□□□□ -0.82
USP40-210ENST00000454354 KIR3DL3Q8N743 410 aa9.94□□□□□ -0.82
USP40-210ENST00000454354 C3orf56Q8N813 242 aa9.94□□□□□ -0.82
USP40-210ENST00000454354 OR51G2Q8NGK0 314 aa9.94□□□□□ -0.82
USP40-210ENST00000454354 OR8J1Q8NGP2 316 aa9.94□□□□□ -0.82
USP40-210ENST00000454354 ANGPTL6Q8NI99 470 aa9.94□□□□□ -0.82
USP40-210ENST00000454354 PPP1R14AQ96A00 147 aa9.94□□□□□ -0.82
USP40-210ENST00000454354 FAM71F1Q96KD3 344 aaPredicted RBP9.94□□□□□ -0.82
USP40-210ENST00000454354 GAFA1Q96PS6 74 aa9.94□□□□□ -0.82
USP40-210ENST00000454354 APOL4Q9BPW4 351 aa9.94□□□□□ -0.82
USP40-210ENST00000454354 RBM4BQ9BQ04 359 aaKnown RBP9.94□□□□□ -0.82
USP40-210ENST00000454354 DCTN5Q9BTE1 182 aa9.94□□□□□ -0.82
USP40-210ENST00000454354 SEMA6AQ9H2E6 1030 aa9.94□□□□□ -0.82
USP40-210ENST00000454354 NOX4Q9NPH5 578 aa9.94□□□□□ -0.82
USP40-210ENST00000454354 DNAJB11Q9UBS4 358 aa9.94□□□□□ -0.82
USP40-210ENST00000454354 ENPP5Q9UJA9 477 aa9.94□□□□□ -0.82
USP40-210ENST00000454354 PIGLQ9Y2B2 252 aa9.94□□□□□ -0.82
USP40-210ENST00000454354 KPTNQ9Y664 436 aa9.94□□□□□ -0.82
USP40-210ENST00000454354 V9GYS6 101 aa9.94□□□□□ -0.82
USP40-210ENST00000454354 A0A1B0GTI1 187 aa9.93□□□□□ -0.82
USP40-210ENST00000454354 NKX6-3A6NJ46 265 aa9.93□□□□□ -0.82
USP40-210ENST00000454354 ZNF732B4DXR9 585 aa9.93□□□□□ -0.82
USP40-210ENST00000454354 SIGLEC5O15389 551 aa9.93□□□□□ -0.82
USP40-210ENST00000454354 MAGEB4O15481 346 aaPredicted RBP9.93□□□□□ -0.82
USP40-210ENST00000454354 NDUFB3O43676 98 aa9.93□□□□□ -0.82
USP40-210ENST00000454354 RHBDL1O75783 438 aa9.93□□□□□ -0.82
USP40-210ENST00000454354 CCL1P22362 96 aa9.93□□□□□ -0.82
USP40-210ENST00000454354 POLR2IP36954 125 aaKnown RBP9.93□□□□□ -0.82
USP40-210ENST00000454354 ARF6P62330 175 aa9.93□□□□□ -0.82
USP40-210ENST00000454354 TMED1Q13445 227 aa9.93□□□□□ -0.82
USP40-210ENST00000454354 CDONQ4KMG0 1287 aa9.93□□□□□ -0.82
USP40-210ENST00000454354 LRRC10Q5BKY1 277 aa9.93□□□□□ -0.82
USP40-210ENST00000454354 ZNF684Q5T5D7 378 aa9.93□□□□□ -0.82
USP40-210ENST00000454354 BCL2L15Q5TBC7 163 aa9.93□□□□□ -0.82
USP40-210ENST00000454354 RUSC1-AS1Q66K80 236 aa9.93□□□□□ -0.82
USP40-210ENST00000454354 Q6YL49 198 aa9.93□□□□□ -0.82
USP40-210ENST00000454354 SSX6Q7RTT6 188 aa9.93□□□□□ -0.82
USP40-210ENST00000454354 OR5T2Q8NGG2 359 aa9.93□□□□□ -0.82
USP40-210ENST00000454354 GATAD2BQ8WXI9 593 aa9.93□□□□□ -0.82
USP40-210ENST00000454354 AQP3Q92482 292 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms