RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 ZFAND6Q6FIF0 208 aa1.82□□□□□ -2.12
USP40-209ENST00000452724 MORN3Q6PF18 240 aaPredicted RBP1.82□□□□□ -2.12
USP40-209ENST00000452724 NT5DC3Q86UY8 548 aa1.82□□□□□ -2.12
USP40-209ENST00000452724 TRAM1L1Q8N609 369 aa1.82□□□□□ -2.12
USP40-209ENST00000452724 LINC00469Q8N7U9 141 aa1.82□□□□□ -2.12
USP40-209ENST00000452724 WDR31Q8NA23 367 aa1.82□□□□□ -2.12
USP40-209ENST00000452724 BBOF1Q8ND07 529 aa1.82□□□□□ -2.12
USP40-209ENST00000452724 GLYATL2Q8WU03 294 aa1.82□□□□□ -2.12
USP40-209ENST00000452724 SMARCD1Q96GM5 515 aa1.82□□□□□ -2.12
USP40-209ENST00000452724 ZBED3Q96IU2 234 aaPredicted RBP1.82□□□□□ -2.12
USP40-209ENST00000452724 UBE2E2Q96LR5 201 aa1.82□□□□□ -2.12
USP40-209ENST00000452724 CSPG4P5Q96PW8 444 aa1.82□□□□□ -2.12
USP40-209ENST00000452724 TMEM175Q9BSA9 504 aa1.82□□□□□ -2.12
USP40-209ENST00000452724 NAA50Q9GZZ1 169 aaKnown RBP1.82□□□□□ -2.12
USP40-209ENST00000452724 CA10Q9NS85 328 aa1.82□□□□□ -2.12
USP40-209ENST00000452724 HMGXB4Q9UGU5 601 aa1.82□□□□□ -2.12
USP40-209ENST00000452724 CES1P1Q9UKY3 287 aa1.82□□□□□ -2.12
USP40-209ENST00000452724 RAB22AQ9UL26 194 aa1.82□□□□□ -2.12
USP40-209ENST00000452724 IGHV6-1A0A0B4J1U7 121 aa1.81□□□□□ -2.12
USP40-209ENST00000452724 GOLGA6L4A6NEF3 574 aa1.81□□□□□ -2.12
USP40-209ENST00000452724 SLC22A20A6NK97 555 aa1.81□□□□□ -2.12
USP40-209ENST00000452724 KLHL2O95198 593 aa1.81□□□□□ -2.12
USP40-209ENST00000452724 TTC4O95801 387 aa1.81□□□□□ -2.12
USP40-209ENST00000452724 IGKV1-39P01597 117 aa1.81□□□□□ -2.12
USP40-209ENST00000452724 IGHV1-46P01743 117 aa1.81□□□□□ -2.12
USP40-209ENST00000452724 IGKV1D-39P04432 117 aa1.81□□□□□ -2.12
USP40-209ENST00000452724 HLA-DMAP28067 261 aa1.81□□□□□ -2.12
USP40-209ENST00000452724 CLDN6P56747 220 aa1.81□□□□□ -2.12
USP40-209ENST00000452724 YWHAEP62258 255 aaKnown RBP1.81□□□□□ -2.12
USP40-209ENST00000452724 ZNF678Q5SXM1 525 aa1.81□□□□□ -2.12
USP40-209ENST00000452724 PLCXD3Q63HM9 321 aa1.81□□□□□ -2.12
USP40-209ENST00000452724 FAM131AQ6UXB0 335 aa1.81□□□□□ -2.12
USP40-209ENST00000452724 CMTM8Q8IZV2 173 aa1.81□□□□□ -2.12
USP40-209ENST00000452724 OR52K2Q8NGK3 314 aa1.81□□□□□ -2.12
USP40-209ENST00000452724 GPX8Q8TED1 209 aa1.81□□□□□ -2.12
USP40-209ENST00000452724 ISOC2Q96AB3 205 aa1.81□□□□□ -2.12
USP40-209ENST00000452724 MRPL48Q96GC5 212 aaKnown RBP1.81□□□□□ -2.12
USP40-209ENST00000452724 NAPGQ99747 312 aaPredicted RBP1.81□□□□□ -2.12
USP40-209ENST00000452724 MS4A8Q9BY19 250 aa1.81□□□□□ -2.12
USP40-209ENST00000452724 TBL1XR1Q9BZK7 514 aa1.81□□□□□ -2.12
USP40-209ENST00000452724 FANCEQ9HB96 536 aa1.81□□□□□ -2.12
USP40-209ENST00000452724 TMEM100Q9NV29 134 aa1.81□□□□□ -2.12
USP40-209ENST00000452724 TAS2R1Q9NYW7 299 aa1.81□□□□□ -2.12
USP40-209ENST00000452724 ADA2Q9NZK5 511 aa1.81□□□□□ -2.12
USP40-209ENST00000452724 THADAQ6YHU6 1953 aa1.81□□□□□ -2.12
USP40-209ENST00000452724 TMEM72A0PK05 275 aa1.8□□□□□ -2.12
USP40-209ENST00000452724 HACD1B0YJ81 288 aa1.8□□□□□ -2.12
USP40-209ENST00000452724 H3BN98 237 aa1.8□□□□□ -2.12
USP40-209ENST00000452724 LCA5LO95447 670 aa1.8□□□□□ -2.12
USP40-209ENST00000452724 FSTL3O95633 263 aa1.8□□□□□ -2.12
USP40-209ENST00000452724 ZNF35P13682 527 aa1.8□□□□□ -2.12
USP40-209ENST00000452724 LGALS3P17931 250 aaKnown RBP1.8□□□□□ -2.12
USP40-209ENST00000452724 TAS2R39P59534 338 aa1.8□□□□□ -2.12
USP40-209ENST00000452724 RPL18AQ02543 176 aaKnown RBP1.8□□□□□ -2.12
USP40-209ENST00000452724 BIKQ13323 160 aa1.8□□□□□ -2.12
USP40-209ENST00000452724 MAPRE2Q15555 327 aa1.8□□□□□ -2.12
USP40-209ENST00000452724 KRTAP21-2Q3LI59 83 aa1.8□□□□□ -2.12
USP40-209ENST00000452724 DEFB134Q4QY38 66 aa1.8□□□□□ -2.12
USP40-209ENST00000452724 TPRG1LQ5T0D9 272 aa1.8□□□□□ -2.12
USP40-209ENST00000452724 FAM104BQ5XKR9 115 aa1.8□□□□□ -2.12
USP40-209ENST00000452724 LINC00336Q6ZUF6 198 aa1.8□□□□□ -2.12
USP40-209ENST00000452724 PDPNQ86YL7 162 aa1.8□□□□□ -2.12
USP40-209ENST00000452724 DAW1Q8N136 415 aa1.8□□□□□ -2.12
USP40-209ENST00000452724 RNF10Q8N5U6 811 aaKnown RBP1.8□□□□□ -2.12
USP40-209ENST00000452724 NAT6Q93015 286 aa1.8□□□□□ -2.12
USP40-209ENST00000452724 Q96MT0 163 aa1.8□□□□□ -2.12
USP40-209ENST00000452724 ARV1Q9H2C2 271 aa1.8□□□□□ -2.12
USP40-209ENST00000452724 C8orf33Q9H7E9 229 aaPredicted RBP1.8□□□□□ -2.12
USP40-209ENST00000452724 PRSS16Q9NQE7 514 aa1.8□□□□□ -2.12
USP40-209ENST00000452724 ZNF492Q9P255 531 aa1.8□□□□□ -2.12
USP40-209ENST00000452724 PPIL1Q9Y3C6 166 aa1.8□□□□□ -2.12
USP40-209ENST00000452724 JCADQ9P266 1359 aa1.8□□□□□ -2.12
USP40-209ENST00000452724 ZNF608Q9ULD9 1512 aaPredicted RBP1.8□□□□□ -2.12
USP40-209ENST00000452724 A0A0G2JMP0 313 aa1.79□□□□□ -2.12
USP40-209ENST00000452724 A0A0X1KG70 313 aa1.79□□□□□ -2.12
USP40-209ENST00000452724 ZNF99A8MXY4 864 aaPredicted RBP1.79□□□□□ -2.12
USP40-209ENST00000452724 C4orf51C9J302 202 aa1.79□□□□□ -2.12
USP40-209ENST00000452724 NRASP01111 189 aa1.79□□□□□ -2.12
USP40-209ENST00000452724 HRASP01112 189 aa1.79□□□□□ -2.12
USP40-209ENST00000452724 KRASP01116 189 aa1.79□□□□□ -2.12
USP40-209ENST00000452724 TPM2P07951 284 aa1.79□□□□□ -2.12
USP40-209ENST00000452724 HRES1P13985 223 aa1.79□□□□□ -2.12
USP40-209ENST00000452724 ARL2P36404 184 aa1.79□□□□□ -2.12
USP40-209ENST00000452724 RAB11AP62491 216 aa1.79□□□□□ -2.12
USP40-209ENST00000452724 GRB2P62993 217 aaKnown RBP1.79□□□□□ -2.12
USP40-209ENST00000452724 PAFAH1B2P68402 229 aa1.79□□□□□ -2.12
USP40-209ENST00000452724 ADIGQ0VDE8 80 aa1.79□□□□□ -2.12
USP40-209ENST00000452724 IHHQ14623 411 aa1.79□□□□□ -2.12
USP40-209ENST00000452724 TSC22D1Q15714 1073 aa1.79□□□□□ -2.12
USP40-209ENST00000452724 RAB11BQ15907 218 aa1.79□□□□□ -2.12
USP40-209ENST00000452724 APOBEC3HQ6NTF7 200 aaKnown RBP1.79□□□□□ -2.12
USP40-209ENST00000452724 OR10Z1Q8NGY1 313 aa1.79□□□□□ -2.12
USP40-209ENST00000452724 STMN4Q9H169 189 aaPredicted RBP1.79□□□□□ -2.12
USP40-209ENST00000452724 OR51B5Q9H339 312 aa1.79□□□□□ -2.12
USP40-209ENST00000452724 TRIM45Q9H8W5 580 aaPredicted RBP1.79□□□□□ -2.12
USP40-209ENST00000452724 SND1-IT1Q9HBX3 110 aa1.79□□□□□ -2.12
USP40-209ENST00000452724 ZNF302Q9NR11 478 aa1.79□□□□□ -2.12
USP40-209ENST00000452724 STX18Q9P2W9 335 aaKnown RBP1.79□□□□□ -2.12
USP40-209ENST00000452724 VAX2Q9UIW0 290 aa1.79□□□□□ -2.12
USP40-209ENST00000452724 SLC22A7Q9Y694 548 aa1.79□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms