RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 HES1Q14469 280 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 IAH1Q2TAA2 248 aaPredicted RBP6.53□□□□□ -1.36
SYNE1-213ENST00000448038 SFRP5Q5T4F7 317 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 OR2W3Q7Z3T1 314 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 CATSPERDQ86XM0 798 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 ST7LQ8TDW4 575 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 UPRTQ96BW1 309 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 FAM122AQ96E09 287 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 SRRQ9GZT4 340 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 FLVCR1Q9Y5Y0 555 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 TMEM272A0A1B0GTI8 110 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 ANKRD33BA6NCL7 494 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 AHRRA9YTQ3 701 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 C9orf172C9J069 976 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 ABCD4O14678 606 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 CD3EP07766 207 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 OR3A4PP47883 348 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 RFX2P48378 723 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 BTG1P62324 171 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 PNLIPRP3Q17RR3 467 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 ZNF808Q8N4W9 903 aaPredicted RBP6.53□□□□□ -1.36
SYNE1-213ENST00000448038 SMIM4Q8WVI0 70 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 HAS2Q92819 552 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 TAAR3PQ9P1P4 343 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 KIF25Q9UIL4 384 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 OR4C45A6NMZ5 311 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 K7EPK0 472 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 CDC14BO60729 498 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 IFNA1P01562 189 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 UMODP07911 640 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 TBPP20226 339 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 SSTR2P30874 369 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 DYRK1AQ13627 763 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 GK2Q14410 553 aaPredicted RBP6.53□□□□□ -1.36
SYNE1-213ENST00000448038 BAK1Q16611 211 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 FAM214BQ7L5A3 538 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 FAM71E2Q8N5Q1 922 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 GPX7Q96SL4 187 aaPredicted RBP6.53□□□□□ -1.36
SYNE1-213ENST00000448038 CNTD2Q9H8S5 307 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 MRPS18AQ9NVS2 196 aaKnown RBP6.53□□□□□ -1.36
SYNE1-213ENST00000448038 SDHAF2Q9NX18 166 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 PPP1R3CQ9UQK1 317 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 TICRRQ7Z2Z1 1910 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 CYB5BO43169 146 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 NME2P1O60361 137 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 TXNDC12O95881 172 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 NME2P22392 152 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 TNFAIP6P98066 277 aaPredicted RBP6.53□□□□□ -1.36
SYNE1-213ENST00000448038 MICBQ29980 383 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 TIPARPQ7Z3E1 657 aaKnown RBP6.53□□□□□ -1.36
SYNE1-213ENST00000448038 CCDC190Q86UF4 302 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 FAM58AQ8N1B3 248 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 OR4D6Q8NGJ1 314 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 ZNF486Q96H40 463 aaPredicted RBP6.53□□□□□ -1.36
SYNE1-213ENST00000448038 IMMP1LQ96LU5 166 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 SLC7A10Q9NS82 523 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 OR5V1Q9UGF6 321 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 OSGIN2Q9Y236 505 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 MPC1Q9Y5U8 109 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 ACACAQ13085 2346 aa6.53□□□□□ -1.36
SYNE1-213ENST00000448038 IGKV1D-42A0A075B6H8 117 aa6.52□□□□□ -1.37
SYNE1-213ENST00000448038 TMEM200CA6NKL6 621 aa6.52□□□□□ -1.37
SYNE1-213ENST00000448038 OR5B21A6NL26 309 aa6.52□□□□□ -1.37
SYNE1-213ENST00000448038 C16orf97H3BN30 126 aa6.52□□□□□ -1.37
SYNE1-213ENST00000448038 MSTNO14793 375 aa6.52□□□□□ -1.37
SYNE1-213ENST00000448038 TPT1P13693 172 aaKnown RBP6.52□□□□□ -1.37
SYNE1-213ENST00000448038 MMP15P51511 669 aa6.52□□□□□ -1.37
SYNE1-213ENST00000448038 INO80CQ6PI98 192 aaPredicted RBP6.52□□□□□ -1.37
SYNE1-213ENST00000448038 CMTM3Q96MX0 182 aa6.52□□□□□ -1.37
SYNE1-213ENST00000448038 SLC17A5Q9NRA2 495 aa6.52□□□□□ -1.37
SYNE1-213ENST00000448038 CHCHD2Q9Y6H1 151 aaPredicted RBP6.52□□□□□ -1.37
SYNE1-213ENST00000448038 MS4A18H0YCH9 400 aa6.52□□□□□ -1.37
SYNE1-213ENST00000448038 TNFSF12O43508 249 aa6.52□□□□□ -1.37
SYNE1-213ENST00000448038 APOA2P02652 100 aa6.52□□□□□ -1.37
SYNE1-213ENST00000448038 S100A6P06703 90 aa6.52□□□□□ -1.37
SYNE1-213ENST00000448038 HOXD4P09016 255 aaPredicted RBP6.52□□□□□ -1.37
SYNE1-213ENST00000448038 PI3P19957 117 aa6.52□□□□□ -1.37
SYNE1-213ENST00000448038 OMGP23515 440 aa6.52□□□□□ -1.37
SYNE1-213ENST00000448038 GPR12P47775 334 aa6.52□□□□□ -1.37
SYNE1-213ENST00000448038 HOXA1P49639 335 aaPredicted RBP6.52□□□□□ -1.37
SYNE1-213ENST00000448038 IRF3Q14653 427 aa6.52□□□□□ -1.37
SYNE1-213ENST00000448038 MS4A18Q3C1V0 323 aa6.52□□□□□ -1.37
SYNE1-213ENST00000448038 RHOUQ7L0Q8 258 aa6.52□□□□□ -1.37
SYNE1-213ENST00000448038 C20orf196Q8IYI0 205 aa6.52□□□□□ -1.37
SYNE1-213ENST00000448038 SUMF1Q8NBK3 374 aa6.52□□□□□ -1.37
SYNE1-213ENST00000448038 OR10X1Q8NGY0 326 aa6.52□□□□□ -1.37
SYNE1-213ENST00000448038 MSI2Q96DH6 328 aaKnown RBP6.52□□□□□ -1.37
SYNE1-213ENST00000448038 SIGLEC12Q96PQ1 595 aa6.52□□□□□ -1.37
SYNE1-213ENST00000448038 SULT4A1Q9BR01 284 aa6.52□□□□□ -1.37
SYNE1-213ENST00000448038 PLEKHA3Q9HB20 300 aa6.52□□□□□ -1.37
SYNE1-213ENST00000448038 HEATR5BQ9P2D3 2071 aa6.52□□□□□ -1.37
SYNE1-213ENST00000448038 FABP7O15540 132 aa6.52□□□□□ -1.37
SYNE1-213ENST00000448038 SIX6O95475 246 aa6.52□□□□□ -1.37
SYNE1-213ENST00000448038 PTHLHP12272 177 aa6.52□□□□□ -1.37
SYNE1-213ENST00000448038 HTR2BP41595 481 aa6.52□□□□□ -1.37
SYNE1-213ENST00000448038 GGTLC2Q14390 218 aa6.52□□□□□ -1.37
SYNE1-213ENST00000448038 FAM27BQ5VT28 67 aa6.52□□□□□ -1.37
SYNE1-213ENST00000448038 Q6ZNX1 250 aa6.52□□□□□ -1.37
SYNE1-213ENST00000448038 MDP1Q86V88 176 aa6.52□□□□□ -1.37
SYNE1-213ENST00000448038 WDSUB1Q8N9V3 476 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms