RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 OR5A2Q8NGI9 324 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 FAM216AQ8WUB2 273 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 KIR3DX1Q9H7L2 352 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 NAA60Q9H7X0 242 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 DLEC1Q9Y238 1755 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 A0A0U1RQS6 177 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 KLRG2A4D1S0 409 aaPredicted RBP6.5□□□□□ -1.37
VPS53-204ENST00000437048 CBR3O75828 277 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 F2RP25116 425 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 CD1CP29017 333 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 FUT7Q11130 342 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 VWA1Q6PCB0 445 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 SSSCA1O60232 199 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 VENTXO95231 258 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 SLC10A3P09131 477 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 HRH1P35367 487 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 FAM209AQ5JX71 171 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 C6orf201Q7Z4U5 140 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 TMEM38BQ9NVV0 291 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 TECRQ9NZ01 308 aaKnown RBP6.5□□□□□ -1.37
VPS53-204ENST00000437048 CTXND1A0A1B0GTU2 59 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 SFT2D2O95562 160 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 ERVFRD-1P60508 538 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 PARM1Q6UWI2 310 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 TMEM217Q8N7C4 229 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 PRR14Q9BWN1 585 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 DOK5Q9P104 306 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 PRSS50Q9UI38 385 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 GABRQQ9UN88 632 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 CRYM-AS1A6NIL9 109 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 HSPB1P04792 205 aaKnown RBP6.5□□□□□ -1.37
VPS53-204ENST00000437048 TAS1R1Q7RTX1 841 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 C9orf62Q8N4C0 152 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 OR2C3Q8N628 320 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 CHST14Q8NCH0 376 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 STARD4Q96DR4 205 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 PTGDR2Q9Y5Y4 395 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 H0Y8G0 127 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 UQCRFS1P47985 274 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 BIDP55957 195 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 MRPL54Q6P161 138 aaKnown RBP6.5□□□□□ -1.37
VPS53-204ENST00000437048 TMEM88Q6PEY1 159 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 AAED1Q7RTV5 226 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 ZNF761Q86XN6 746 aaPredicted RBP6.5□□□□□ -1.37
VPS53-204ENST00000437048 TNFSF18Q9UNG2 199 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 HS3ST3A1Q9Y663 406 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 SCN5AQ14524 2016 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 TRAV27A0A087WT01 109 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 A0A1W2PQU0 124 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 ZNF888P0CJ79 500 aaPredicted RBP6.5□□□□□ -1.37
VPS53-204ENST00000437048 PPICP45877 212 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 SSR4P51571 173 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 SLC25A42Q86VD7 318 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 NPEPL1Q8NDH3 523 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 OR2I1PQ8NGU4 316 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 ZDHHC19Q8WVZ1 309 aaPredicted RBP6.5□□□□□ -1.37
VPS53-204ENST00000437048 GPR78Q96P69 363 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 ANXA10Q9UJ72 324 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 FANCMQ8IYD8 2048 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 RPS20P60866 119 aaKnown RBP6.5□□□□□ -1.37
VPS53-204ENST00000437048 TMEM268Q5VZI3 342 aa6.5□□□□□ -1.37
VPS53-204ENST00000437048 MEX3DQ86XN8 651 aaKnown RBP6.5□□□□□ -1.37
VPS53-204ENST00000437048 TMED7-TICAM2A0A0A6YYA0 188 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 TRDCB7Z8K6 153 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 GPANK1O95872 356 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 SAMD13Q5VXD3 122 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 LYSMD4Q5XG99 296 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 USP53Q70EK8 1073 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 OR4F17Q8NGA8 305 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 ADOQ96SZ5 270 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 B4E171 279 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 DGCR2P98153 550 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 ZNF273Q14593 569 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 CMTM4Q8IZR5 234 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 PRSS3P2Q8NHM4 247 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 PRSS37A4D1T9 235 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 LANCL1O43813 399 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 RELBQ01201 579 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 SAPCD1Q5SSQ6 148 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 C20orf196Q8IYI0 205 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 RNF175Q8N4F7 328 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 CLCF1Q9UBD9 225 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 TRBV23OR9-2A0A075B6M9 112 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 TMEM250H0YL14 139 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 KLRC4-KLRK1H3BQV0 150 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 SEMG1P04279 462 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 ZBTB25P24278 435 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 CD82P27701 267 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 MORN4Q8NDC4 146 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 OR2M3Q8NG83 312 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 LINC00615Q96LM1 132 aaPredicted RBP6.49□□□□□ -1.37
VPS53-204ENST00000437048 RBKSQ9H477 322 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 WIPI2Q9Y4P8 454 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 GAGE10A6NGK3 116 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 TBX18O95935 607 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 PSMB10P40306 273 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 XAF1Q6GPH4 301 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 TCTN3Q6NUS6 607 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 MOB3CQ70IA8 216 aa6.49□□□□□ -1.37
VPS53-204ENST00000437048 TMEM251Q8N6I4 163 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 81.2 ms