RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 ALKBH1Q13686 389 aaKnown RBP15.62■□□□□ 0.09
SHH-203ENST00000435425 CHRFAM7AQ494W8 412 aa15.62■□□□□ 0.09
SHH-203ENST00000435425 FAM120AOSQ5T036 256 aa15.62■□□□□ 0.09
SHH-203ENST00000435425 TMEM244Q5VVB8 128 aa15.62■□□□□ 0.09
SHH-203ENST00000435425 FAHD2BQ6P2I3 314 aaPredicted RBP15.62■□□□□ 0.09
SHH-203ENST00000435425 WDR82Q6UXN9 313 aa15.62■□□□□ 0.09
SHH-203ENST00000435425 SYS1Q8N2H4 156 aa15.62■□□□□ 0.09
SHH-203ENST00000435425 BPIFB6Q8NFQ5 453 aa15.62■□□□□ 0.09
SHH-203ENST00000435425 OR5A2Q8NGI9 324 aa15.62■□□□□ 0.09
SHH-203ENST00000435425 GGHQ92820 318 aa15.62■□□□□ 0.09
SHH-203ENST00000435425 FAHD2AQ96GK7 314 aa15.62■□□□□ 0.09
SHH-203ENST00000435425 TRAV20A0A0B4J274 112 aa15.61■□□□□ 0.09
SHH-203ENST00000435425 OOEPA6NGQ2 149 aa15.61■□□□□ 0.09
SHH-203ENST00000435425 E9PI62 339 aa15.61■□□□□ 0.09
SHH-203ENST00000435425 XPNPEP2O43895 674 aa15.61■□□□□ 0.09
SHH-203ENST00000435425 ATP6V1G2O95670 118 aa15.61■□□□□ 0.09
SHH-203ENST00000435425 WNT2P09544 360 aa15.61■□□□□ 0.09
SHH-203ENST00000435425 ZFP36P26651 326 aaKnown RBP15.61■□□□□ 0.09
SHH-203ENST00000435425 DCKP27707 260 aa15.61■□□□□ 0.09
SHH-203ENST00000435425 GBX2P52951 348 aaPredicted RBP15.61■□□□□ 0.09
SHH-203ENST00000435425 ESCO2Q56NI9 601 aa15.61■□□□□ 0.09
SHH-203ENST00000435425 LAIR2Q6ISS4 152 aa15.61■□□□□ 0.09
SHH-203ENST00000435425 FDX2Q6P4F2 183 aa15.61■□□□□ 0.09
SHH-203ENST00000435425 KRT74Q7RTS7 529 aa15.61■□□□□ 0.09
SHH-203ENST00000435425 ZNF676Q8N7Q3 588 aa15.61■□□□□ 0.09
SHH-203ENST00000435425 NPRL2Q8WTW4 380 aa15.61■□□□□ 0.09
SHH-203ENST00000435425 TMEM80Q96HE8 168 aa15.61■□□□□ 0.09
SHH-203ENST00000435425 VCX3BQ9H321 246 aa15.61■□□□□ 0.09
SHH-203ENST00000435425 TMEM160Q9NX00 188 aa15.61■□□□□ 0.09
SHH-203ENST00000435425 MIOXQ9UGB7 285 aa15.61■□□□□ 0.09
SHH-203ENST00000435425 TRAV38-1A0A0B4J264 116 aa15.6■□□□□ 0.09
SHH-203ENST00000435425 OR5B21A6NL26 309 aa15.6■□□□□ 0.09
SHH-203ENST00000435425 F5H0A9 414 aaPredicted RBP15.6■□□□□ 0.09
SHH-203ENST00000435425 PHF1O43189 567 aaPredicted RBP15.6■□□□□ 0.09
SHH-203ENST00000435425 FOXH1O75593 365 aa15.6■□□□□ 0.09
SHH-203ENST00000435425 LHBP01229 141 aa15.6■□□□□ 0.09
SHH-203ENST00000435425 GYPAP02724 150 aa15.6■□□□□ 0.09
SHH-203ENST00000435425 MYL12AP19105 171 aa15.6■□□□□ 0.09
SHH-203ENST00000435425 CCR9P51686 369 aa15.6■□□□□ 0.09
SHH-203ENST00000435425 OR2G6Q5TZ20 316 aa15.6■□□□□ 0.09
SHH-203ENST00000435425 TMEM42Q69YG0 159 aa15.6■□□□□ 0.09
SHH-203ENST00000435425 DCDC5Q6ZRR9 648 aa15.6■□□□□ 0.09
SHH-203ENST00000435425 Q6ZSR3 168 aa15.6■□□□□ 0.09
SHH-203ENST00000435425 OR8B3Q8NGG8 313 aa15.6■□□□□ 0.09
SHH-203ENST00000435425 TRMT10AQ8TBZ6 339 aaKnown RBP15.6■□□□□ 0.09
SHH-203ENST00000435425 SEH1LQ96EE3 360 aa15.6■□□□□ 0.09
SHH-203ENST00000435425 NEIL1Q96FI4 390 aaPredicted RBP15.6■□□□□ 0.09
SHH-203ENST00000435425 POM121Q96HA1 1249 aa15.6■□□□□ 0.09
SHH-203ENST00000435425 OR8B2Q96RD0 313 aa15.6■□□□□ 0.09
SHH-203ENST00000435425 TLNRD1Q9H1K6 362 aa15.6■□□□□ 0.09
SHH-203ENST00000435425 OR51I2Q9H344 312 aa15.6■□□□□ 0.09
SHH-203ENST00000435425 CHCHD3Q9NX63 227 aaKnown RBP15.6■□□□□ 0.09
SHH-203ENST00000435425 ERVK-18Q9QC07 812 aa15.6■□□□□ 0.09
SHH-203ENST00000435425 CLEC2DQ9UHP7 191 aa15.6■□□□□ 0.09
SHH-203ENST00000435425 CDC42EP3Q9UKI2 254 aa15.6■□□□□ 0.09
SHH-203ENST00000435425 DIMT1Q9UNQ2 313 aaKnown RBP15.6■□□□□ 0.09
SHH-203ENST00000435425 EXOSC1Q9Y3B2 195 aaKnown RBP15.6■□□□□ 0.09
SHH-203ENST00000435425 NSD1Q96L73 2696 aaPredicted RBP15.59■□□□□ 0.09
SHH-203ENST00000435425 FAM230AA0A1W2PPH8 454 aa15.59■□□□□ 0.09
SHH-203ENST00000435425 ANKRD61A6NGH8 418 aa15.59■□□□□ 0.09
SHH-203ENST00000435425 OR4C45A6NMZ5 311 aa15.59■□□□□ 0.09
SHH-203ENST00000435425 DHRS7CA6NNS2 312 aa15.59■□□□□ 0.09
SHH-203ENST00000435425 H0YJX3 145 aa15.59■□□□□ 0.09
SHH-203ENST00000435425 AKR7A2O43488 359 aa15.59■□□□□ 0.09
SHH-203ENST00000435425 RHBDL1O75783 438 aa15.59■□□□□ 0.09
SHH-203ENST00000435425 ZNF12P17014 697 aa15.59■□□□□ 0.09
SHH-203ENST00000435425 HNF1AP20823 631 aa15.59■□□□□ 0.09
SHH-203ENST00000435425 PCMT1P22061 227 aa15.59■□□□□ 0.09
SHH-203ENST00000435425 GTF2A1P52655 376 aaPredicted RBP15.59■□□□□ 0.09
SHH-203ENST00000435425 GNB2P62879 340 aa15.59■□□□□ 0.09
SHH-203ENST00000435425 ST3GAL4Q11206 333 aa15.59■□□□□ 0.09
SHH-203ENST00000435425 KCNJ8Q15842 424 aa15.59■□□□□ 0.09
SHH-203ENST00000435425 FAM76BQ5HYJ3 339 aa15.59■□□□□ 0.09
SHH-203ENST00000435425 DCAF12L2Q5VW00 463 aa15.59■□□□□ 0.09
SHH-203ENST00000435425 HAGHLQ6PII5 290 aaPredicted RBP15.59■□□□□ 0.09
SHH-203ENST00000435425 IZUMO2Q6UXV1 221 aa15.59■□□□□ 0.09
SHH-203ENST00000435425 TMPRSS11AQ6ZMR5 421 aa15.59■□□□□ 0.09
SHH-203ENST00000435425 AHSA2Q719I0 299 aa15.59■□□□□ 0.09
SHH-203ENST00000435425 NLRC3Q7RTR2 1065 aa15.59■□□□□ 0.09
SHH-203ENST00000435425 CCDC54Q8NEL0 328 aa15.59■□□□□ 0.09
SHH-203ENST00000435425 OR10AC1Q8NH08 325 aa15.59■□□□□ 0.09
SHH-203ENST00000435425 FGGYQ96C11 551 aa15.59■□□□□ 0.09
SHH-203ENST00000435425 SSBP3Q9BWW4 388 aaPredicted RBP15.59■□□□□ 0.09
SHH-203ENST00000435425 JAM3Q9BX67 310 aa15.59■□□□□ 0.09
SHH-203ENST00000435425 SNTG1Q9NSN8 517 aa15.59■□□□□ 0.09
SHH-203ENST00000435425 LPAR3Q9UBY5 353 aa15.59■□□□□ 0.09
SHH-203ENST00000435425 CAB39Q9Y376 341 aaPredicted RBP15.59■□□□□ 0.09
SHH-203ENST00000435425 SONP18583 2426 aaKnown RBP15.58■□□□□ 0.09
SHH-203ENST00000435425 DOCK11Q5JSL3 2073 aa15.58■□□□□ 0.09
SHH-203ENST00000435425 EFCAB10A6NFE3 127 aa15.58■□□□□ 0.08
SHH-203ENST00000435425 ADAM20O43506 726 aa15.58■□□□□ 0.08
SHH-203ENST00000435425 FSTL3O95633 263 aa15.58■□□□□ 0.08
SHH-203ENST00000435425 ISG15P05161 165 aa15.58■□□□□ 0.08
SHH-203ENST00000435425 ZNF20P17024 532 aa15.58■□□□□ 0.08
SHH-203ENST00000435425 PITPNBP48739 271 aa15.58■□□□□ 0.08
SHH-203ENST00000435425 MRPL28Q13084 256 aaKnown RBP15.58■□□□□ 0.08
SHH-203ENST00000435425 MED21Q13503 144 aa15.58■□□□□ 0.08
SHH-203ENST00000435425 UBE2V2Q15819 145 aa15.58■□□□□ 0.08
SHH-203ENST00000435425 FAM90A1Q86YD7 464 aa15.58■□□□□ 0.08
SHH-203ENST00000435425 STX19Q8N4C7 294 aa15.58■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms