RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 SARNPP82979 210 aaKnown RBP3.72□□□□□ -1.81
CCDC88A-206ENST00000430086 GPNMBQ14956 572 aa3.72□□□□□ -1.81
CCDC88A-206ENST00000430086 HERPUD1Q15011 391 aa3.72□□□□□ -1.81
CCDC88A-206ENST00000430086 ZSCAN26Q16670 478 aa3.72□□□□□ -1.81
CCDC88A-206ENST00000430086 TTLL9Q3SXZ7 439 aa3.72□□□□□ -1.81
CCDC88A-206ENST00000430086 CHRFAM7AQ494W8 412 aa3.72□□□□□ -1.81
CCDC88A-206ENST00000430086 GCSAMLQ5JQS6 135 aa3.72□□□□□ -1.81
CCDC88A-206ENST00000430086 IGFL2Q6UWQ7 119 aa3.72□□□□□ -1.81
CCDC88A-206ENST00000430086 FAM19A1Q7Z5A9 133 aa3.72□□□□□ -1.81
CCDC88A-206ENST00000430086 C10orf107Q8IVU9 208 aa3.72□□□□□ -1.81
CCDC88A-206ENST00000430086 LINC01555Q8NAE3 123 aa3.72□□□□□ -1.81
CCDC88A-206ENST00000430086 ACTL9Q8TC94 416 aa3.72□□□□□ -1.81
CCDC88A-206ENST00000430086 YIPF6Q96EC8 236 aa3.72□□□□□ -1.81
CCDC88A-206ENST00000430086 UBE2E2Q96LR5 201 aa3.72□□□□□ -1.81
CCDC88A-206ENST00000430086 CCDC42Q96M95 316 aa3.72□□□□□ -1.81
CCDC88A-206ENST00000430086 RASL11BQ9BPW5 248 aa3.72□□□□□ -1.81
CCDC88A-206ENST00000430086 SULT4A1Q9BR01 284 aa3.72□□□□□ -1.81
CCDC88A-206ENST00000430086 SRMSQ9H3Y6 488 aa3.72□□□□□ -1.81
CCDC88A-206ENST00000430086 ZDHHC11Q9H8X9 412 aa3.72□□□□□ -1.81
CCDC88A-206ENST00000430086 SLC25A22Q9H936 323 aa3.72□□□□□ -1.81
CCDC88A-206ENST00000430086 RHOFQ9HBH0 211 aa3.72□□□□□ -1.81
CCDC88A-206ENST00000430086 FBXO8Q9NRD0 319 aa3.72□□□□□ -1.81
CCDC88A-206ENST00000430086 FBXO6Q9NRD1 293 aaPredicted RBP3.72□□□□□ -1.81
CCDC88A-206ENST00000430086 COMMD9Q9P000 198 aa3.72□□□□□ -1.81
CCDC88A-206ENST00000430086 KIR2DL5BA0A0G2JN68 375 aa3.71□□□□□ -1.82
CCDC88A-206ENST00000430086 KIR2DL5BA0A0G2JPC4 375 aa3.71□□□□□ -1.82
CCDC88A-206ENST00000430086 XKRYO14609 159 aa3.71□□□□□ -1.82
CCDC88A-206ENST00000430086 SLC31A2O15432 143 aa3.71□□□□□ -1.82
CCDC88A-206ENST00000430086 ZNF189O75820 626 aaPredicted RBP3.71□□□□□ -1.82
CCDC88A-206ENST00000430086 IGHV3-48P01763 117 aa3.71□□□□□ -1.82
CCDC88A-206ENST00000430086 EIF4EP06730 217 aaKnown RBP3.71□□□□□ -1.82
CCDC88A-206ENST00000430086 RPS17P08708 135 aaKnown RBP3.71□□□□□ -1.82
CCDC88A-206ENST00000430086 ZNF35P13682 527 aa3.71□□□□□ -1.82
CCDC88A-206ENST00000430086 RCC1P18754 421 aaPredicted RBP3.71□□□□□ -1.82
CCDC88A-206ENST00000430086 MDKP21741 143 aaPredicted RBP3.71□□□□□ -1.82
CCDC88A-206ENST00000430086 COX7A1P24310 79 aa3.71□□□□□ -1.82
CCDC88A-206ENST00000430086 PSMB9P28065 219 aa3.71□□□□□ -1.82
CCDC88A-206ENST00000430086 RPS9P46781 194 aaKnown RBP3.71□□□□□ -1.82
CCDC88A-206ENST00000430086 GALR1P47211 349 aa3.71□□□□□ -1.82
CCDC88A-206ENST00000430086 AQP5P55064 265 aa3.71□□□□□ -1.82
CCDC88A-206ENST00000430086 RPS21P63220 83 aaKnown RBP3.71□□□□□ -1.82
CCDC88A-206ENST00000430086 ZNF763Q0D2J5 394 aa3.71□□□□□ -1.82
CCDC88A-206ENST00000430086 COA6Q5JTJ3 125 aaKnown RBP3.71□□□□□ -1.82
CCDC88A-206ENST00000430086 SPOPLQ6IQ16 392 aa3.71□□□□□ -1.82
CCDC88A-206ENST00000430086 MED27Q6P2C8 311 aa3.71□□□□□ -1.82
CCDC88A-206ENST00000430086 IL34Q6ZMJ4 242 aa3.71□□□□□ -1.82
CCDC88A-206ENST00000430086 USP50Q70EL3 339 aaPredicted RBP3.71□□□□□ -1.82
CCDC88A-206ENST00000430086 THOC6Q86W42 341 aaKnown RBP3.71□□□□□ -1.82
CCDC88A-206ENST00000430086 SLC13A5Q86YT5 568 aaPredicted RBP3.71□□□□□ -1.82
CCDC88A-206ENST00000430086 KIR2DL5AQ8N109 375 aa3.71□□□□□ -1.82
CCDC88A-206ENST00000430086 RNF175Q8N4F7 328 aa3.71□□□□□ -1.82
CCDC88A-206ENST00000430086 SPICQ8N5J4 248 aa3.71□□□□□ -1.82
CCDC88A-206ENST00000430086 NKAPP1Q8N9T2 125 aa3.71□□□□□ -1.82
CCDC88A-206ENST00000430086 UBAC2Q8NBM4 344 aa3.71□□□□□ -1.82
CCDC88A-206ENST00000430086 OR10W1Q8NGF6 305 aa3.71□□□□□ -1.82
CCDC88A-206ENST00000430086 OR8K1Q8NGG5 319 aa3.71□□□□□ -1.82
CCDC88A-206ENST00000430086 OR5D18Q8NGL1 313 aa3.71□□□□□ -1.82
CCDC88A-206ENST00000430086 OR2G3Q8NGZ4 309 aa3.71□□□□□ -1.82
CCDC88A-206ENST00000430086 KIR2DL5BQ8NHK3 375 aa3.71□□□□□ -1.82
CCDC88A-206ENST00000430086 PIGXQ8TBF5 258 aa3.71□□□□□ -1.82
CCDC88A-206ENST00000430086 NT5CQ8TCD5 201 aa3.71□□□□□ -1.82
CCDC88A-206ENST00000430086 ZMYND19Q96E35 227 aaPredicted RBP3.71□□□□□ -1.82
CCDC88A-206ENST00000430086 ZNF488Q96MN9 340 aa3.71□□□□□ -1.82
CCDC88A-206ENST00000430086 TOLLIPQ9H0E2 274 aa3.71□□□□□ -1.82
CCDC88A-206ENST00000430086 ARL6Q9H0F7 186 aa3.71□□□□□ -1.82
CCDC88A-206ENST00000430086 ARV1Q9H2C2 271 aa3.71□□□□□ -1.82
CCDC88A-206ENST00000430086 OR51B5Q9H339 312 aa3.71□□□□□ -1.82
CCDC88A-206ENST00000430086 MFSD1Q9H3U5 465 aa3.71□□□□□ -1.82
CCDC88A-206ENST00000430086 RGS18Q9NS28 235 aa3.71□□□□□ -1.82
CCDC88A-206ENST00000430086 DNAJC27Q9NZQ0 273 aa3.71□□□□□ -1.82
CCDC88A-206ENST00000430086 RAB22AQ9UL26 194 aa3.71□□□□□ -1.82
CCDC88A-206ENST00000430086 SLC22A13Q9Y226 551 aa3.71□□□□□ -1.82
CCDC88A-206ENST00000430086 SAMHD1Q9Y3Z3 626 aaKnown RBP3.71□□□□□ -1.82
CCDC88A-206ENST00000430086 MTCH2Q9Y6C9 303 aa3.71□□□□□ -1.82
CCDC88A-206ENST00000430086 TRIM49D1C9J1S8 452 aa3.7□□□□□ -1.82
CCDC88A-206ENST00000430086 H7C1H1 209 aa3.7□□□□□ -1.82
CCDC88A-206ENST00000430086 J3QLI3 93 aa3.7□□□□□ -1.82
CCDC88A-206ENST00000430086 PFDN6O15212 129 aa3.7□□□□□ -1.82
CCDC88A-206ENST00000430086 SYNGR1O43759 233 aa3.7□□□□□ -1.82
CCDC88A-206ENST00000430086 CTNSO60931 367 aa3.7□□□□□ -1.82
CCDC88A-206ENST00000430086 ZNF780AO75290 641 aaPredicted RBP3.7□□□□□ -1.82
CCDC88A-206ENST00000430086 UGT2B11O75310 529 aa3.7□□□□□ -1.82
CCDC88A-206ENST00000430086 ASS1P00966 412 aaKnown RBP3.7□□□□□ -1.82
CCDC88A-206ENST00000430086 CALB1P05937 261 aa3.7□□□□□ -1.82
CCDC88A-206ENST00000430086 THRAP10827 490 aa3.7□□□□□ -1.82
CCDC88A-206ENST00000430086 HSD11B1P28845 292 aa3.7□□□□□ -1.82
CCDC88A-206ENST00000430086 SLCO1A2P46721 670 aa3.7□□□□□ -1.82
CCDC88A-206ENST00000430086 DLX6P56179 175 aa3.7□□□□□ -1.82
CCDC88A-206ENST00000430086 OR10A3P58181 314 aa3.7□□□□□ -1.82
CCDC88A-206ENST00000430086 MTPNP58546 118 aa3.7□□□□□ -1.82
CCDC88A-206ENST00000430086 LCN12Q6JVE5 192 aa3.7□□□□□ -1.82
CCDC88A-206ENST00000430086 EPGNQ6UW88 154 aa3.7□□□□□ -1.82
CCDC88A-206ENST00000430086 TEX43Q6ZNM6 134 aa3.7□□□□□ -1.82
CCDC88A-206ENST00000430086 C10orf67Q8IYJ2 551 aa3.7□□□□□ -1.82
CCDC88A-206ENST00000430086 ENTHD1Q8IYW4 607 aa3.7□□□□□ -1.82
CCDC88A-206ENST00000430086 ZFP41Q8N8Y5 198 aa3.7□□□□□ -1.82
CCDC88A-206ENST00000430086 CCDC54Q8NEL0 328 aa3.7□□□□□ -1.82
CCDC88A-206ENST00000430086 OR10J6PQ8NGY7 276 aa3.7□□□□□ -1.82
CCDC88A-206ENST00000430086 SYNPRQ8TBG9 265 aa3.7□□□□□ -1.82
CCDC88A-206ENST00000430086 LRRC29Q8WV35 223 aa3.7□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms