RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 DOPEY1Q5JWR5 2465 aa12.95□□□□□ -0.34
USP4-203ENST00000415188 POLEQ07864 2286 aa12.95□□□□□ -0.34
USP4-203ENST00000415188 WIPF3A6NGB9 483 aa12.95□□□□□ -0.34
USP4-203ENST00000415188 RFPL4AA6NLU0 287 aa12.95□□□□□ -0.34
USP4-203ENST00000415188 RFPL4AL1F8VTS6 287 aa12.95□□□□□ -0.34
USP4-203ENST00000415188 RP2O75695 350 aa12.95□□□□□ -0.34
USP4-203ENST00000415188 B3GALNT1O75752 331 aa12.95□□□□□ -0.34
USP4-203ENST00000415188 CLDN1O95832 211 aa12.95□□□□□ -0.34
USP4-203ENST00000415188 IL2RAP01589 272 aa12.95□□□□□ -0.34
USP4-203ENST00000415188 CD8AP01732 235 aa12.95□□□□□ -0.34
USP4-203ENST00000415188 P04436 131 aa12.95□□□□□ -0.34
USP4-203ENST00000415188 HCKP08631 526 aa12.95□□□□□ -0.34
USP4-203ENST00000415188 HLA-GP17693 338 aa12.95□□□□□ -0.34
USP4-203ENST00000415188 COL8A1P27658 744 aa12.95□□□□□ -0.34
USP4-203ENST00000415188 OTX1P32242 354 aaPredicted RBP12.95□□□□□ -0.34
USP4-203ENST00000415188 AP2S1P53680 142 aaPredicted RBP12.95□□□□□ -0.34
USP4-203ENST00000415188 TAS2R31P59538 309 aa12.95□□□□□ -0.34
USP4-203ENST00000415188 RAC3P60763 192 aa12.95□□□□□ -0.34
USP4-203ENST00000415188 UBE2MP61081 183 aaKnown RBP12.95□□□□□ -0.34
USP4-203ENST00000415188 MRPS34P82930 218 aaKnown RBP12.95□□□□□ -0.34
USP4-203ENST00000415188 ARL6IP1Q15041 203 aa12.95□□□□□ -0.34
USP4-203ENST00000415188 NAA40Q86UY6 237 aa12.95□□□□□ -0.34
USP4-203ENST00000415188 OR5M8Q8NGP6 311 aa12.95□□□□□ -0.34
USP4-203ENST00000415188 FAM71F1Q96KD3 344 aaPredicted RBP12.95□□□□□ -0.34
USP4-203ENST00000415188 C1orf147Q96MC9 270 aaPredicted RBP12.95□□□□□ -0.34
USP4-203ENST00000415188 SFXN2Q96NB2 322 aa12.95□□□□□ -0.34
USP4-203ENST00000415188 GNRHR2Q96P88 292 aa12.95□□□□□ -0.34
USP4-203ENST00000415188 TMEM59Q9BXS4 323 aa12.95□□□□□ -0.34
USP4-203ENST00000415188 CHST6Q9GZX3 395 aa12.95□□□□□ -0.34
USP4-203ENST00000415188 CST11Q9H112 138 aa12.95□□□□□ -0.34
USP4-203ENST00000415188 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.95□□□□□ -0.34
USP4-203ENST00000415188 KCNN3Q9UGI6 736 aa12.95□□□□□ -0.34
USP4-203ENST00000415188 MRPS18CQ9Y3D5 142 aaKnown RBP12.95□□□□□ -0.34
USP4-203ENST00000415188 V9GYS6 101 aa12.95□□□□□ -0.34
USP4-203ENST00000415188 DHRS7CA6NNS2 312 aa12.94□□□□□ -0.34
USP4-203ENST00000415188 CDC14BO60729 498 aa12.94□□□□□ -0.34
USP4-203ENST00000415188 MTRF1O75570 445 aaKnown RBP12.94□□□□□ -0.34
USP4-203ENST00000415188 ABOP16442 354 aa12.94□□□□□ -0.34
USP4-203ENST00000415188 KLK2P20151 261 aa12.94□□□□□ -0.34
USP4-203ENST00000415188 CD34P28906 385 aa12.94□□□□□ -0.34
USP4-203ENST00000415188 DHRS2Q13268 280 aa12.94□□□□□ -0.34
USP4-203ENST00000415188 C2orf68Q2NKX9 166 aa12.94□□□□□ -0.34
USP4-203ENST00000415188 RTL6Q6ICC9 239 aa12.94□□□□□ -0.34
USP4-203ENST00000415188 LIN54Q6MZP7 749 aa12.94□□□□□ -0.34
USP4-203ENST00000415188 H3F3CQ6NXT2 135 aa12.94□□□□□ -0.34
USP4-203ENST00000415188 TMEM65Q6PI78 240 aa12.94□□□□□ -0.34
USP4-203ENST00000415188 TMUB2Q71RG4 321 aa12.94□□□□□ -0.34
USP4-203ENST00000415188 TMED4Q7Z7H5 227 aa12.94□□□□□ -0.34
USP4-203ENST00000415188 LYG2Q86SG7 212 aa12.94□□□□□ -0.34
USP4-203ENST00000415188 STEAP2Q8NFT2 490 aa12.94□□□□□ -0.34
USP4-203ENST00000415188 SPTSSAQ969W0 71 aa12.94□□□□□ -0.34
USP4-203ENST00000415188 ULBP2Q9BZM5 246 aa12.94□□□□□ -0.34
USP4-203ENST00000415188 SELENOIQ9C0D9 397 aa12.94□□□□□ -0.34
USP4-203ENST00000415188 MED9Q9NWA0 146 aa12.94□□□□□ -0.34
USP4-203ENST00000415188 ZNF319Q9P2F9 582 aa12.94□□□□□ -0.34
USP4-203ENST00000415188 MYEF2Q9P2K5 600 aaKnown RBP12.94□□□□□ -0.34
USP4-203ENST00000415188 OSGIN2Q9Y236 505 aa12.94□□□□□ -0.34
USP4-203ENST00000415188 SVILO95425 2214 aa12.93□□□□□ -0.34
USP4-203ENST00000415188 A0A0J9YW62 118 aa12.93□□□□□ -0.34
USP4-203ENST00000415188 CA11O75493 328 aa12.93□□□□□ -0.34
USP4-203ENST00000415188 DHRS3O75911 302 aa12.93□□□□□ -0.34
USP4-203ENST00000415188 WDPCPO95876 746 aa12.93□□□□□ -0.34
USP4-203ENST00000415188 IFNA6P05013 189 aa12.93□□□□□ -0.34
USP4-203ENST00000415188 HIST1H1DP16402 221 aaKnown RBP12.93□□□□□ -0.34
USP4-203ENST00000415188 ZBTB25P24278 435 aa12.93□□□□□ -0.34
USP4-203ENST00000415188 CALCRP30988 508 aa12.93□□□□□ -0.34
USP4-203ENST00000415188 TNFSF10P50591 281 aa12.93□□□□□ -0.34
USP4-203ENST00000415188 B3GALT5-AS1P59052 145 aa12.93□□□□□ -0.34
USP4-203ENST00000415188 HLXQ14774 488 aaPredicted RBP12.93□□□□□ -0.34
USP4-203ENST00000415188 SCGB2B2Q4G0G5 96 aa12.93□□□□□ -0.34
USP4-203ENST00000415188 NHLRC3Q5JS37 347 aa12.93□□□□□ -0.34
USP4-203ENST00000415188 VAX1Q5SQQ9 334 aa12.93□□□□□ -0.34
USP4-203ENST00000415188 FAM27BQ5VT28 67 aa12.93□□□□□ -0.34
USP4-203ENST00000415188 DCAF12L2Q5VW00 463 aa12.93□□□□□ -0.34
USP4-203ENST00000415188 FAM180AQ6UWF9 173 aa12.93□□□□□ -0.34
USP4-203ENST00000415188 CCDC28AQ8IWP9 274 aa12.93□□□□□ -0.34
USP4-203ENST00000415188 ARRDC1Q8N5I2 433 aa12.93□□□□□ -0.34
USP4-203ENST00000415188 NUDCD2Q8WVJ2 157 aa12.93□□□□□ -0.34
USP4-203ENST00000415188 HAS2Q92819 552 aa12.93□□□□□ -0.34
USP4-203ENST00000415188 RAB3CQ96E17 227 aa12.93□□□□□ -0.34
USP4-203ENST00000415188 JSRP1Q96MG2 331 aaPredicted RBP12.93□□□□□ -0.34
USP4-203ENST00000415188 TAAR6Q96RI8 345 aa12.93□□□□□ -0.34
USP4-203ENST00000415188 ZMAT3Q9HA38 289 aaKnown RBP12.93□□□□□ -0.34
USP4-203ENST00000415188 UNC79Q9P2D8 2635 aa12.93□□□□□ -0.34
USP4-203ENST00000415188 VSIG4Q9Y279 399 aa12.93□□□□□ -0.34
USP4-203ENST00000415188 NCOA6Q14686 2063 aaPredicted RBP12.93□□□□□ -0.34
USP4-203ENST00000415188 FXYD6-FXYD2A0A087WZ82 144 aa12.92□□□□□ -0.34
USP4-203ENST00000415188 TRAV17A0A0B4J275 112 aa12.92□□□□□ -0.34
USP4-203ENST00000415188 SIX6O95475 246 aa12.92□□□□□ -0.34
USP4-203ENST00000415188 MPIG6BO95866 241 aa12.92□□□□□ -0.34
USP4-203ENST00000415188 CFDP00746 253 aaPredicted RBP12.92□□□□□ -0.34
USP4-203ENST00000415188 RRASP10301 218 aa12.92□□□□□ -0.34
USP4-203ENST00000415188 SLC2A1P11166 492 aa12.92□□□□□ -0.34
USP4-203ENST00000415188 EDN3P14138 238 aa12.92□□□□□ -0.34
USP4-203ENST00000415188 ENPP1P22413 925 aa12.92□□□□□ -0.34
USP4-203ENST00000415188 CD96P40200 585 aa12.92□□□□□ -0.34
USP4-203ENST00000415188 OR3A4PP47883 348 aa12.92□□□□□ -0.34
USP4-203ENST00000415188 PPA1Q15181 289 aa12.92□□□□□ -0.34
USP4-203ENST00000415188 RAB35Q15286 201 aa12.92□□□□□ -0.34
USP4-203ENST00000415188 LY6G6FQ5SQ64 297 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms