RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 ABOP16442 354 aa11.67□□□□□ -0.54
COL6A3-206ENST00000409809 ARR3P36575 388 aa11.67□□□□□ -0.54
COL6A3-206ENST00000409809 OR2T6Q8NHC8 308 aa11.67□□□□□ -0.54
COL6A3-206ENST00000409809 ABHD14BQ96IU4 210 aa11.67□□□□□ -0.54
COL6A3-206ENST00000409809 OR5G3P0C626 314 aa11.66□□□□□ -0.54
COL6A3-206ENST00000409809 IRS1P35568 1242 aa11.66□□□□□ -0.54
COL6A3-206ENST00000409809 CST6Q15828 149 aa11.66□□□□□ -0.54
COL6A3-206ENST00000409809 PLPP6Q8IY26 295 aa11.66□□□□□ -0.54
COL6A3-206ENST00000409809 OR51H1Q8NH63 302 aa11.66□□□□□ -0.54
COL6A3-206ENST00000409809 ZCCHC14Q8WYQ9 949 aaKnown RBP11.66□□□□□ -0.54
COL6A3-206ENST00000409809 GALMQ96C23 342 aa11.66□□□□□ -0.54
COL6A3-206ENST00000409809 AUNIPQ9H7T9 357 aa11.66□□□□□ -0.54
COL6A3-206ENST00000409809 CXorf36Q9H7Y0 433 aa11.66□□□□□ -0.54
COL6A3-206ENST00000409809 IGLON5A6NGN9 336 aa11.66□□□□□ -0.54
COL6A3-206ENST00000409809 SIGLEC5O15389 551 aa11.66□□□□□ -0.54
COL6A3-206ENST00000409809 OR2J2O76002 312 aa11.66□□□□□ -0.54
COL6A3-206ENST00000409809 EPHA2P29317 976 aa11.66□□□□□ -0.54
COL6A3-206ENST00000409809 ZNF718Q3SXZ3 478 aa11.66□□□□□ -0.54
COL6A3-206ENST00000409809 RNF175Q8N4F7 328 aa11.66□□□□□ -0.54
COL6A3-206ENST00000409809 OR52N4Q8NGI2 321 aa11.66□□□□□ -0.54
COL6A3-206ENST00000409809 MRPL13Q9BYD1 178 aaKnown RBP11.66□□□□□ -0.54
COL6A3-206ENST00000409809 SLC25A30Q5SVS4 291 aa11.66□□□□□ -0.54
COL6A3-206ENST00000409809 ARIH2OSQ8N7S6 290 aa11.66□□□□□ -0.54
COL6A3-206ENST00000409809 CD99L2Q8TCZ2 262 aa11.66□□□□□ -0.54
COL6A3-206ENST00000409809 UBTD1Q9HAC8 227 aa11.66□□□□□ -0.54
COL6A3-206ENST00000409809 CHST11Q9NPF2 352 aa11.66□□□□□ -0.54
COL6A3-206ENST00000409809 LMX1BO60663 402 aa11.66□□□□□ -0.54
COL6A3-206ENST00000409809 DAOP14920 347 aa11.66□□□□□ -0.54
COL6A3-206ENST00000409809 CTBSQ01459 385 aa11.66□□□□□ -0.54
COL6A3-206ENST00000409809 ZNF789Q5FWF6 425 aa11.66□□□□□ -0.54
COL6A3-206ENST00000409809 ZNF600Q6ZNG1 722 aa11.66□□□□□ -0.54
COL6A3-206ENST00000409809 IL17FQ96PD4 163 aa11.66□□□□□ -0.54
COL6A3-206ENST00000409809 GLIPR2Q9H4G4 154 aa11.66□□□□□ -0.54
COL6A3-206ENST00000409809 PPT2Q9UMR5 302 aa11.66□□□□□ -0.54
COL6A3-206ENST00000409809 CDC34P49427 236 aaPredicted RBP11.66□□□□□ -0.54
COL6A3-206ENST00000409809 MMP16P51512 607 aa11.66□□□□□ -0.54
COL6A3-206ENST00000409809 JOSD1Q15040 202 aaPredicted RBP11.66□□□□□ -0.54
COL6A3-206ENST00000409809 MRPL52Q86TS9 123 aaKnown RBP11.66□□□□□ -0.54
COL6A3-206ENST00000409809 CALHM3Q86XJ0 350 aa11.66□□□□□ -0.54
COL6A3-206ENST00000409809 SSX1Q16384 188 aa11.66□□□□□ -0.54
COL6A3-206ENST00000409809 NAA60Q9H7X0 242 aa11.66□□□□□ -0.54
COL6A3-206ENST00000409809 A0A1B0GV90 55 aa11.66□□□□□ -0.54
COL6A3-206ENST00000409809 SLC10A3P09131 477 aa11.66□□□□□ -0.54
COL6A3-206ENST00000409809 SRSF9Q13242 221 aaKnown RBP eCLIP11.66□□□□□ -0.54
COL6A3-206ENST00000409809 ADAT3Q96EY9 351 aaPredicted RBP11.66□□□□□ -0.54
COL6A3-206ENST00000409809 WIPI2Q9Y4P8 454 aa11.66□□□□□ -0.54
COL6A3-206ENST00000409809 C11orf94C9JXX5 98 aa11.65□□□□□ -0.54
COL6A3-206ENST00000409809 NUDT3O95989 172 aa11.65□□□□□ -0.54
COL6A3-206ENST00000409809 HINT3Q9NQE9 182 aaKnown RBP11.65□□□□□ -0.54
COL6A3-206ENST00000409809 MFSD2BA6NFX1 497 aa11.65□□□□□ -0.54
COL6A3-206ENST00000409809 TIMM8AO60220 97 aaPredicted RBP11.65□□□□□ -0.54
COL6A3-206ENST00000409809 ZNF253O75346 499 aa11.65□□□□□ -0.54
COL6A3-206ENST00000409809 CYB5R3P00387 301 aaPredicted RBP11.65□□□□□ -0.54
COL6A3-206ENST00000409809 CCL23P55773 120 aa11.65□□□□□ -0.54
COL6A3-206ENST00000409809 SERF2P84101 59 aa11.65□□□□□ -0.54
COL6A3-206ENST00000409809 GPX7Q96SL4 187 aaPredicted RBP11.65□□□□□ -0.54
COL6A3-206ENST00000409809 FITM1A5D6W6 292 aa11.65□□□□□ -0.54
COL6A3-206ENST00000409809 CNIH1O95406 144 aa11.65□□□□□ -0.54
COL6A3-206ENST00000409809 DEGS2Q6QHC5 323 aa11.65□□□□□ -0.54
COL6A3-206ENST00000409809 ADAMTS17Q8TE56 1095 aa11.65□□□□□ -0.54
COL6A3-206ENST00000409809 CPEB2Q7Z5Q1 589 aaKnown RBP11.65□□□□□ -0.54
COL6A3-206ENST00000409809 CBLN2Q8IUK8 224 aa11.65□□□□□ -0.54
COL6A3-206ENST00000409809 C19orf47Q8N9M1 422 aaKnown RBP11.65□□□□□ -0.54
COL6A3-206ENST00000409809 OR10G3Q8NGC4 313 aa11.65□□□□□ -0.54
COL6A3-206ENST00000409809 P2RX4Q99571 388 aa11.65□□□□□ -0.54
COL6A3-206ENST00000409809 TXNIPQ9H3M7 391 aa11.65□□□□□ -0.54
COL6A3-206ENST00000409809 RNF167Q9H6Y7 350 aa11.65□□□□□ -0.54
COL6A3-206ENST00000409809 PCMT1P22061 227 aa11.65□□□□□ -0.54
COL6A3-206ENST00000409809 SLC19A1P41440 591 aa11.65□□□□□ -0.54
COL6A3-206ENST00000409809 SLC38A11Q08AI6 406 aa11.65□□□□□ -0.54
COL6A3-206ENST00000409809 OR8B8Q15620 311 aa11.65□□□□□ -0.54
COL6A3-206ENST00000409809 DUSP23Q9BVJ7 150 aa11.65□□□□□ -0.54
COL6A3-206ENST00000409809 PECRQ9BY49 303 aa11.65□□□□□ -0.54
COL6A3-206ENST00000409809 OR5AS1Q8N127 324 aa11.65□□□□□ -0.54
COL6A3-206ENST00000409809 C10orf35Q96D05 121 aa11.65□□□□□ -0.54
COL6A3-206ENST00000409809 TMEM56Q96MV1 263 aa11.65□□□□□ -0.54
COL6A3-206ENST00000409809 GPA33Q99795 319 aa11.65□□□□□ -0.54
COL6A3-206ENST00000409809 CHRNA10Q9GZZ6 450 aa11.65□□□□□ -0.54
COL6A3-206ENST00000409809 TMED7-TICAM2A0A0A6YYA0 188 aa11.65□□□□□ -0.55
COL6A3-206ENST00000409809 H3BMH7 237 aa11.65□□□□□ -0.55
COL6A3-206ENST00000409809 KLK8O60259 260 aa11.65□□□□□ -0.55
COL6A3-206ENST00000409809 UTS2O95399 124 aa11.65□□□□□ -0.55
COL6A3-206ENST00000409809 CA2P00918 260 aa11.65□□□□□ -0.55
COL6A3-206ENST00000409809 TBX15Q96SF7 602 aa11.65□□□□□ -0.55
COL6A3-206ENST00000409809 C7orf66A4D0T2 115 aa11.64□□□□□ -0.55
COL6A3-206ENST00000409809 H3BQ15 152 aa11.64□□□□□ -0.55
COL6A3-206ENST00000409809 HMGN4O00479 90 aa11.64□□□□□ -0.55
COL6A3-206ENST00000409809 MMP9P14780 707 aa11.64□□□□□ -0.55
COL6A3-206ENST00000409809 FUT6P51993 359 aa11.64□□□□□ -0.55
COL6A3-206ENST00000409809 CD226Q15762 336 aa11.64□□□□□ -0.55
COL6A3-206ENST00000409809 OR2W5A6NFC9 320 aa11.64□□□□□ -0.55
COL6A3-206ENST00000409809 TBXA2RP21731 343 aa11.64□□□□□ -0.55
COL6A3-206ENST00000409809 NCMAPQ5T1S8 102 aa11.64□□□□□ -0.55
COL6A3-206ENST00000409809 C12orf73Q69YU5 71 aa11.64□□□□□ -0.55
COL6A3-206ENST00000409809 FAM169BQ8N8A8 192 aa11.64□□□□□ -0.55
COL6A3-206ENST00000409809 RPS4Y2Q8TD47 263 aa11.64□□□□□ -0.55
COL6A3-206ENST00000409809 HAPLN2Q9GZV7 340 aa11.64□□□□□ -0.55
COL6A3-206ENST00000409809 ZNF646O15015 1829 aaPredicted RBP11.64□□□□□ -0.55
COL6A3-206ENST00000409809 ANKRD20A5PA0PJZ0 165 aa11.64□□□□□ -0.55
COL6A3-206ENST00000409809 AQP7P3A6NL99 342 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms