RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 APEX1P27695 318 aaKnown RBP6.53□□□□□ -1.36
SCN9A-202ENST00000409435 APOFQ13790 326 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 TMEM244Q5VVB8 128 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 NCR3LG1Q68D85 454 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 CYB5R2Q6BCY4 276 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP6.53□□□□□ -1.36
SCN9A-202ENST00000409435 V9GY05 133 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 A0A087WV62 115 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 A0A1W2PPQ1 181 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 PLPP1O14494 284 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 NME2P1O60361 137 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 CD99P14209 185 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 B4GALT1P15291 398 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 SDC1P18827 310 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 CSF2RBP32927 897 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 P2RY6Q15077 328 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 GAB4Q2WGN9 574 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 STUMQ69YW2 141 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 MOB3BQ86TA1 216 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 TMEM251Q8N6I4 163 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 RBMXL3Q8N7X1 1067 aaKnown RBP6.53□□□□□ -1.36
SCN9A-202ENST00000409435 OR5D14Q8NGL3 314 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 PCGF1Q9BSM1 259 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 DCTN5Q9BTE1 182 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 ALG8Q9BVK2 526 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 CNOT2Q9NZN8 540 aaKnown RBP6.53□□□□□ -1.36
SCN9A-202ENST00000409435 CDC42EP3Q9UKI2 254 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 ZNF638Q14966 1978 aaKnown RBP6.53□□□□□ -1.36
SCN9A-202ENST00000409435 KIAA1551Q9HCM1 1747 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 A0A1W2PR48 441 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 FAM24AA6NFZ4 105 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 KDELR2P33947 212 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 ATP6V1FQ16864 119 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 TIGITQ495A1 244 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 FAM169BQ8N8A8 192 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 OR2AE1Q8NHA4 323 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 SNRNP40Q96DI7 357 aaKnown RBP6.53□□□□□ -1.36
SCN9A-202ENST00000409435 SEC22AQ96IW7 307 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 FOXB1Q99853 325 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 ATF6BQ99941 703 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 CITED1Q99966 193 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 SGPP1Q9BX95 441 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 ZDHHC18Q9NUE0 388 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 SLAMF8Q9P0V8 285 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 RHBDD3Q9Y3P4 386 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 TRAPPC1Q9Y5R8 145 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 A0A0B4J203 849 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 XKRY2A2RUG3 117 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 M0R082 166 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 GPR31O00270 319 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 ADAM20O43506 726 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 PRKNO60260 465 aaPredicted RBP6.53□□□□□ -1.36
SCN9A-202ENST00000409435 OSMP13725 252 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 PMS2P11Q13670 270 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 EXOSC2Q13868 293 aaKnown RBP6.53□□□□□ -1.36
SCN9A-202ENST00000409435 CYS1Q717R9 158 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 LYSMD2Q8IV50 215 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 OR51F2Q8NH61 342 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 ASB17Q8WXJ9 295 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 RPEQ96AT9 228 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 METTL9Q9H1A3 318 aa6.53□□□□□ -1.36
SCN9A-202ENST00000409435 SIRT3Q9NTG7 399 aaPredicted RBP6.53□□□□□ -1.36
SCN9A-202ENST00000409435 KCNE1BA0A087WTH5 132 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 IGHV3-64DA0A0J9YX35 117 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 TMEM269A0A1B0GVZ9 245 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 MEIS3P1A6NDR6 274 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 BET1O15155 118 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 NCR1O76036 304 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 AQP8O94778 261 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 ANXA7P20073 488 aaKnown RBP6.52□□□□□ -1.37
SCN9A-202ENST00000409435 HOXC5Q00444 222 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 PRTGQ2VWP7 1150 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 SMIM21Q3B7S5 101 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 SPATA46Q5T0L3 261 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 ZDHHC24Q6UX98 284 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 ZNF66Q6ZN08 573 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 SDR9C7Q8NEX9 313 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 DYNLRB2Q8TF09 96 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 GNPNAT1Q96EK6 184 aaPredicted RBP6.52□□□□□ -1.37
SCN9A-202ENST00000409435 SAMD8Q96LT4 415 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 C20orf85Q9H1P6 137 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 EHFQ9NZC4 300 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 PITPNC1Q9UKF7 332 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 RNF150Q9ULK6 438 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 NKX2-6A6NCS4 301 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 DEGS1O15121 323 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 CTSVO60911 334 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 GOSR1O95249 250 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 CT45A10P0DMU9 189 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 TGFBR1P36897 503 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 GDNFP39905 211 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 PGGT1BP53609 377 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 MLLT11Q13015 90 aaPredicted RBP6.52□□□□□ -1.37
SCN9A-202ENST00000409435 CRMP1Q14194 572 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 PLBD1Q6P4A8 553 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 SLC35F2Q8IXU6 374 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 SHISA5Q8N114 240 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 ALKBH3Q96Q83 286 aaPredicted RBP6.52□□□□□ -1.37
SCN9A-202ENST00000409435 GINS3Q9BRX5 216 aa6.52□□□□□ -1.37
SCN9A-202ENST00000409435 PTDSS2Q9BVG9 487 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms