RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 FADS6Q8N9I5 356 aa8.52□□□□□ -1.05
COL6A3-204ENST00000392003 OR10S1Q8NGN2 331 aa8.52□□□□□ -1.05
COL6A3-204ENST00000392003 GPR84Q9NQS5 396 aa8.52□□□□□ -1.05
COL6A3-204ENST00000392003 SIRT7Q9NRC8 400 aa8.52□□□□□ -1.05
COL6A3-204ENST00000392003 MRPS28Q9Y2Q9 187 aaKnown RBP8.52□□□□□ -1.05
COL6A3-204ENST00000392003 EXPH5Q8NEV8 1989 aa8.51□□□□□ -1.05
COL6A3-204ENST00000392003 CHRM2P08172 466 aa8.51□□□□□ -1.05
COL6A3-204ENST00000392003 FGF2P09038 288 aa8.51□□□□□ -1.05
COL6A3-204ENST00000392003 PPP3CBP16298 524 aa8.51□□□□□ -1.05
COL6A3-204ENST00000392003 HABP2Q14520 560 aaPredicted RBP8.51□□□□□ -1.05
COL6A3-204ENST00000392003 ZNF260Q3ZCT1 412 aa8.51□□□□□ -1.05
COL6A3-204ENST00000392003 PLEKHN1Q494U1 663 aaPredicted RBP8.51□□□□□ -1.05
COL6A3-204ENST00000392003 TMEM164Q5U3C3 297 aa8.51□□□□□ -1.05
COL6A3-204ENST00000392003 TMUB2Q71RG4 321 aa8.51□□□□□ -1.05
COL6A3-204ENST00000392003 DOK3Q7L591 496 aa8.51□□□□□ -1.05
COL6A3-204ENST00000392003 NAA40Q86UY6 237 aa8.51□□□□□ -1.05
COL6A3-204ENST00000392003 LDLRAD3Q86YD5 345 aa8.51□□□□□ -1.05
COL6A3-204ENST00000392003 BEST3Q8N1M1 668 aa8.51□□□□□ -1.05
COL6A3-204ENST00000392003 GTPBP8Q8N3Z3 284 aaPredicted RBP8.51□□□□□ -1.05
COL6A3-204ENST00000392003 BOLLQ8N9W6 283 aaKnown RBP8.51□□□□□ -1.05
COL6A3-204ENST00000392003 PNLDC1Q8NA58 520 aaKnown RBP8.51□□□□□ -1.05
COL6A3-204ENST00000392003 STEAP2Q8NFT2 490 aa8.51□□□□□ -1.05
COL6A3-204ENST00000392003 S100PBPQ96BU1 408 aa8.51□□□□□ -1.05
COL6A3-204ENST00000392003 FAM122AQ96E09 287 aa8.51□□□□□ -1.05
COL6A3-204ENST00000392003 SELENOIQ9C0D9 397 aa8.51□□□□□ -1.05
COL6A3-204ENST00000392003 KLK13Q9UKR3 277 aa8.51□□□□□ -1.05
COL6A3-204ENST00000392003 RPH3ALQ9UNE2 315 aa8.51□□□□□ -1.05
COL6A3-204ENST00000392003 CHCHD2Q9Y6H1 151 aaPredicted RBP8.51□□□□□ -1.05
COL6A3-204ENST00000392003 R4GN57 208 aa8.51□□□□□ -1.05
COL6A3-204ENST00000392003 LOC100509620A0A075B734 347 aa8.51□□□□□ -1.05
COL6A3-204ENST00000392003 A8MXE2 369 aa8.51□□□□□ -1.05
COL6A3-204ENST00000392003 G3V3Y1 287 aa8.51□□□□□ -1.05
COL6A3-204ENST00000392003 RAB27BO00194 218 aa8.51□□□□□ -1.05
COL6A3-204ENST00000392003 RER1O15258 196 aa8.51□□□□□ -1.05
COL6A3-204ENST00000392003 MPIG6BO95866 241 aa8.51□□□□□ -1.05
COL6A3-204ENST00000392003 F12P00748 615 aaPredicted RBP8.51□□□□□ -1.05
COL6A3-204ENST00000392003 CD74P04233 296 aa8.51□□□□□ -1.05
COL6A3-204ENST00000392003 VSIG8P0DPA2 414 aa8.51□□□□□ -1.05
COL6A3-204ENST00000392003 TCN2P20062 427 aa8.51□□□□□ -1.05
COL6A3-204ENST00000392003 AGTR1P30556 359 aa8.51□□□□□ -1.05
COL6A3-204ENST00000392003 GSK3AP49840 483 aa8.51□□□□□ -1.05
COL6A3-204ENST00000392003 RBP2P50120 134 aa8.51□□□□□ -1.05
COL6A3-204ENST00000392003 H2BFSP57053 126 aa8.51□□□□□ -1.05
COL6A3-204ENST00000392003 CSNK2A1P68400 391 aaPredicted RBP8.51□□□□□ -1.05
COL6A3-204ENST00000392003 MFAP5Q13361 173 aa8.51□□□□□ -1.05
COL6A3-204ENST00000392003 OR4S1Q8NGB4 309 aa8.51□□□□□ -1.05
COL6A3-204ENST00000392003 KCNG3Q8TAE7 436 aa8.51□□□□□ -1.05
COL6A3-204ENST00000392003 AQP3Q92482 292 aa8.51□□□□□ -1.05
COL6A3-204ENST00000392003 ZNF160Q9HCG1 818 aa8.51□□□□□ -1.05
COL6A3-204ENST00000392003 LOXL2Q9Y4K0 774 aa8.51□□□□□ -1.05
COL6A3-204ENST00000392003 B3GALT1Q9Y5Z6 326 aa8.51□□□□□ -1.05
COL6A3-204ENST00000392003 LOC102723996A0A087X1L8 192 aa8.5□□□□□ -1.05
COL6A3-204ENST00000392003 VAMP5O95183 116 aa8.5□□□□□ -1.05
COL6A3-204ENST00000392003 SP9P0CG40 484 aa8.5□□□□□ -1.05
COL6A3-204ENST00000392003 SLC6A9P48067 706 aa8.5□□□□□ -1.05
COL6A3-204ENST00000392003 SORDQ00796 357 aa8.5□□□□□ -1.05
COL6A3-204ENST00000392003 MC2RQ01718 297 aa8.5□□□□□ -1.05
COL6A3-204ENST00000392003 GLIPR1L1Q6UWM5 242 aa8.5□□□□□ -1.05
COL6A3-204ENST00000392003 OR8B12Q8NGG6 310 aa8.5□□□□□ -1.05
COL6A3-204ENST00000392003 OR10R2Q8NGX6 335 aa8.5□□□□□ -1.05
COL6A3-204ENST00000392003 NUDCD2Q8WVJ2 157 aa8.5□□□□□ -1.05
COL6A3-204ENST00000392003 CMBLQ96DG6 245 aa8.5□□□□□ -1.05
COL6A3-204ENST00000392003 SLC6A7Q99884 636 aa8.5□□□□□ -1.05
COL6A3-204ENST00000392003 PIGQQ9BRB3 760 aa8.5□□□□□ -1.05
COL6A3-204ENST00000392003 URM1Q9BTM9 101 aaKnown RBP8.5□□□□□ -1.05
COL6A3-204ENST00000392003 RSRP1Q9BUV0 290 aa8.5□□□□□ -1.05
COL6A3-204ENST00000392003 MFFQ9GZY8 342 aa8.5□□□□□ -1.05
COL6A3-204ENST00000392003 MYOZ1Q9NP98 299 aaPredicted RBP8.5□□□□□ -1.05
COL6A3-204ENST00000392003 IGHV1-45A0A0A0MS14 117 aa8.5□□□□□ -1.05
COL6A3-204ENST00000392003 LOC102725191A0A1B0GVB3 256 aa8.5□□□□□ -1.05
COL6A3-204ENST00000392003 C5orf52A6NGY3 159 aa8.5□□□□□ -1.05
COL6A3-204ENST00000392003 RFPL4AA6NLU0 287 aa8.5□□□□□ -1.05
COL6A3-204ENST00000392003 NUDT19A8MXV4 375 aa8.5□□□□□ -1.05
COL6A3-204ENST00000392003 RFPL4AL1F8VTS6 287 aa8.5□□□□□ -1.05
COL6A3-204ENST00000392003 STK17BO94768 372 aa8.5□□□□□ -1.05
COL6A3-204ENST00000392003 HLA-AP01891 365 aaKnown RBP8.5□□□□□ -1.05
COL6A3-204ENST00000392003 ABOP16442 354 aa8.5□□□□□ -1.05
COL6A3-204ENST00000392003 HNF1AP20823 631 aa8.5□□□□□ -1.05
COL6A3-204ENST00000392003 MSR1P21757 451 aa8.5□□□□□ -1.05
COL6A3-204ENST00000392003 ITGA3P26006 1051 aa8.5□□□□□ -1.05
COL6A3-204ENST00000392003 DSCR4P56555 118 aaPredicted RBP8.5□□□□□ -1.05
COL6A3-204ENST00000392003 CSRP2Q16527 193 aa8.5□□□□□ -1.05
COL6A3-204ENST00000392003 KCNMB1Q16558 191 aa8.5□□□□□ -1.05
COL6A3-204ENST00000392003 SFRP5Q5T4F7 317 aa8.5□□□□□ -1.05
COL6A3-204ENST00000392003 ATPAF1Q5TC12 328 aaPredicted RBP8.5□□□□□ -1.05
COL6A3-204ENST00000392003 OR2W3Q7Z3T1 314 aa8.5□□□□□ -1.05
COL6A3-204ENST00000392003 RPS19BP1Q86WX3 136 aaKnown RBP8.5□□□□□ -1.05
COL6A3-204ENST00000392003 M1APQ8TC57 530 aa8.5□□□□□ -1.05
COL6A3-204ENST00000392003 SPACA5Q96QH8 159 aa8.5□□□□□ -1.05
COL6A3-204ENST00000392003 S100A13Q99584 98 aa8.5□□□□□ -1.05
COL6A3-204ENST00000392003 C2orf88Q9BSF0 95 aa8.5□□□□□ -1.05
COL6A3-204ENST00000392003 ZNF700Q9H0M5 742 aa8.5□□□□□ -1.05
COL6A3-204ENST00000392003 A0A1B0GTI1 187 aa8.5□□□□□ -1.05
COL6A3-204ENST00000392003 ZNF814B7Z6K7 855 aa8.5□□□□□ -1.05
COL6A3-204ENST00000392003 CELA2AP08217 269 aa8.5□□□□□ -1.05
COL6A3-204ENST00000392003 TBPP20226 339 aa8.5□□□□□ -1.05
COL6A3-204ENST00000392003 ZNF84P51523 738 aa8.5□□□□□ -1.05
COL6A3-204ENST00000392003 LSM6P62312 80 aaKnown RBP8.5□□□□□ -1.05
COL6A3-204ENST00000392003 TNFRSF9Q07011 255 aa8.5□□□□□ -1.05
COL6A3-204ENST00000392003 HLXQ14774 488 aaPredicted RBP8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms