RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 ZNF815PA8K554 130 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 A8MWP6 167 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 D6RAR5 112 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 F8VP50 259 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 G3V3Q6 166 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 K7EP13 123 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 PEX7O00628 323 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 SLC9A3R1O14745 358 aaPredicted RBP-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 SLC25A20O43772 301 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 MPDU1O75352 247 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 GRAP2O75791 330 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 CABYRO75952 493 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 HMGA1P17096 107 aaKnown RBP-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 NCF2P19878 526 aaPredicted RBP-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 NNMTP40261 264 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 CCT3P49368 545 aaKnown RBP-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 CAMPP49913 170 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 LIM2P55344 173 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 GEMIN4P57678 1058 aaKnown RBP-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 RAP1AP62834 184 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 FKBP1AP62942 108 aaKnown RBP-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 UBXN2AP68543 259 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 SLC35B1P78383 322 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 SLC25A11Q02978 314 aaKnown RBP-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 SKP2Q13309 424 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 EXOSC2Q13868 293 aaKnown RBP-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 NRF1Q16656 503 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 LGSNQ5TDP6 509 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 PRAMEF20Q5VT98 475 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 IL31Q6EBC2 164 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 OR10K2Q6IF99 312 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 RASL11AQ6T310 242 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 AMTNQ6UX39 209 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 BTNL8Q6UX41 500 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 TMEM14EPQ6UXP3 125 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 SLC25A48Q6ZT89 311 aaKnown RBP-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 ASPGQ86U10 573 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 ANKRD18AQ8IVF6 992 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 PDZD9Q8IXQ8 264 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 CPNE9Q8IYJ1 553 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 ZNF444Q8N0Y2 327 aaPredicted RBP-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 TEX29Q8N6K0 151 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 RNF148Q8N7C7 305 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 SREK1IP1Q8N9Q2 155 aaPredicted RBP-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 OR9I1Q8NGQ6 314 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 OR13C5Q8NGS8 318 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 OR2A12Q8NGT7 310 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 CIRBP-AS1Q8TBR5 109 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 ZNF431Q8TF32 576 aaPredicted RBP-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 IL1F10Q8WWZ1 152 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 ASB17Q8WXJ9 295 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 LPGAT1Q92604 370 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 RAD54LQ92698 747 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 DIRC1Q969H9 104 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 SLC35C1Q96A29 364 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 GALMQ96C23 342 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 EVI5LQ96CN4 794 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 LTV1Q96GA3 475 aaPredicted RBP-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 C7orf26Q96N11 449 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 SEPHS2Q99611 448 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 OMDQ99983 421 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 ZNF559Q9BR84 538 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 NUDT16L1Q9BRJ7 211 aaKnown RBP-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 FICDQ9BVA6 458 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 RAB34Q9BZG1 259 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 CRNKL1Q9BZJ0 848 aaKnown RBP-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 KLHL4Q9C0H6 718 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 ACTR3CQ9C0K3 210 aaPredicted RBP-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 IL22Q9GZX6 179 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 RPAP3Q9H6T3 665 aaPredicted RBP-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 CWH43Q9H720 699 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 HES4Q9HCC6 221 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 C20orf96Q9NUD7 363 aaPredicted RBP-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 AIG1Q9NVV5 245 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 RBM28Q9NW13 759 aaKnown RBP-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 TAAR3PQ9P1P4 343 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 ADD3Q9UEY8 706 aaKnown RBP-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 DCDC2Q9UHG0 476 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 FUT9Q9Y231 359 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 RPL36Q9Y3U8 105 aaKnown RBP-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 PTPRJQ12913 1337 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 SHANK2Q9UPX8 1470 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 MAGI3Q5TCQ9 1506 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 LRRC7Q96NW7 1537 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 ZNF608Q9ULD9 1512 aaPredicted RBP-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 DNMBPQ6XZF7 1577 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 TMEM131LA2VDJ0 1609 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 KIF1BO60333 1816 aa-1.78□□□□□ -2.69
RNU6-540P-201ENST00000384622 KIAA1549LQ6ZVL6 1849 aa-1.79□□□□□ -2.7
RNU6-540P-201ENST00000384622 CHD1O14646 1710 aa-1.79□□□□□ -2.7
RNU6-540P-201ENST00000384622 RIMBP3CA6NJZ7 1639 aa-1.79□□□□□ -2.7
RNU6-540P-201ENST00000384622 RIMBP3BA6NNM3 1639 aa-1.79□□□□□ -2.7
RNU6-540P-201ENST00000384622 RIMBP3Q9UFD9 1639 aa-1.79□□□□□ -2.7
RNU6-540P-201ENST00000384622 BAZ1AQ9NRL2 1556 aaPredicted RBP-1.79□□□□□ -2.7
RNU6-540P-201ENST00000384622 YTHDC2Q9H6S0 1430 aaKnown RBP-1.79□□□□□ -2.7
RNU6-540P-201ENST00000384622 NFASCO94856 1347 aa-1.79□□□□□ -2.7
RNU6-540P-201ENST00000384622 UBE2L5PA0A1B0GUS4 154 aa-1.79□□□□□ -2.7
RNU6-540P-201ENST00000384622 ANKRD18BA2A2Z9 1011 aa-1.79□□□□□ -2.7
RNU6-540P-201ENST00000384622 CCDC162PA2VCL2 907 aa-1.79□□□□□ -2.7
RNU6-540P-201ENST00000384622 NCF1BA6NI72 391 aaPredicted RBP-1.79□□□□□ -2.7
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms