RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 ROM1Q03395 351 aa10.86□□□□□ -0.67
CIITA-202ENST00000381835 KLRB1Q12918 225 aa10.86□□□□□ -0.67
CIITA-202ENST00000381835 ENDOGQ14249 297 aaKnown RBP10.86□□□□□ -0.67
CIITA-202ENST00000381835 ZNF660Q6AZW8 331 aaPredicted RBP10.86□□□□□ -0.67
CIITA-202ENST00000381835 ANKRD16Q6P6B7 361 aa10.86□□□□□ -0.67
CIITA-202ENST00000381835 GFRALQ6UXV0 394 aa10.86□□□□□ -0.67
CIITA-202ENST00000381835 FAM214BQ7L5A3 538 aa10.86□□□□□ -0.67
CIITA-202ENST00000381835 HIST2H2ABQ8IUE6 130 aaPredicted RBP10.86□□□□□ -0.67
CIITA-202ENST00000381835 OR51D1Q8NGF3 324 aa10.86□□□□□ -0.67
CIITA-202ENST00000381835 DMRTA2Q96SC8 542 aa10.86□□□□□ -0.67
CIITA-202ENST00000381835 MFFQ9GZY8 342 aa10.86□□□□□ -0.67
CIITA-202ENST00000381835 GTF2A1LQ9UNN4 478 aa10.86□□□□□ -0.67
CIITA-202ENST00000381835 EMC9Q9Y3B6 208 aa10.86□□□□□ -0.67
CIITA-202ENST00000381835 TRAV18A0A075B6X5 111 aa10.85□□□□□ -0.67
CIITA-202ENST00000381835 TTLL8A6PVC2 850 aa10.85□□□□□ -0.67
CIITA-202ENST00000381835 WDR1O75083 606 aa10.85□□□□□ -0.67
CIITA-202ENST00000381835 CTAG2O75638 210 aa10.85□□□□□ -0.67
CIITA-202ENST00000381835 H2BFMP0C1H6 154 aa10.85□□□□□ -0.67
CIITA-202ENST00000381835 EFNB2P52799 333 aa10.85□□□□□ -0.67
CIITA-202ENST00000381835 LY6DQ14210 128 aa10.85□□□□□ -0.67
CIITA-202ENST00000381835 ZMYND11Q15326 602 aa10.85□□□□□ -0.67
CIITA-202ENST00000381835 FAM27BQ5VT28 67 aa10.85□□□□□ -0.67
CIITA-202ENST00000381835 RTL6Q6ICC9 239 aa10.85□□□□□ -0.67
CIITA-202ENST00000381835 ZNF813Q6ZN06 617 aa10.85□□□□□ -0.67
CIITA-202ENST00000381835 RPRMLQ8N4K4 120 aa10.85□□□□□ -0.67
CIITA-202ENST00000381835 OR51A4Q8NGJ6 313 aa10.85□□□□□ -0.67
CIITA-202ENST00000381835 OR10S1Q8NGN2 331 aa10.85□□□□□ -0.67
CIITA-202ENST00000381835 OR10AC1Q8NH08 325 aa10.85□□□□□ -0.67
CIITA-202ENST00000381835 OR8S1Q8NH09 359 aa10.85□□□□□ -0.67
CIITA-202ENST00000381835 FAM57AQ8TBR7 257 aa10.85□□□□□ -0.67
CIITA-202ENST00000381835 GPR148Q8TDV2 347 aa10.85□□□□□ -0.67
CIITA-202ENST00000381835 RNF133Q8WVZ7 376 aa10.85□□□□□ -0.67
CIITA-202ENST00000381835 GPR160Q9UJ42 338 aa10.85□□□□□ -0.67
CIITA-202ENST00000381835 COL6A6A6NMZ7 2263 aa10.85□□□□□ -0.67
CIITA-202ENST00000381835 PCNX1Q96RV3 2341 aa10.85□□□□□ -0.67
CIITA-202ENST00000381835 NBASA2RRP1 2371 aa10.85□□□□□ -0.67
CIITA-202ENST00000381835 ARPC4-TTLL3A0A0A6YYG9 625 aa10.85□□□□□ -0.67
CIITA-202ENST00000381835 OR4C45A6NMZ5 311 aa10.85□□□□□ -0.67
CIITA-202ENST00000381835 ZNF254O75437 659 aa10.85□□□□□ -0.67
CIITA-202ENST00000381835 PATE4P0C8F1 98 aa10.85□□□□□ -0.67
CIITA-202ENST00000381835 ARF1P84077 181 aaKnown RBP10.85□□□□□ -0.67
CIITA-202ENST00000381835 FOXF2Q12947 444 aa10.85□□□□□ -0.67
CIITA-202ENST00000381835 MPPED2Q15777 294 aa10.85□□□□□ -0.67
CIITA-202ENST00000381835 OR2A2Q6IF42 318 aa10.85□□□□□ -0.67
CIITA-202ENST00000381835 KLHL24Q6TFL4 600 aa10.85□□□□□ -0.67
CIITA-202ENST00000381835 SEM1Q6ZVN7 128 aa10.85□□□□□ -0.67
CIITA-202ENST00000381835 SLC22A24Q8N4F4 322 aa10.85□□□□□ -0.67
CIITA-202ENST00000381835 OR52H1Q8NGJ2 320 aa10.85□□□□□ -0.67
CIITA-202ENST00000381835 OR2G2Q8NGZ5 317 aa10.85□□□□□ -0.67
CIITA-202ENST00000381835 FBXO17Q96EF6 278 aa10.85□□□□□ -0.67
CIITA-202ENST00000381835 FAM215AQ9Y5M1 114 aa10.85□□□□□ -0.67
CIITA-202ENST00000381835 TRBV5-7A0A0A0MS05 114 aa10.84□□□□□ -0.67
CIITA-202ENST00000381835 TMEM212A6NML5 194 aa10.84□□□□□ -0.67
CIITA-202ENST00000381835 CD3DP04234 171 aa10.84□□□□□ -0.67
CIITA-202ENST00000381835 PRSS3P35030 304 aa10.84□□□□□ -0.67
CIITA-202ENST00000381835 KIR2DL2P43627 348 aaPredicted RBP10.84□□□□□ -0.67
CIITA-202ENST00000381835 OR3A2P47893 321 aa10.84□□□□□ -0.67
CIITA-202ENST00000381835 TAF13Q15543 124 aa10.84□□□□□ -0.67
CIITA-202ENST00000381835 FBXW9Q5XUX1 488 aa10.84□□□□□ -0.67
CIITA-202ENST00000381835 VWA1Q6PCB0 445 aa10.84□□□□□ -0.67
CIITA-202ENST00000381835 GJC3Q8NFK1 279 aa10.84□□□□□ -0.67
CIITA-202ENST00000381835 OR6K3Q8NGY3 331 aa10.84□□□□□ -0.67
CIITA-202ENST00000381835 DVL3Q92997 716 aaPredicted RBP10.84□□□□□ -0.67
CIITA-202ENST00000381835 FBXW5Q969U6 566 aa10.84□□□□□ -0.67
CIITA-202ENST00000381835 CHST6Q9GZX3 395 aa10.84□□□□□ -0.67
CIITA-202ENST00000381835 SLC5A6Q9Y289 635 aa10.84□□□□□ -0.67
CIITA-202ENST00000381835 A0A096LPE4 126 aa10.84□□□□□ -0.67
CIITA-202ENST00000381835 TMEM272A0A1B0GTI8 110 aa10.84□□□□□ -0.67
CIITA-202ENST00000381835 A0A1W2PPZ6 126 aa10.84□□□□□ -0.67
CIITA-202ENST00000381835 ZNF878C9JN71 531 aa10.84□□□□□ -0.67
CIITA-202ENST00000381835 RPL36A-HNRNPH2H7BZ11 118 aa10.84□□□□□ -0.67
CIITA-202ENST00000381835 PRRG2O14669 202 aa10.84□□□□□ -0.67
CIITA-202ENST00000381835 KDM4BO94953 1096 aa10.84□□□□□ -0.67
CIITA-202ENST00000381835 PNPP00491 289 aa10.84□□□□□ -0.67
CIITA-202ENST00000381835 APOC3P02656 99 aa10.84□□□□□ -0.67
CIITA-202ENST00000381835 RPA2P15927 270 aa10.84□□□□□ -0.67
CIITA-202ENST00000381835 POU3F4P49335 361 aa10.84□□□□□ -0.67
CIITA-202ENST00000381835 GUSBP1Q15486 140 aa10.84□□□□□ -0.67
CIITA-202ENST00000381835 C1orf185Q5T7R7 199 aa10.84□□□□□ -0.67
CIITA-202ENST00000381835 STEAP1BQ6NZ63 245 aa10.84□□□□□ -0.67
CIITA-202ENST00000381835 SLC16A14Q7RTX9 510 aa10.84□□□□□ -0.67
CIITA-202ENST00000381835 SKA3Q8IX90 412 aa10.84□□□□□ -0.67
CIITA-202ENST00000381835 EIF4E3Q8N5X7 224 aaKnown RBP10.84□□□□□ -0.67
CIITA-202ENST00000381835 TSEN15Q8WW01 171 aaKnown RBP10.84□□□□□ -0.67
CIITA-202ENST00000381835 SH3BGRL2Q9UJC5 107 aa10.84□□□□□ -0.67
CIITA-202ENST00000381835 A0A1B0GW55 424 aa10.83□□□□□ -0.68
CIITA-202ENST00000381835 MBD3L4A6NDZ8 208 aaPredicted RBP10.83□□□□□ -0.68
CIITA-202ENST00000381835 MBD3L3A6NE82 208 aaPredicted RBP10.83□□□□□ -0.68
CIITA-202ENST00000381835 MBD3L5A6NJ08 208 aaPredicted RBP10.83□□□□□ -0.68
CIITA-202ENST00000381835 RFPL4AA6NLU0 287 aa10.83□□□□□ -0.68
CIITA-202ENST00000381835 HSPB2A8KAH6 182 aa10.83□□□□□ -0.68
CIITA-202ENST00000381835 RFPL4AL1F8VTS6 287 aa10.83□□□□□ -0.68
CIITA-202ENST00000381835 FARS2O95363 451 aaKnown RBP10.83□□□□□ -0.68
CIITA-202ENST00000381835 RLN2P04090 185 aa10.83□□□□□ -0.68
CIITA-202ENST00000381835 DUX4L2P0CJ85 424 aa10.83□□□□□ -0.68
CIITA-202ENST00000381835 DUX4L3P0CJ86 424 aa10.83□□□□□ -0.68
CIITA-202ENST00000381835 DUX4L4P0CJ87 422 aa10.83□□□□□ -0.68
CIITA-202ENST00000381835 DUX4L5P0CJ88 424 aa10.83□□□□□ -0.68
CIITA-202ENST00000381835 DUX4L6P0CJ89 424 aa10.83□□□□□ -0.68
CIITA-202ENST00000381835 DUX4L7P0CJ90 424 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms