RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 CALHM2Q9HA72 323 aa4.4□□□□□ -1.7
PCDH9-201ENST00000377861 NPVFQ9HCQ7 196 aa4.4□□□□□ -1.7
PCDH9-201ENST00000377861 IDSB3KWA1 339 aa4.4□□□□□ -1.7
PCDH9-201ENST00000377861 H0YL77 283 aa4.4□□□□□ -1.7
PCDH9-201ENST00000377861 KLF8O95600 359 aaPredicted RBP4.4□□□□□ -1.7
PCDH9-201ENST00000377861 SNRPBP14678 240 aaKnown RBP4.4□□□□□ -1.7
PCDH9-201ENST00000377861 CBR1P16152 277 aa4.4□□□□□ -1.7
PCDH9-201ENST00000377861 AAED1Q7RTV5 226 aa4.4□□□□□ -1.7
PCDH9-201ENST00000377861 SPNS2Q8IVW8 549 aa4.4□□□□□ -1.7
PCDH9-201ENST00000377861 APH1AQ96BI3 265 aa4.4□□□□□ -1.7
PCDH9-201ENST00000377861 TRPM3Q9HCF6 1732 aaPredicted RBP4.4□□□□□ -1.7
PCDH9-201ENST00000377861 EPHA1P21709 976 aa4.4□□□□□ -1.7
PCDH9-201ENST00000377861 Q6AWC8 147 aa4.4□□□□□ -1.7
PCDH9-201ENST00000377861 GAL3ST4Q96RP7 486 aa4.4□□□□□ -1.7
PCDH9-201ENST00000377861 OR2W1Q9Y3N9 320 aa4.4□□□□□ -1.7
PCDH9-201ENST00000377861 MT-ND4P03905 459 aa4.4□□□□□ -1.7
PCDH9-201ENST00000377861 C12orf54Q6X4T0 127 aa4.4□□□□□ -1.7
PCDH9-201ENST00000377861 ZNF436-AS1Q8NC38 126 aaPredicted RBP4.4□□□□□ -1.7
PCDH9-201ENST00000377861 OR13G1Q8NGZ3 307 aa4.4□□□□□ -1.7
PCDH9-201ENST00000377861 CCDC187A0A096LP49 1063 aa4.4□□□□□ -1.7
PCDH9-201ENST00000377861 DEFB132Q7Z7B7 95 aa4.4□□□□□ -1.7
PCDH9-201ENST00000377861 OR10Q1Q8NGQ4 319 aa4.4□□□□□ -1.7
PCDH9-201ENST00000377861 TMEM56Q96MV1 263 aa4.4□□□□□ -1.7
PCDH9-201ENST00000377861 ETV2O00321 342 aaPredicted RBP4.4□□□□□ -1.7
PCDH9-201ENST00000377861 GCM2O75603 506 aaPredicted RBP4.4□□□□□ -1.7
PCDH9-201ENST00000377861 SRFP11831 508 aa4.4□□□□□ -1.7
PCDH9-201ENST00000377861 RPS10P46783 165 aaKnown RBP4.4□□□□□ -1.7
PCDH9-201ENST00000377861 ZNF429Q86V71 674 aa4.4□□□□□ -1.7
PCDH9-201ENST00000377861 WWTR1Q9GZV5 400 aa4.4□□□□□ -1.7
PCDH9-201ENST00000377861 ST6GALNAC2Q9UJ37 374 aa4.4□□□□□ -1.7
PCDH9-201ENST00000377861 CD207Q9UJ71 328 aa4.4□□□□□ -1.7
PCDH9-201ENST00000377861 ST3GAL6Q9Y274 331 aa4.4□□□□□ -1.7
PCDH9-201ENST00000377861 FOLR3P41439 243 aa4.4□□□□□ -1.71
PCDH9-201ENST00000377861 RPL18Q07020 188 aaKnown RBP4.4□□□□□ -1.71
PCDH9-201ENST00000377861 GABRA6Q16445 453 aa4.4□□□□□ -1.71
PCDH9-201ENST00000377861 MOGAT1Q96PD6 335 aa4.4□□□□□ -1.71
PCDH9-201ENST00000377861 C12orf57Q99622 126 aa4.4□□□□□ -1.71
PCDH9-201ENST00000377861 ZNF98A6NK75 572 aa4.4□□□□□ -1.71
PCDH9-201ENST00000377861 TBC1D28Q2M2D7 210 aa4.4□□□□□ -1.71
PCDH9-201ENST00000377861 LIAT1Q6ZQX7 453 aa4.4□□□□□ -1.71
PCDH9-201ENST00000377861 H2BFWTQ7Z2G1 175 aa4.4□□□□□ -1.71
PCDH9-201ENST00000377861 SELENOHQ8IZQ5 122 aaKnown RBP4.4□□□□□ -1.71
PCDH9-201ENST00000377861 SLC35E1Q96K37 410 aa4.4□□□□□ -1.71
PCDH9-201ENST00000377861 LMF1Q96S06 567 aa4.4□□□□□ -1.71
PCDH9-201ENST00000377861 RBM24Q9BX46 236 aaKnown RBP4.4□□□□□ -1.71
PCDH9-201ENST00000377861 DECR2Q9NUI1 292 aa4.4□□□□□ -1.71
PCDH9-201ENST00000377861 ZNF724A8MTY0 619 aa4.4□□□□□ -1.71
PCDH9-201ENST00000377861 AKR7A3O95154 331 aa4.4□□□□□ -1.71
PCDH9-201ENST00000377861 SFTPCP11686 197 aa4.4□□□□□ -1.71
PCDH9-201ENST00000377861 DUSP15Q9H1R2 295 aaPredicted RBP4.4□□□□□ -1.71
PCDH9-201ENST00000377861 ING1Q9UK53 422 aaPredicted RBP4.4□□□□□ -1.71
PCDH9-201ENST00000377861 CSAG2Q9Y5P2 127 aa4.4□□□□□ -1.71
PCDH9-201ENST00000377861 C4orf17Q53FE4 359 aa4.4□□□□□ -1.71
PCDH9-201ENST00000377861 OR5B3Q8NH48 314 aa4.4□□□□□ -1.71
PCDH9-201ENST00000377861 TUBD1Q9UJT1 453 aa4.4□□□□□ -1.71
PCDH9-201ENST00000377861 SRD5A2P31213 254 aa4.4□□□□□ -1.71
PCDH9-201ENST00000377861 GGNBP1Q5YKI7 109 aa4.4□□□□□ -1.71
PCDH9-201ENST00000377861 MUC1P15941 1255 aaPredicted RBP4.4□□□□□ -1.71
PCDH9-201ENST00000377861 SLC10A1Q14973 349 aa4.4□□□□□ -1.71
PCDH9-201ENST00000377861 ZNF542PQ5EBM4 170 aa4.4□□□□□ -1.71
PCDH9-201ENST00000377861 ZNF511Q8NB15 262 aa4.4□□□□□ -1.71
PCDH9-201ENST00000377861 SLC22A20A6NK97 555 aa4.4□□□□□ -1.71
PCDH9-201ENST00000377861 ANGPTL7O43827 346 aa4.4□□□□□ -1.71
PCDH9-201ENST00000377861 ZNF273Q14593 569 aa4.4□□□□□ -1.71
PCDH9-201ENST00000377861 PAQR8Q8TEZ7 354 aa4.4□□□□□ -1.71
PCDH9-201ENST00000377861 TRBV24-1A0A075B6N3 115 aa4.4□□□□□ -1.71
PCDH9-201ENST00000377861 HRH1P35367 487 aa4.4□□□□□ -1.71
PCDH9-201ENST00000377861 PPP1CAP62136 330 aa4.4□□□□□ -1.71
PCDH9-201ENST00000377861 RHOBP62745 196 aa4.4□□□□□ -1.71
PCDH9-201ENST00000377861 KCNE5Q9UJ90 142 aa4.4□□□□□ -1.71
PCDH9-201ENST00000377861 OR2T10Q8NGZ9 312 aa4.4□□□□□ -1.71
PCDH9-201ENST00000377861 PHF7Q9BWX1 381 aaPredicted RBP4.4□□□□□ -1.71
PCDH9-201ENST00000377861 C3orf85A0A1B0GTC6 90 aa4.4□□□□□ -1.71
PCDH9-201ENST00000377861 F7P08709 466 aaPredicted RBP4.4□□□□□ -1.71
PCDH9-201ENST00000377861 TPPP2P59282 170 aa4.4□□□□□ -1.71
PCDH9-201ENST00000377861 PRDX4Q13162 271 aa4.4□□□□□ -1.71
PCDH9-201ENST00000377861 DNASE2BQ8WZ79 361 aa4.4□□□□□ -1.71
PCDH9-201ENST00000377861 FAM173AQ9BQD7 235 aa4.4□□□□□ -1.71
PCDH9-201ENST00000377861 RNF4P78317 190 aa4.4□□□□□ -1.71
PCDH9-201ENST00000377861 ZNF701Q9NV72 531 aaPredicted RBP4.4□□□□□ -1.71
PCDH9-201ENST00000377861 HSPB8Q9UJY1 196 aa4.4□□□□□ -1.71
PCDH9-201ENST00000377861 TNFSF15O95150 251 aa4.4□□□□□ -1.71
PCDH9-201ENST00000377861 CEACAM1P13688 526 aa4.4□□□□□ -1.71
PCDH9-201ENST00000377861 CTSFQ9UBX1 484 aa4.4□□□□□ -1.71
PCDH9-201ENST00000377861 SLCO1B1Q9Y6L6 691 aa4.4□□□□□ -1.71
PCDH9-201ENST00000377861 FAM231BA6NCW3 169 aa4.39□□□□□ -1.71
PCDH9-201ENST00000377861 PKIBQ9C010 78 aa4.39□□□□□ -1.71
PCDH9-201ENST00000377861 SH2D2AQ9NP31 389 aa4.39□□□□□ -1.71
PCDH9-201ENST00000377861 THYN1Q9P016 225 aa4.39□□□□□ -1.71
PCDH9-201ENST00000377861 TAAR3PQ9P1P4 343 aa4.39□□□□□ -1.71
PCDH9-201ENST00000377861 NHLRC2Q8NBF2 726 aa4.39□□□□□ -1.71
PCDH9-201ENST00000377861 N4BP2Q86UW6 1770 aaPredicted RBP4.39□□□□□ -1.71
PCDH9-201ENST00000377861 C2orf72A6NCS6 295 aa4.39□□□□□ -1.71
PCDH9-201ENST00000377861 CHRNB4P30926 498 aa4.39□□□□□ -1.71
PCDH9-201ENST00000377861 USP36Q9P275 1121 aaKnown RBP4.39□□□□□ -1.71
PCDH9-201ENST00000377861 TMEM33P57088 247 aa4.39□□□□□ -1.71
PCDH9-201ENST00000377861 RBPJQ06330 500 aa4.39□□□□□ -1.71
PCDH9-201ENST00000377861 ZNF718Q3SXZ3 478 aa4.39□□□□□ -1.71
PCDH9-201ENST00000377861 CHST5Q9GZS9 411 aa4.39□□□□□ -1.71
PCDH9-201ENST00000377861 GALNT9Q9HCQ5 603 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms