RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 DVL3Q92997 716 aaPredicted RBP1.97□□□□□ -2.09
VPS54-202ENST00000354504 C6orf62Q9GZU0 229 aaPredicted RBP1.97□□□□□ -2.09
VPS54-202ENST00000354504 ALX4Q9H161 411 aaPredicted RBP1.97□□□□□ -2.09
VPS54-202ENST00000354504 METTL17Q9H7H0 456 aaPredicted RBP1.97□□□□□ -2.09
VPS54-202ENST00000354504 TMEM27Q9HBJ8 222 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 ACKR4Q9NPB9 350 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 ABCB10Q9NRK6 738 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 CYTL1Q9NRR1 136 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 DLL3Q9NYJ7 618 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 TAS2R10Q9NYW0 307 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 TAS2R4Q9NYW5 299 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 CLCF1Q9UBD9 225 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 MGAT4CQ9UBM8 478 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 HSPB7Q9UBY9 170 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 DAPK2Q9UIK4 370 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 SSR3Q9UNL2 185 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 B3GALT5Q9Y2C3 310 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 AK6Q9Y3D8 172 aaKnown RBP1.97□□□□□ -2.09
VPS54-202ENST00000354504 SPTBN4Q9H254 2564 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 IGKV1-6A0A0C4DH72 117 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 A0A1W2PPK0 400 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 DAPL1A0PJW8 107 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 GGT3PA6NGU5 568 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 TMEM212A6NML5 194 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 OR2AT4A6NND4 320 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 SLC30A4O14863 429 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 TCRBP04435 133 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 IFNA16P05015 189 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 P0C879 139 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 GSTT2P0CG29 244 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 GSTT2BP0CG30 244 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 ZNF14P17017 642 aaPredicted RBP1.97□□□□□ -2.09
VPS54-202ENST00000354504 ZNF43P17038 809 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 TNFRSF1AP19438 455 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 TCEA1P23193 301 aaKnown RBP1.97□□□□□ -2.09
VPS54-202ENST00000354504 ZBTB25P24278 435 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 ATP6V1E1P36543 226 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 CAPZA2P47755 286 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 CLK1P49759 484 aaKnown RBP1.97□□□□□ -2.09
VPS54-202ENST00000354504 TAS2R43P59537 309 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 ERVK11-1P61568 191 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 COPZ1P61923 177 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 LSM6P62312 80 aaKnown RBP1.97□□□□□ -2.09
VPS54-202ENST00000354504 SLC3A1Q07837 685 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 CBX3Q13185 183 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 HERPUD1Q15011 391 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 TBRG1Q3YBR2 411 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 FAM27BQ5VT28 67 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 VWA1Q6PCB0 445 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 Q6ZR03 302 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 Q6ZS49 121 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 TMPPEQ6ZT21 453 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 UTS2BQ765I0 119 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 BTN2A1Q7KYR7 527 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 MS4A15Q8N5U1 240 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 YIPF7Q8N8F6 280 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 PNLDC1Q8NA58 520 aaKnown RBP1.97□□□□□ -2.09
VPS54-202ENST00000354504 OR10H4Q8NGA5 316 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 OR9K2Q8NGE7 335 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 OR4C16Q8NGL9 310 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 LYPD6BQ8NI32 183 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 DAZLQ92904 295 aaKnown RBP1.97□□□□□ -2.09
VPS54-202ENST00000354504 SGK3Q96BR1 496 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 MED30Q96HR3 178 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 ZNF414Q96IQ9 312 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 INTS14Q96SY0 518 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 EMC6Q9BV81 110 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 GTPBP2Q9BX10 602 aaKnown RBP1.97□□□□□ -2.09
VPS54-202ENST00000354504 TLNRD1Q9H1K6 362 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 C20orf85Q9H1P6 137 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 HES4Q9HCC6 221 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 MOV10Q9HCE1 1003 aaKnown RBP1.97□□□□□ -2.09
VPS54-202ENST00000354504 RCC2Q9P258 522 aaKnown RBP1.97□□□□□ -2.09
VPS54-202ENST00000354504 UPB1Q9UBR1 384 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 IL17BQ9UHF5 180 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 ZNF230Q9UIE0 474 aaPredicted RBP1.97□□□□□ -2.09
VPS54-202ENST00000354504 ZNF107Q9UII5 783 aaPredicted RBP1.97□□□□□ -2.09
VPS54-202ENST00000354504 MCTS1Q9ULC4 181 aaKnown RBP1.97□□□□□ -2.09
VPS54-202ENST00000354504 OSGIN2Q9Y236 505 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 DNAH10Q8IVF4 4471 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 DOCK11Q5JSL3 2073 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 AKAP6Q13023 2319 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 HECTD4Q9Y4D8 3996 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 A0A087WZY1 265 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 TRBV2A0A0J9YWF9 115 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 BLOC1S5-TXNDC5H3BN57 136 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 M0R3G1 203 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 TNFRSF13BO14836 293 aaPredicted RBP1.97□□□□□ -2.09
VPS54-202ENST00000354504 MYL12BO14950 172 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 RER1O15258 196 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 SULT1B1O43704 296 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 NME2P1O60361 137 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 OR10H2O60403 315 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 LDOC1O95751 146 aaPredicted RBP1.97□□□□□ -2.09
VPS54-202ENST00000354504 PTBP3O95758 552 aaKnown RBP1.97□□□□□ -2.09
VPS54-202ENST00000354504 TMEM225BP0DP42 221 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 PGCP20142 388 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 LOXP28300 417 aaPredicted RBP1.97□□□□□ -2.09
VPS54-202ENST00000354504 LAP3P28838 519 aa1.97□□□□□ -2.09
VPS54-202ENST00000354504 MPLP40238 635 aa1.97□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms