RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 RUNX2Q13950 521 aa11.41□□□□□ -0.58
COL6A3-203ENST00000353578 SYPL1Q16563 259 aa11.41□□□□□ -0.58
COL6A3-203ENST00000353578 C10orf35Q96D05 121 aa11.41□□□□□ -0.58
COL6A3-203ENST00000353578 ALKBH7Q9BT30 221 aaPredicted RBP11.41□□□□□ -0.58
COL6A3-203ENST00000353578 IKZF5Q9H5V7 419 aa11.41□□□□□ -0.58
COL6A3-203ENST00000353578 BARX1Q9HBU1 254 aaPredicted RBP11.41□□□□□ -0.58
COL6A3-203ENST00000353578 RBBP6Q7Z6E9 1792 aaKnown RBP11.41□□□□□ -0.58
COL6A3-203ENST00000353578 COX7A2P2O60397 106 aa11.41□□□□□ -0.58
COL6A3-203ENST00000353578 MORN1Q5T089 497 aa11.41□□□□□ -0.58
COL6A3-203ENST00000353578 PRSS45Q7RTY3 260 aa11.41□□□□□ -0.58
COL6A3-203ENST00000353578 C10orf126Q8N4M7 172 aa11.41□□□□□ -0.58
COL6A3-203ENST00000353578 IRF7Q92985 503 aa11.41□□□□□ -0.58
COL6A3-203ENST00000353578 B4DGG1 531 aa11.41□□□□□ -0.58
COL6A3-203ENST00000353578 XRCC2O43543 280 aa11.41□□□□□ -0.58
COL6A3-203ENST00000353578 SLCO2B1O94956 709 aa11.41□□□□□ -0.58
COL6A3-203ENST00000353578 KLF3P57682 345 aaPredicted RBP11.41□□□□□ -0.58
COL6A3-203ENST00000353578 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.41□□□□□ -0.58
COL6A3-203ENST00000353578 LOC105371267A0A1B0GV96 52 aa11.4□□□□□ -0.58
COL6A3-203ENST00000353578 CA3P07451 260 aa11.4□□□□□ -0.58
COL6A3-203ENST00000353578 CXCL9Q07325 125 aa11.4□□□□□ -0.58
COL6A3-203ENST00000353578 H1FNTQ75WM6 255 aaPredicted RBP11.4□□□□□ -0.58
COL6A3-203ENST00000353578 LIPHQ8WWY8 451 aa11.4□□□□□ -0.58
COL6A3-203ENST00000353578 TAS2R4Q9NYW5 299 aa11.4□□□□□ -0.58
COL6A3-203ENST00000353578 FBXL17Q9UF56 701 aa11.4□□□□□ -0.58
COL6A3-203ENST00000353578 CCL16O15467 120 aa11.4□□□□□ -0.58
COL6A3-203ENST00000353578 ZNF253O75346 499 aa11.4□□□□□ -0.58
COL6A3-203ENST00000353578 APCSP02743 223 aa11.4□□□□□ -0.58
COL6A3-203ENST00000353578 PLPP6Q8IY26 295 aa11.4□□□□□ -0.58
COL6A3-203ENST00000353578 ERGIC1Q969X5 290 aa11.4□□□□□ -0.58
COL6A3-203ENST00000353578 FANCMQ8IYD8 2048 aa11.4□□□□□ -0.58
COL6A3-203ENST00000353578 NKX6-3A6NJ46 265 aa11.4□□□□□ -0.58
COL6A3-203ENST00000353578 TBX18O95935 607 aa11.4□□□□□ -0.58
COL6A3-203ENST00000353578 MOB3CQ70IA8 216 aa11.4□□□□□ -0.58
COL6A3-203ENST00000353578 ATG2BQ96BY7 2078 aa11.4□□□□□ -0.58
COL6A3-203ENST00000353578 FAM171A2A8MVW0 826 aa11.4□□□□□ -0.58
COL6A3-203ENST00000353578 METAP1P53582 386 aa11.4□□□□□ -0.58
COL6A3-203ENST00000353578 SSX1Q16384 188 aa11.4□□□□□ -0.58
COL6A3-203ENST00000353578 OR1L4Q8NGR5 311 aa11.4□□□□□ -0.58
COL6A3-203ENST00000353578 TMEM190Q8WZ59 177 aa11.4□□□□□ -0.58
COL6A3-203ENST00000353578 SH2D1BO14796 132 aa11.4□□□□□ -0.58
COL6A3-203ENST00000353578 NXPH2O95156 264 aa11.4□□□□□ -0.58
COL6A3-203ENST00000353578 LCN2P80188 198 aa11.4□□□□□ -0.58
COL6A3-203ENST00000353578 DEGS2Q6QHC5 323 aa11.4□□□□□ -0.58
COL6A3-203ENST00000353578 GATSQ8NAP1 163 aa11.4□□□□□ -0.58
COL6A3-203ENST00000353578 CPEB3Q8NE35 698 aaKnown RBP11.4□□□□□ -0.58
COL6A3-203ENST00000353578 GOT1L1Q8NHS2 421 aaPredicted RBP11.4□□□□□ -0.58
COL6A3-203ENST00000353578 CDX2Q99626 313 aaPredicted RBP11.4□□□□□ -0.58
COL6A3-203ENST00000353578 RSRP1Q9BUV0 290 aa11.4□□□□□ -0.58
COL6A3-203ENST00000353578 ZNF250P15622 560 aa11.4□□□□□ -0.58
COL6A3-203ENST00000353578 CDC34P49427 236 aaPredicted RBP11.4□□□□□ -0.58
COL6A3-203ENST00000353578 PRAMEF5Q5TYX0 476 aa11.4□□□□□ -0.58
COL6A3-203ENST00000353578 PRAMEF6Q5VXH4 476 aa11.4□□□□□ -0.58
COL6A3-203ENST00000353578 PERPQ96FX8 193 aa11.4□□□□□ -0.58
COL6A3-203ENST00000353578 S1PR5Q9H228 398 aa11.4□□□□□ -0.58
COL6A3-203ENST00000353578 UBE2ZQ9H832 354 aaPredicted RBP11.4□□□□□ -0.58
COL6A3-203ENST00000353578 RCC2Q9P258 522 aaKnown RBP11.4□□□□□ -0.58
COL6A3-203ENST00000353578 OR2T8A6NH00 312 aa11.4□□□□□ -0.59
COL6A3-203ENST00000353578 THBS4P35443 961 aa11.4□□□□□ -0.59
COL6A3-203ENST00000353578 HTR5AP47898 357 aa11.4□□□□□ -0.59
COL6A3-203ENST00000353578 HFEQ30201 348 aa11.4□□□□□ -0.59
COL6A3-203ENST00000353578 FIGLAQ6QHK4 219 aa11.4□□□□□ -0.59
COL6A3-203ENST00000353578 NUBPLQ8TB37 319 aa11.4□□□□□ -0.59
COL6A3-203ENST00000353578 SPSB1Q96BD6 273 aa11.4□□□□□ -0.59
COL6A3-203ENST00000353578 CHRNA10Q9GZZ6 450 aa11.4□□□□□ -0.59
COL6A3-203ENST00000353578 SLC19A1P41440 591 aa11.4□□□□□ -0.59
COL6A3-203ENST00000353578 C18orf21Q32NC0 220 aaPredicted RBP11.4□□□□□ -0.59
COL6A3-203ENST00000353578 VN1R17PQ8TDU5 208 aa11.4□□□□□ -0.59
COL6A3-203ENST00000353578 SHDQ96IW2 340 aa11.4□□□□□ -0.59
COL6A3-203ENST00000353578 CSF3RQ99062 836 aa11.4□□□□□ -0.59
COL6A3-203ENST00000353578 TUBA4BQ9H853 241 aa11.4□□□□□ -0.59
COL6A3-203ENST00000353578 TMEM38BQ9NVV0 291 aa11.4□□□□□ -0.59
COL6A3-203ENST00000353578 IFITM10A6NMD0 228 aa11.39□□□□□ -0.59
COL6A3-203ENST00000353578 PIGCQ92535 297 aa11.39□□□□□ -0.59
COL6A3-203ENST00000353578 ADTRPQ96IZ2 230 aa11.39□□□□□ -0.59
COL6A3-203ENST00000353578 TNFRSF13CQ96RJ3 184 aa11.39□□□□□ -0.59
COL6A3-203ENST00000353578 FBXO4Q9UKT5 387 aa11.39□□□□□ -0.59
COL6A3-203ENST00000353578 FGF2P09038 288 aa11.39□□□□□ -0.59
COL6A3-203ENST00000353578 FAM78BQ5VT40 261 aa11.39□□□□□ -0.59
COL6A3-203ENST00000353578 FAM71E1Q6IPT2 247 aa11.39□□□□□ -0.59
COL6A3-203ENST00000353578 ZNF480Q8WV37 535 aa11.39□□□□□ -0.59
COL6A3-203ENST00000353578 RNF167Q9H6Y7 350 aa11.39□□□□□ -0.59
COL6A3-203ENST00000353578 A0A087WV62 115 aa11.39□□□□□ -0.59
COL6A3-203ENST00000353578 AQP7P3A6NL99 342 aa11.39□□□□□ -0.59
COL6A3-203ENST00000353578 F2RP25116 425 aa11.39□□□□□ -0.59
COL6A3-203ENST00000353578 MEOX1P50221 254 aa11.39□□□□□ -0.59
COL6A3-203ENST00000353578 TMEM33P57088 247 aa11.39□□□□□ -0.59
COL6A3-203ENST00000353578 TGIF2LXQ8IUE1 241 aa11.39□□□□□ -0.59
COL6A3-203ENST00000353578 GPX7Q96SL4 187 aaPredicted RBP11.39□□□□□ -0.59
COL6A3-203ENST00000353578 ALKBH4Q9NXW9 302 aa11.39□□□□□ -0.59
COL6A3-203ENST00000353578 INSL5Q9Y5Q6 135 aa11.39□□□□□ -0.59
COL6A3-203ENST00000353578 CICQ96RK0 1608 aaPredicted RBP11.39□□□□□ -0.59
COL6A3-203ENST00000353578 HNRNPA1P09651 372 aaKnown RBP eCLIP11.39□□□□□ -0.59
COL6A3-203ENST00000353578 SRSF9Q13242 221 aaKnown RBP eCLIP11.39□□□□□ -0.59
COL6A3-203ENST00000353578 PPP1R1AQ13522 171 aa11.39□□□□□ -0.59
COL6A3-203ENST00000353578 MFSD12Q6NUT3 480 aa11.39□□□□□ -0.59
COL6A3-203ENST00000353578 CALHM3Q86XJ0 350 aa11.39□□□□□ -0.59
COL6A3-203ENST00000353578 TNFSF18Q9UNG2 199 aa11.39□□□□□ -0.59
COL6A3-203ENST00000353578 DRGXA6NNA5 263 aa11.39□□□□□ -0.59
COL6A3-203ENST00000353578 DSCR3O14972 297 aa11.39□□□□□ -0.59
COL6A3-203ENST00000353578 CTAG2O75638 210 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms