RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 PECRQ9BY49 303 aa13.48□□□□□ -0.25
UPF3B-202ENST00000345865 GPR173Q9NS66 373 aa13.48□□□□□ -0.25
UPF3B-202ENST00000345865 MED9Q9NWA0 146 aa13.48□□□□□ -0.25
UPF3B-202ENST00000345865 IGKV1D-8A0A087WSZ0 117 aa13.48□□□□□ -0.25
UPF3B-202ENST00000345865 A0A0D9SG52 128 aa13.48□□□□□ -0.25
UPF3B-202ENST00000345865 EIF3IQ13347 325 aaKnown RBP13.48□□□□□ -0.25
UPF3B-202ENST00000345865 GPR137CQ8N3F9 429 aa13.48□□□□□ -0.25
UPF3B-202ENST00000345865 ARRDC1Q8N5I2 433 aa13.48□□□□□ -0.25
UPF3B-202ENST00000345865 DEFB123Q8N688 67 aa13.48□□□□□ -0.25
UPF3B-202ENST00000345865 OR10D3Q8NH80 312 aa13.48□□□□□ -0.25
UPF3B-202ENST00000345865 VRK1Q99986 396 aaPredicted RBP13.48□□□□□ -0.25
UPF3B-202ENST00000345865 RTBDNQ9BSG5 229 aaPredicted RBP13.48□□□□□ -0.25
UPF3B-202ENST00000345865 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13.48□□□□□ -0.25
UPF3B-202ENST00000345865 TMEM38BQ9NVV0 291 aa13.48□□□□□ -0.25
UPF3B-202ENST00000345865 COMMD9Q9P000 198 aa13.48□□□□□ -0.25
UPF3B-202ENST00000345865 GHRLQ9UBU3 117 aa13.48□□□□□ -0.25
UPF3B-202ENST00000345865 MSTNO14793 375 aa13.47□□□□□ -0.25
UPF3B-202ENST00000345865 DNPH1O43598 174 aa13.47□□□□□ -0.25
UPF3B-202ENST00000345865 TRAPPC6AO75865 159 aa13.47□□□□□ -0.25
UPF3B-202ENST00000345865 IGHEP01854 428 aa13.47□□□□□ -0.25
UPF3B-202ENST00000345865 ZNF32P17041 273 aa13.47□□□□□ -0.25
UPF3B-202ENST00000345865 AMY2BP19961 511 aa13.47□□□□□ -0.25
UPF3B-202ENST00000345865 RGS19P49795 217 aa13.47□□□□□ -0.25
UPF3B-202ENST00000345865 SNU13P55769 128 aaKnown RBP13.47□□□□□ -0.25
UPF3B-202ENST00000345865 SUPT4H1P63272 117 aaKnown RBP13.47□□□□□ -0.25
UPF3B-202ENST00000345865 RIPPLY1Q0D2K3 151 aa13.47□□□□□ -0.25
UPF3B-202ENST00000345865 TMEM128Q5BJH2 165 aa13.47□□□□□ -0.25
UPF3B-202ENST00000345865 FAM74A1Q5RGS3 127 aa13.47□□□□□ -0.25
UPF3B-202ENST00000345865 C6orf15Q6UXA7 325 aaPredicted RBP13.47□□□□□ -0.25
UPF3B-202ENST00000345865 LHFPL1Q86WI0 220 aa13.47□□□□□ -0.25
UPF3B-202ENST00000345865 OR5H2Q8NGV7 314 aa13.47□□□□□ -0.25
UPF3B-202ENST00000345865 AKR7LQ8NHP1 331 aa13.47□□□□□ -0.25
UPF3B-202ENST00000345865 RHBDD1Q8TEB9 315 aa13.47□□□□□ -0.25
UPF3B-202ENST00000345865 ZNF75AQ96N20 296 aa13.47□□□□□ -0.25
UPF3B-202ENST00000345865 DHRS9Q9BPW9 319 aa13.47□□□□□ -0.25
UPF3B-202ENST00000345865 TM2D1Q9BX74 207 aa13.47□□□□□ -0.25
UPF3B-202ENST00000345865 ELL3Q9HB65 397 aaPredicted RBP13.47□□□□□ -0.25
UPF3B-202ENST00000345865 P4HTMQ9NXG6 502 aa13.47□□□□□ -0.25
UPF3B-202ENST00000345865 COQ3Q9NZJ6 369 aa13.47□□□□□ -0.25
UPF3B-202ENST00000345865 ZNF581Q9P0T4 197 aa13.47□□□□□ -0.25
UPF3B-202ENST00000345865 IGKV1-27A0A075B6S5 117 aa13.47□□□□□ -0.25
UPF3B-202ENST00000345865 HTR3BO95264 441 aa13.47□□□□□ -0.25
UPF3B-202ENST00000345865 HPP00738 406 aa13.47□□□□□ -0.25
UPF3B-202ENST00000345865 SERPINF1P36955 418 aa13.47□□□□□ -0.25
UPF3B-202ENST00000345865 ZNF345Q14585 488 aa13.47□□□□□ -0.25
UPF3B-202ENST00000345865 RAB35Q15286 201 aa13.47□□□□□ -0.25
UPF3B-202ENST00000345865 DBX2Q6ZNG2 339 aa13.47□□□□□ -0.25
UPF3B-202ENST00000345865 C6orf201Q7Z4U5 140 aa13.47□□□□□ -0.25
UPF3B-202ENST00000345865 PEG10Q86TG7 708 aaKnown RBP13.47□□□□□ -0.25
UPF3B-202ENST00000345865 TMEM185AQ8NFB2 350 aa13.47□□□□□ -0.25
UPF3B-202ENST00000345865 KCNE4Q8WWG9 221 aa13.47□□□□□ -0.25
UPF3B-202ENST00000345865 ZNF845Q96IR2 970 aaPredicted RBP13.47□□□□□ -0.25
UPF3B-202ENST00000345865 MBD2Q9UBB5 411 aa13.47□□□□□ -0.25
UPF3B-202ENST00000345865 MCTS1Q9ULC4 181 aaKnown RBP13.47□□□□□ -0.25
UPF3B-202ENST00000345865 NCOR1O75376 2440 aa13.47□□□□□ -0.25
UPF3B-202ENST00000345865 FREM1Q5H8C1 2179 aa13.47□□□□□ -0.25
UPF3B-202ENST00000345865 MPTX1A8MV57 137 aa13.46□□□□□ -0.25
UPF3B-202ENST00000345865 LGALS8O00214 317 aa13.46□□□□□ -0.25
UPF3B-202ENST00000345865 ANGPTL7O43827 346 aa13.46□□□□□ -0.25
UPF3B-202ENST00000345865 MTRF1O75570 445 aaKnown RBP13.46□□□□□ -0.25
UPF3B-202ENST00000345865 OR2F2O95006 317 aa13.46□□□□□ -0.25
UPF3B-202ENST00000345865 ICAM2P13598 275 aa13.46□□□□□ -0.25
UPF3B-202ENST00000345865 DLSTP36957 453 aa13.46□□□□□ -0.25
UPF3B-202ENST00000345865 LUMP51884 338 aaPredicted RBP13.46□□□□□ -0.25
UPF3B-202ENST00000345865 SIGLEC14Q08ET2 396 aa13.46□□□□□ -0.25
UPF3B-202ENST00000345865 FOXO1Q12778 655 aa13.46□□□□□ -0.25
UPF3B-202ENST00000345865 OR2F1Q13607 317 aa13.46□□□□□ -0.25
UPF3B-202ENST00000345865 SSPNQ14714 243 aa13.46□□□□□ -0.25
UPF3B-202ENST00000345865 ACTBL2Q562R1 376 aa13.46□□□□□ -0.25
UPF3B-202ENST00000345865 ABLIM2Q6H8Q1 611 aa13.46□□□□□ -0.25
UPF3B-202ENST00000345865 DRAM2Q6UX65 266 aa13.46□□□□□ -0.25
UPF3B-202ENST00000345865 CLEC18BQ6UXF7 455 aa13.46□□□□□ -0.25
UPF3B-202ENST00000345865 AAED1Q7RTV5 226 aa13.46□□□□□ -0.25
UPF3B-202ENST00000345865 GALNTL5Q7Z4T8 443 aa13.46□□□□□ -0.25
UPF3B-202ENST00000345865 OR52H1Q8NGJ2 320 aa13.46□□□□□ -0.25
UPF3B-202ENST00000345865 OR1F12Q8NHA8 337 aa13.46□□□□□ -0.25
UPF3B-202ENST00000345865 REEP6Q96HR9 211 aa13.46□□□□□ -0.25
UPF3B-202ENST00000345865 HDHD3Q9BSH5 251 aaPredicted RBP13.46□□□□□ -0.25
UPF3B-202ENST00000345865 NUP50Q9UKX7 468 aa13.46□□□□□ -0.25
UPF3B-202ENST00000345865 OSGIN2Q9Y236 505 aa13.46□□□□□ -0.25
UPF3B-202ENST00000345865 FRYQ5TBA9 3013 aa13.46□□□□□ -0.25
UPF3B-202ENST00000345865 C13orf42A0A1B0GVH6 325 aa13.46□□□□□ -0.26
UPF3B-202ENST00000345865 CST2P09228 141 aa13.46□□□□□ -0.26
UPF3B-202ENST00000345865 PSG4Q00888 419 aa13.46□□□□□ -0.26
UPF3B-202ENST00000345865 SLC9A3R2Q15599 337 aa13.46□□□□□ -0.26
UPF3B-202ENST00000345865 FAM189A2Q15884 450 aa13.46□□□□□ -0.26
UPF3B-202ENST00000345865 SPINK14Q6IE38 97 aa13.46□□□□□ -0.26
UPF3B-202ENST00000345865 PLXDC2Q6UX71 529 aa13.46□□□□□ -0.26
UPF3B-202ENST00000345865 ACOT7LQ6ZUV0 252 aa13.46□□□□□ -0.26
UPF3B-202ENST00000345865 CSNK2A3Q8NEV1 391 aa13.46□□□□□ -0.26
UPF3B-202ENST00000345865 SEMA6DQ8NFY4 1073 aa13.46□□□□□ -0.26
UPF3B-202ENST00000345865 OR2V1Q8NHB1 315 aa13.46□□□□□ -0.26
UPF3B-202ENST00000345865 ABHD3Q8WU67 409 aa13.46□□□□□ -0.26
UPF3B-202ENST00000345865 C17orf50Q8WW18 174 aa13.46□□□□□ -0.26
UPF3B-202ENST00000345865 C10orf35Q96D05 121 aa13.46□□□□□ -0.26
UPF3B-202ENST00000345865 SPRY4Q9C004 299 aa13.46□□□□□ -0.26
UPF3B-202ENST00000345865 A0A1W2PNU3 283 aaPredicted RBP13.45□□□□□ -0.26
UPF3B-202ENST00000345865 C5orf51A6NDU8 294 aa13.45□□□□□ -0.26
UPF3B-202ENST00000345865 OR6C6A6NF89 314 aa13.45□□□□□ -0.26
UPF3B-202ENST00000345865 A8MXK9 166 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms