RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 TMEM169Q96HH4 297 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 ZNF286AQ9HBT8 521 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 RAB18Q9NP72 206 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 GALR2O43603 387 aaPredicted RBP3.19□□□□□ -1.9
SYNE1-201ENST00000341594 MMP3P08254 477 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 ELK1P19419 428 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 TM4SF1P30408 202 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 HTR1FP30939 366 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 ADRA1AP35348 466 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 C1orf53Q5VUE5 145 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 DNM1P46Q6ZS02 220 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 MDGA2Q7Z553 956 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 LAX1Q8IWV1 398 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 CCDC140Q96MF4 163 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 CPEB1Q9BZB8 566 aaKnown RBP3.19□□□□□ -1.9
SYNE1-201ENST00000341594 SRMP19623 302 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 PIGAP37287 484 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 CEACAM3P40198 252 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 UBE2G2P60604 165 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 SLC35B1P78383 322 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 HIST3H3Q16695 136 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 KIR3DL3Q8N743 410 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 OR10G2Q8NGC3 310 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 CDCA3Q99618 268 aaPredicted RBP3.19□□□□□ -1.9
SYNE1-201ENST00000341594 GDE1Q9NZC3 331 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 ATOH8Q96SQ7 321 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 SMOC2Q9H3U7 446 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 OR1A1Q9P1Q5 309 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 LIPT2A6NK58 231 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 F5H5P2 479 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 SCGB1A1P11684 91 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 BCKDHAP12694 445 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 HTR4Q13639 388 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 ST3GAL2Q16842 350 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 TRNP1Q6NT89 227 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 TMEM205Q6UW68 189 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 MPV17LQ2QL34 196 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 TIGD5Q53EQ6 642 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 KMT2BQ9UMN6 2715 aaPredicted RBP3.19□□□□□ -1.9
SYNE1-201ENST00000341594 TMEM265A0A087WTH1 108 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 DUXBA0A1W2PPF3 345 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 A8MT66 165 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 MMP11P24347 488 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 CST5P28325 142 aaPredicted RBP3.19□□□□□ -1.9
SYNE1-201ENST00000341594 ARL2-SNX15V9GYD0 113 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 SMIM35A0A1B0GVV1 85 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 SERF2P84101 59 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 ZNF154Q13106 437 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 RTN4RL2Q86UN3 420 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 TMEM145Q8NBT3 493 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 TRBV9A0A0B4J1U6 114 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 HELTA6NFD8 242 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 H7BYZ3 331 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 PPP1R3DO95685 299 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 PGA3P0DJD8 388 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 SLC16A14Q7RTX9 510 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 MTFP1Q9UDX5 166 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 FZD7O75084 574 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 PRSS3P35030 304 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 OR8B4Q96RC9 309 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 OR2J1Q9GZK6 312 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 TXNRD2Q9NNW7 524 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 FBXO34Q9NWN3 711 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 CTXN2P0C2S0 81 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 XCR1P46094 333 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 NPBWR2P48146 333 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 OR8G1Q15617 311 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 ZNF787Q6DD87 383 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 OR52B6Q8NGF0 335 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 OR56A1Q8NGH5 318 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 ALG8Q9BVK2 526 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 NMES1Q9C002 83 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 GPR173Q9NS66 373 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 ITGBL1O95965 494 aaPredicted RBP3.19□□□□□ -1.9
SYNE1-201ENST00000341594 CHRM2P08172 466 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 FTH1P19P0C7X4 201 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 TAS2R46P59540 309 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 CXCL9Q07325 125 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 UNQ9370/PRO34162Q6UXP9 181 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 OR2T33Q8NG76 320 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 RTN4RQ9BZR6 473 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 OBP2BQ9NPH6 170 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 OR14J1Q9UGF5 321 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 LOC389332A0A1B0GUA5 103 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 VEGFDO43915 354 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 EGR1P18146 543 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 SLC11A1P49279 550 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 C1orf162Q8NEQ5 155 aaPredicted RBP3.19□□□□□ -1.9
SYNE1-201ENST00000341594 ADAMTS17Q8TE56 1095 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 RSG1Q9BU20 258 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 P4HTMQ9NXG6 502 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 STARD10Q9Y365 291 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 HSD11B1P28845 292 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 CSNK1A1P48729 337 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 PPP2CBP62714 309 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 ACOT6Q3I5F7 207 aaPredicted RBP3.19□□□□□ -1.9
SYNE1-201ENST00000341594 PRRC1Q96M27 445 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 SLC46A1Q96NT5 459 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 CHRDL1Q9BU40 450 aa3.19□□□□□ -1.9
SYNE1-201ENST00000341594 AMDHD2Q9Y303 409 aa3.19□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms