RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 TRAPPC4Q9Y296 219 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 HEATR1Q9H583 2144 aaKnown RBP7.81□□□□□ -1.16
RTN3-202ENST00000339997 LRRC37AA6NMS7 1700 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 M0QZ24 198 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 ERVH48-1M5A8F1 160 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 MPC2O95563 127 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 PTBP3O95758 552 aaKnown RBP7.81□□□□□ -1.16
RTN3-202ENST00000339997 NDUFB7P17568 137 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 MEOX2P50222 304 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 RRADP55042 308 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 CDK5Q00535 292 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 ALKBH6Q3KRA9 238 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 NKAIN1Q4KMZ8 207 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 ZNF362Q5T0B9 420 aaPredicted RBP7.81□□□□□ -1.16
RTN3-202ENST00000339997 ZNF880Q6PDB4 577 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 DOK3Q7L591 496 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 C9orf62Q8N4C0 152 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 EXD3Q8N9H8 876 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 CMTM2Q8TAZ6 248 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 SPPL3Q8TCT6 385 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 GPA33Q99795 319 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 FAAP24Q9BTP7 215 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 HSF4Q9ULV5 492 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 GOLT1BQ9Y3E0 138 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 WSB1Q9Y6I7 421 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 MAST2Q6P0Q8 1798 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 TRIP11Q15643 1979 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 TRBV5-4A0A0C4DH59 114 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 UBE2L5PA0A1B0GUS4 154 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 E5RGE8 158 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 SLC17A2O00624 439 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 SPINT2O43291 252 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 NRASP01111 189 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 CXCL12P48061 93 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 SSR4P51571 173 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 TMEM128Q5BJH2 165 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 ZNF628Q5EBL2 1059 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 MAML2Q8IZL2 1156 aaPredicted RBP7.81□□□□□ -1.16
RTN3-202ENST00000339997 SIGLECL1Q8N7X8 197 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 MOGAT1Q96PD6 335 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 OR51I2Q9H344 312 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 NSG2Q9Y328 171 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 MED13LQ71F56 2210 aa7.81□□□□□ -1.16
RTN3-202ENST00000339997 K7EQM0 130 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 IGLV3-27P01718 113 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 OR8U8P0C7N1 319 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 CCL2P13500 99 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 TNFRSF4P43489 277 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 PPP1CAP62136 330 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 ENDOGQ14249 297 aaKnown RBP7.8□□□□□ -1.16
RTN3-202ENST00000339997 HES1Q14469 280 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 RPS19BP1Q86WX3 136 aaKnown RBP7.8□□□□□ -1.16
RTN3-202ENST00000339997 SFTPA1Q8IWL2 248 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 MEGF10Q96KG7 1140 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 VN1R1Q9GZP7 353 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 C8orf33Q9H7E9 229 aaPredicted RBP7.8□□□□□ -1.16
RTN3-202ENST00000339997 CA10Q9NS85 328 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 ZMAT5Q9UDW3 170 aaKnown RBP7.8□□□□□ -1.16
RTN3-202ENST00000339997 SERTM2A0A1B0GWG4 89 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 CDK2AP1O14519 115 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 CTSVO60911 334 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 TCTAP57738 103 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 FOXL2P58012 376 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 Q1RN00 199 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 CDONQ4KMG0 1287 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 TFAP2EQ6VUC0 442 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 MYPOPQ86VE0 399 aaPredicted RBP7.8□□□□□ -1.16
RTN3-202ENST00000339997 GCNT2Q8N0V5 402 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 CA13Q8N1Q1 262 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 LINC01555Q8NAE3 123 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 C11orf40Q8WZ69 217 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 MUCL1Q96DR8 90 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 DEFB108AA8MXU0 73 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 CFDP00746 253 aaPredicted RBP7.8□□□□□ -1.16
RTN3-202ENST00000339997 CRYBA1P05813 215 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 CEACAM5P06731 702 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 SPP1P10451 314 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 HNRNPA3P51991 378 aaKnown RBP7.8□□□□□ -1.16
RTN3-202ENST00000339997 ERVS71-1P61550 626 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 PJVKQ0ZLH3 352 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 FAM26DQ5JW98 314 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 ZNF626Q68DY1 528 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 SLC35G3Q8N808 338 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 OR4D10Q8NGI6 311 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 HGDQ93099 445 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 TMEM18Q96B42 140 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 SNX22Q96L94 193 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 PRRX2Q99811 253 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 NUDT9Q9BW91 350 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 ZBP1Q9H171 429 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 DEFB127Q9H1M4 99 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 PRDM7Q9NQW5 492 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 KCND3Q9UK17 655 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 WDR81Q562E7 1941 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 LAMA1P25391 3075 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 LINC01553A4QN01 128 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 TCAPO15273 167 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 IGHA2P01877 340 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 SLC25A6P12236 298 aa7.8□□□□□ -1.16
RTN3-202ENST00000339997 GAMTQ14353 236 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms