RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 Q9H521 79 aa13.36□□□□□ -0.27
CCDC28A-201ENST00000332797 PAK1IP1Q9NWT1 392 aaPredicted RBP13.36□□□□□ -0.27
CCDC28A-201ENST00000332797 BABAM2Q9NXR7 383 aa13.36□□□□□ -0.27
CCDC28A-201ENST00000332797 UBAP1Q9NZ09 502 aa13.36□□□□□ -0.27
CCDC28A-201ENST00000332797 HHLA2Q9UM44 414 aa13.36□□□□□ -0.27
CCDC28A-201ENST00000332797 TPRKBQ9Y3C4 175 aa13.36□□□□□ -0.27
CCDC28A-201ENST00000332797 ANKRD61A6NGH8 418 aa13.36□□□□□ -0.27
CCDC28A-201ENST00000332797 CDIPTO14735 213 aa13.36□□□□□ -0.27
CCDC28A-201ENST00000332797 ZFPL1O95159 310 aa13.36□□□□□ -0.27
CCDC28A-201ENST00000332797 ZNF16P17020 682 aaPredicted RBP13.36□□□□□ -0.27
CCDC28A-201ENST00000332797 ZNF20P17024 532 aa13.36□□□□□ -0.27
CCDC28A-201ENST00000332797 MDH2P40926 338 aaKnown RBP13.36□□□□□ -0.27
CCDC28A-201ENST00000332797 GZMKP49863 264 aa13.36□□□□□ -0.27
CCDC28A-201ENST00000332797 CDK5R1Q15078 307 aa13.36□□□□□ -0.27
CCDC28A-201ENST00000332797 CCDC58Q4VC31 144 aa13.36□□□□□ -0.27
CCDC28A-201ENST00000332797 CYB5R2Q6BCY4 276 aa13.36□□□□□ -0.27
CCDC28A-201ENST00000332797 C11orf53Q8IXP5 236 aa13.36□□□□□ -0.27
CCDC28A-201ENST00000332797 C19orf18Q8NEA5 215 aa13.36□□□□□ -0.27
CCDC28A-201ENST00000332797 OR5A2Q8NGI9 324 aa13.36□□□□□ -0.27
CCDC28A-201ENST00000332797 OR51A4Q8NGJ6 313 aa13.36□□□□□ -0.27
CCDC28A-201ENST00000332797 OR13C3Q8NGS6 347 aa13.36□□□□□ -0.27
CCDC28A-201ENST00000332797 RPL3LQ92901 407 aaKnown RBP13.36□□□□□ -0.27
CCDC28A-201ENST00000332797 TLNRD1Q9H1K6 362 aa13.36□□□□□ -0.27
CCDC28A-201ENST00000332797 ZNF665Q9H7R5 613 aa13.36□□□□□ -0.27
CCDC28A-201ENST00000332797 TRIM36Q9NQ86 728 aa13.36□□□□□ -0.27
CCDC28A-201ENST00000332797 ERVK-18Q9QC07 812 aa13.36□□□□□ -0.27
CCDC28A-201ENST00000332797 PPIAL4EA0A075B759 164 aa13.35□□□□□ -0.27
CCDC28A-201ENST00000332797 OR5B21A6NL26 309 aa13.35□□□□□ -0.27
CCDC28A-201ENST00000332797 PPIAL4DF5H284 164 aa13.35□□□□□ -0.27
CCDC28A-201ENST00000332797 CD5LO43866 347 aa13.35□□□□□ -0.27
CCDC28A-201ENST00000332797 LALBAP00709 142 aa13.35□□□□□ -0.27
CCDC28A-201ENST00000332797 PPIAL4FP0DN26 164 aa13.35□□□□□ -0.27
CCDC28A-201ENST00000332797 CD80P33681 288 aa13.35□□□□□ -0.27
CCDC28A-201ENST00000332797 LMO4P61968 165 aa13.35□□□□□ -0.27
CCDC28A-201ENST00000332797 GNG3P63215 75 aa13.35□□□□□ -0.27
CCDC28A-201ENST00000332797 SLC35A2P78381 396 aa13.35□□□□□ -0.27
CCDC28A-201ENST00000332797 LRRC28Q86X40 367 aaPredicted RBP13.35□□□□□ -0.27
CCDC28A-201ENST00000332797 SPICQ8N5J4 248 aa13.35□□□□□ -0.27
CCDC28A-201ENST00000332797 SCCPDHQ8NBX0 429 aa13.35□□□□□ -0.27
CCDC28A-201ENST00000332797 ZNF485Q8NCK3 441 aa13.35□□□□□ -0.27
CCDC28A-201ENST00000332797 NPRL2Q8WTW4 380 aa13.35□□□□□ -0.27
CCDC28A-201ENST00000332797 LRRC29Q8WV35 223 aa13.35□□□□□ -0.27
CCDC28A-201ENST00000332797 TSEN15Q8WW01 171 aaKnown RBP13.35□□□□□ -0.27
CCDC28A-201ENST00000332797 FGGYQ96C11 551 aa13.35□□□□□ -0.27
CCDC28A-201ENST00000332797 C10orf35Q96D05 121 aa13.35□□□□□ -0.27
CCDC28A-201ENST00000332797 ADAT3Q96EY9 351 aaPredicted RBP13.35□□□□□ -0.27
CCDC28A-201ENST00000332797 CHST5Q9GZS9 411 aa13.35□□□□□ -0.27
CCDC28A-201ENST00000332797 METTL17Q9H7H0 456 aaPredicted RBP13.35□□□□□ -0.27
CCDC28A-201ENST00000332797 PCDHB10Q9UN67 800 aa13.35□□□□□ -0.27
CCDC28A-201ENST00000332797 ERGIC3Q9Y282 383 aa13.35□□□□□ -0.27
CCDC28A-201ENST00000332797 PPIAL4AQ9Y536 164 aa13.35□□□□□ -0.27
CCDC28A-201ENST00000332797 SIRT4Q9Y6E7 314 aaPredicted RBP13.35□□□□□ -0.27
CCDC28A-201ENST00000332797 GATBO75879 557 aaKnown RBP13.34□□□□□ -0.27
CCDC28A-201ENST00000332797 IGHV2-5P01817 119 aa13.34□□□□□ -0.27
CCDC28A-201ENST00000332797 CRHBPP24387 322 aa13.34□□□□□ -0.27
CCDC28A-201ENST00000332797 WNT4P56705 351 aa13.34□□□□□ -0.27
CCDC28A-201ENST00000332797 TMEM155Q4W5P6 130 aa13.34□□□□□ -0.27
CCDC28A-201ENST00000332797 FAM76BQ5HYJ3 339 aa13.34□□□□□ -0.27
CCDC28A-201ENST00000332797 WDR82Q6UXN9 313 aa13.34□□□□□ -0.27
CCDC28A-201ENST00000332797 MUC20Q8N307 709 aaPredicted RBP13.34□□□□□ -0.27
CCDC28A-201ENST00000332797 GCSAMQ8N6F7 178 aa13.34□□□□□ -0.27
CCDC28A-201ENST00000332797 NANOGP1Q8N7R0 232 aa13.34□□□□□ -0.27
CCDC28A-201ENST00000332797 ZFP41Q8N8Y5 198 aa13.34□□□□□ -0.27
CCDC28A-201ENST00000332797 DEFB108BQ8NET1 73 aa13.34□□□□□ -0.27
CCDC28A-201ENST00000332797 TRMT10AQ8TBZ6 339 aaKnown RBP13.34□□□□□ -0.27
CCDC28A-201ENST00000332797 PP6455Q8WZ26 134 aa13.34□□□□□ -0.27
CCDC28A-201ENST00000332797 RAB39BQ96DA2 213 aa13.34□□□□□ -0.27
CCDC28A-201ENST00000332797 MSI2Q96DH6 328 aaKnown RBP13.34□□□□□ -0.27
CCDC28A-201ENST00000332797 MND1Q9BWT6 205 aa13.34□□□□□ -0.27
CCDC28A-201ENST00000332797 SLC7A11Q9UPY5 501 aa13.34□□□□□ -0.27
CCDC28A-201ENST00000332797 FAM230AA0A1W2PPH8 454 aa13.33□□□□□ -0.28
CCDC28A-201ENST00000332797 FAM157AC9JC47 383 aa13.33□□□□□ -0.28
CCDC28A-201ENST00000332797 C3orf80F5H4A9 247 aa13.33□□□□□ -0.28
CCDC28A-201ENST00000332797 OGG1O15527 345 aa13.33□□□□□ -0.28
CCDC28A-201ENST00000332797 RGS10O43665 173 aa13.33□□□□□ -0.28
CCDC28A-201ENST00000332797 SERPINA3P01011 423 aa13.33□□□□□ -0.28
CCDC28A-201ENST00000332797 RPSAP08865 295 aaKnown RBP13.33□□□□□ -0.28
CCDC28A-201ENST00000332797 EGR1P18146 543 aa13.33□□□□□ -0.28
CCDC28A-201ENST00000332797 UBE2V2Q15819 145 aa13.33□□□□□ -0.28
CCDC28A-201ENST00000332797 RBM48Q5RL73 367 aaKnown RBP13.33□□□□□ -0.28
CCDC28A-201ENST00000332797 SFRP4Q6FHJ7 346 aaPredicted RBP13.33□□□□□ -0.28
CCDC28A-201ENST00000332797 RPS4Y2Q8TD47 263 aa13.33□□□□□ -0.28
CCDC28A-201ENST00000332797 SMIM19Q96E16 107 aa13.33□□□□□ -0.28
CCDC28A-201ENST00000332797 CDCA4Q9BXL8 241 aa13.33□□□□□ -0.28
CCDC28A-201ENST00000332797 CCDC90BQ9GZT6 254 aa13.33□□□□□ -0.28
CCDC28A-201ENST00000332797 OR51I2Q9H344 312 aa13.33□□□□□ -0.28
CCDC28A-201ENST00000332797 DUSP21Q9H596 190 aa13.33□□□□□ -0.28
CCDC28A-201ENST00000332797 LPAR2Q9HBW0 351 aa13.33□□□□□ -0.28
CCDC28A-201ENST00000332797 TMEM165Q9HC07 324 aa13.33□□□□□ -0.28
CCDC28A-201ENST00000332797 YAE1D1Q9NRH1 226 aa13.33□□□□□ -0.28
CCDC28A-201ENST00000332797 DHDHQ9UQ10 334 aa13.33□□□□□ -0.28
CCDC28A-201ENST00000332797 PNMA8CA0A1B0GUJ8 204 aa13.32□□□□□ -0.28
CCDC28A-201ENST00000332797 PQLC2LA1A4F0 135 aa13.32□□□□□ -0.28
CCDC28A-201ENST00000332797 CEACAM18A8MTB9 384 aa13.32□□□□□ -0.28
CCDC28A-201ENST00000332797 DENRO43583 198 aaKnown RBP13.32□□□□□ -0.28
CCDC28A-201ENST00000332797 MT-ND2P03891 347 aa13.32□□□□□ -0.28
CCDC28A-201ENST00000332797 TAS2R43P59537 309 aa13.32□□□□□ -0.28
CCDC28A-201ENST00000332797 GMFBP60983 142 aa13.32□□□□□ -0.28
CCDC28A-201ENST00000332797 DOC2BQ14184 412 aa13.32□□□□□ -0.28
CCDC28A-201ENST00000332797 CNN3Q15417 329 aaKnown RBP13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms