RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 TMEM244Q5VVB8 128 aa11.74□□□□□ -0.53
LIMS1-201ENST00000332345 SFRP4Q6FHJ7 346 aaPredicted RBP11.74□□□□□ -0.53
LIMS1-201ENST00000332345 FAHD2BQ6P2I3 314 aaPredicted RBP11.74□□□□□ -0.53
LIMS1-201ENST00000332345 DCDC5Q6ZRR9 648 aa11.74□□□□□ -0.53
LIMS1-201ENST00000332345 NLRC3Q7RTR2 1065 aa11.74□□□□□ -0.53
LIMS1-201ENST00000332345 SYS1Q8N2H4 156 aa11.74□□□□□ -0.53
LIMS1-201ENST00000332345 PRSS35Q8N3Z0 413 aa11.74□□□□□ -0.53
LIMS1-201ENST00000332345 OR2G2Q8NGZ5 317 aa11.74□□□□□ -0.53
LIMS1-201ENST00000332345 CNIH3Q8TBE1 160 aa11.74□□□□□ -0.53
LIMS1-201ENST00000332345 HAVCR2Q8TDQ0 301 aa11.74□□□□□ -0.53
LIMS1-201ENST00000332345 FAHD2AQ96GK7 314 aa11.74□□□□□ -0.53
LIMS1-201ENST00000332345 C4orf36Q96KX1 117 aa11.74□□□□□ -0.53
LIMS1-201ENST00000332345 TLNRD1Q9H1K6 362 aa11.74□□□□□ -0.53
LIMS1-201ENST00000332345 FGF20Q9NP95 211 aaPredicted RBP11.74□□□□□ -0.53
LIMS1-201ENST00000332345 ANK3Q12955 4377 aaKnown RBP11.74□□□□□ -0.53
LIMS1-201ENST00000332345 ARHGAP32A7KAX9 2087 aa11.74□□□□□ -0.53
LIMS1-201ENST00000332345 PPIAL4CA0A0B4J2A2 164 aa11.73□□□□□ -0.53
LIMS1-201ENST00000332345 A0A0G2JMP0 313 aa11.73□□□□□ -0.53
LIMS1-201ENST00000332345 A0A0X1KG70 313 aa11.73□□□□□ -0.53
LIMS1-201ENST00000332345 OOEPA6NGQ2 149 aa11.73□□□□□ -0.53
LIMS1-201ENST00000332345 OR5B21A6NL26 309 aa11.73□□□□□ -0.53
LIMS1-201ENST00000332345 ZNF732B4DXR9 585 aa11.73□□□□□ -0.53
LIMS1-201ENST00000332345 F5H0A9 414 aaPredicted RBP11.73□□□□□ -0.53
LIMS1-201ENST00000332345 C3orf80F5H4A9 247 aa11.73□□□□□ -0.53
LIMS1-201ENST00000332345 SERPINA3P01011 423 aa11.73□□□□□ -0.53
LIMS1-201ENST00000332345 RPS2P15880 293 aaKnown RBP11.73□□□□□ -0.53
LIMS1-201ENST00000332345 GBX2P52951 348 aaPredicted RBP11.73□□□□□ -0.53
LIMS1-201ENST00000332345 LCN2P80188 198 aa11.73□□□□□ -0.53
LIMS1-201ENST00000332345 MED21Q13503 144 aa11.73□□□□□ -0.53
LIMS1-201ENST00000332345 MICBQ29980 383 aa11.73□□□□□ -0.53
LIMS1-201ENST00000332345 PLCXD3Q63HM9 321 aa11.73□□□□□ -0.53
LIMS1-201ENST00000332345 TMEM42Q69YG0 159 aa11.73□□□□□ -0.53
LIMS1-201ENST00000332345 WDR82Q6UXN9 313 aa11.73□□□□□ -0.53
LIMS1-201ENST00000332345 WDR86Q86TI4 376 aa11.73□□□□□ -0.53
LIMS1-201ENST00000332345 GCSAMQ8N6F7 178 aa11.73□□□□□ -0.53
LIMS1-201ENST00000332345 SCCPDHQ8NBX0 429 aa11.73□□□□□ -0.53
LIMS1-201ENST00000332345 OR4M2Q8NGB6 313 aa11.73□□□□□ -0.53
LIMS1-201ENST00000332345 OR8B3Q8NGG8 313 aa11.73□□□□□ -0.53
LIMS1-201ENST00000332345 OR10Z1Q8NGY1 313 aa11.73□□□□□ -0.53
LIMS1-201ENST00000332345 ZNF671Q8TAW3 534 aa11.73□□□□□ -0.53
LIMS1-201ENST00000332345 LRRC29Q8WV35 223 aa11.73□□□□□ -0.53
LIMS1-201ENST00000332345 TFAP2CQ92754 450 aa11.73□□□□□ -0.53
LIMS1-201ENST00000332345 C10orf35Q96D05 121 aa11.73□□□□□ -0.53
LIMS1-201ENST00000332345 PELI1Q96FA3 418 aa11.73□□□□□ -0.53
LIMS1-201ENST00000332345 NEIL1Q96FI4 390 aaPredicted RBP11.73□□□□□ -0.53
LIMS1-201ENST00000332345 OR8B2Q96RD0 313 aa11.73□□□□□ -0.53
LIMS1-201ENST00000332345 VCX3BQ9H321 246 aa11.73□□□□□ -0.53
LIMS1-201ENST00000332345 METTL17Q9H7H0 456 aaPredicted RBP11.73□□□□□ -0.53
LIMS1-201ENST00000332345 PLEKHA1Q9HB21 404 aa11.73□□□□□ -0.53
LIMS1-201ENST00000332345 CHCHD3Q9NX63 227 aaKnown RBP11.73□□□□□ -0.53
LIMS1-201ENST00000332345 FRRS1LQ9P0K9 344 aa11.73□□□□□ -0.53
LIMS1-201ENST00000332345 LRCH1Q9Y2L9 728 aa11.73□□□□□ -0.53
LIMS1-201ENST00000332345 J3QLI3 93 aa11.72□□□□□ -0.53
LIMS1-201ENST00000332345 IFNA2P01563 188 aa11.72□□□□□ -0.53
LIMS1-201ENST00000332345 ISG15P05161 165 aa11.72□□□□□ -0.53
LIMS1-201ENST00000332345 FAM157CP0CG43 387 aa11.72□□□□□ -0.53
LIMS1-201ENST00000332345 MUC1P15941 1255 aaPredicted RBP11.72□□□□□ -0.53
LIMS1-201ENST00000332345 ZFP36P26651 326 aaKnown RBP11.72□□□□□ -0.53
LIMS1-201ENST00000332345 KIR3DL2P43630 455 aa11.72□□□□□ -0.53
LIMS1-201ENST00000332345 GNB2P62879 340 aa11.72□□□□□ -0.53
LIMS1-201ENST00000332345 CSNK2BP67870 215 aa11.72□□□□□ -0.53
LIMS1-201ENST00000332345 ALKBH1Q13686 389 aaKnown RBP11.72□□□□□ -0.53
LIMS1-201ENST00000332345 DCAF12L2Q5VW00 463 aa11.72□□□□□ -0.53
LIMS1-201ENST00000332345 TMPRSS11AQ6ZMR5 421 aa11.72□□□□□ -0.53
LIMS1-201ENST00000332345 RDH10Q8IZV5 341 aa11.72□□□□□ -0.53
LIMS1-201ENST00000332345 TEX29Q8N6K0 151 aa11.72□□□□□ -0.53
LIMS1-201ENST00000332345 C19orf18Q8NEA5 215 aa11.72□□□□□ -0.53
LIMS1-201ENST00000332345 HPSE2Q8WWQ2 592 aa11.72□□□□□ -0.53
LIMS1-201ENST00000332345 RPL3LQ92901 407 aaKnown RBP11.72□□□□□ -0.53
LIMS1-201ENST00000332345 RNF166Q96A37 237 aaPredicted RBP11.72□□□□□ -0.53
LIMS1-201ENST00000332345 SSBP3Q9BWW4 388 aaPredicted RBP11.72□□□□□ -0.53
LIMS1-201ENST00000332345 JAM3Q9BX67 310 aa11.72□□□□□ -0.53
LIMS1-201ENST00000332345 OR51I2Q9H344 312 aa11.72□□□□□ -0.53
LIMS1-201ENST00000332345 ISG20L2Q9H9L3 353 aaKnown RBP11.72□□□□□ -0.53
LIMS1-201ENST00000332345 SLC7A11Q9UPY5 501 aa11.72□□□□□ -0.53
LIMS1-201ENST00000332345 POLR3KQ9Y2Y1 108 aaPredicted RBP11.72□□□□□ -0.53
LIMS1-201ENST00000332345 LOC107986453A0A1B0GWG9 222 aa11.71□□□□□ -0.53
LIMS1-201ENST00000332345 EFCAB10A6NFE3 127 aa11.71□□□□□ -0.53
LIMS1-201ENST00000332345 A6NIN4 97 aa11.71□□□□□ -0.53
LIMS1-201ENST00000332345 GATBO75879 557 aaKnown RBP11.71□□□□□ -0.53
LIMS1-201ENST00000332345 GNAO1P09471 354 aa11.71□□□□□ -0.53
LIMS1-201ENST00000332345 SRD5A1P18405 259 aa11.71□□□□□ -0.53
LIMS1-201ENST00000332345 MYL12AP19105 171 aa11.71□□□□□ -0.53
LIMS1-201ENST00000332345 CD80P33681 288 aa11.71□□□□□ -0.53
LIMS1-201ENST00000332345 SRP14P37108 136 aaKnown RBP11.71□□□□□ -0.53
LIMS1-201ENST00000332345 NPY4RP50391 375 aa11.71□□□□□ -0.53
LIMS1-201ENST00000332345 NANOS3P60323 173 aaKnown RBP11.71□□□□□ -0.53
LIMS1-201ENST00000332345 TEX36Q5VZQ5 186 aa11.71□□□□□ -0.53
LIMS1-201ENST00000332345 ZNF573Q86YE8 665 aa11.71□□□□□ -0.53
LIMS1-201ENST00000332345 ZNF676Q8N7Q3 588 aa11.71□□□□□ -0.53
LIMS1-201ENST00000332345 PP6455Q8WZ26 134 aa11.71□□□□□ -0.53
LIMS1-201ENST00000332345 TMEM80Q96HE8 168 aa11.71□□□□□ -0.53
LIMS1-201ENST00000332345 TECTBQ96PL2 329 aa11.71□□□□□ -0.53
LIMS1-201ENST00000332345 ZNF649Q9BS31 505 aa11.71□□□□□ -0.53
LIMS1-201ENST00000332345 GPR173Q9NS66 373 aa11.71□□□□□ -0.53
LIMS1-201ENST00000332345 ERVK-18Q9QC07 812 aa11.71□□□□□ -0.53
LIMS1-201ENST00000332345 CLN8Q9UBY8 286 aa11.71□□□□□ -0.53
LIMS1-201ENST00000332345 OR5V1Q9UGF6 321 aa11.71□□□□□ -0.53
LIMS1-201ENST00000332345 CAB39Q9Y376 341 aaPredicted RBP11.71□□□□□ -0.53
LIMS1-201ENST00000332345 EXOSC1Q9Y3B2 195 aaKnown RBP11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms