RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 PTGES3Q15185 160 aaKnown RBP2.03□□□□□ -2.08
HMGB1-201ENST00000326004 SYCP1Q15431 976 aa2.03□□□□□ -2.08
HMGB1-201ENST00000326004 FAM71E1Q6IPT2 247 aa2.03□□□□□ -2.08
HMGB1-201ENST00000326004 ZNF547Q8IVP9 402 aa2.03□□□□□ -2.08
HMGB1-201ENST00000326004 ST13P4Q8IZP2 240 aaPredicted RBP2.03□□□□□ -2.08
HMGB1-201ENST00000326004 OR10R2Q8NGX6 335 aa2.03□□□□□ -2.08
HMGB1-201ENST00000326004 OR4S2Q8NH73 311 aa2.03□□□□□ -2.08
HMGB1-201ENST00000326004 ZBED3Q96IU2 234 aaPredicted RBP2.03□□□□□ -2.08
HMGB1-201ENST00000326004 WFIKKN1Q96NZ8 548 aa2.03□□□□□ -2.08
HMGB1-201ENST00000326004 HINT2Q9BX68 163 aa2.03□□□□□ -2.08
HMGB1-201ENST00000326004 NAA50Q9GZZ1 169 aaKnown RBP2.03□□□□□ -2.08
HMGB1-201ENST00000326004 RAB1BQ9H0U4 201 aa2.03□□□□□ -2.08
HMGB1-201ENST00000326004 DEFB129Q9H1M3 183 aa2.03□□□□□ -2.08
HMGB1-201ENST00000326004 RPP21Q9H633 154 aaKnown RBP2.03□□□□□ -2.08
HMGB1-201ENST00000326004 TMEM38AQ9H6F2 299 aa2.03□□□□□ -2.08
HMGB1-201ENST00000326004 RPF2Q9H7B2 306 aaKnown RBP2.03□□□□□ -2.08
HMGB1-201ENST00000326004 SPACA1Q9HBV2 294 aa2.03□□□□□ -2.08
HMGB1-201ENST00000326004 NOX3Q9HBY0 568 aa2.03□□□□□ -2.08
HMGB1-201ENST00000326004 CD209Q9NNX6 404 aa2.03□□□□□ -2.08
HMGB1-201ENST00000326004 SLC40A1Q9NP59 571 aa2.03□□□□□ -2.08
HMGB1-201ENST00000326004 ZNF302Q9NR11 478 aa2.03□□□□□ -2.08
HMGB1-201ENST00000326004 CLN6Q9NWW5 311 aa2.03□□□□□ -2.08
HMGB1-201ENST00000326004 ADA2Q9NZK5 511 aa2.03□□□□□ -2.08
HMGB1-201ENST00000326004 ZNF629Q9UEG4 869 aaPredicted RBP2.03□□□□□ -2.08
HMGB1-201ENST00000326004 ZFYVE26Q68DK2 2539 aa2.03□□□□□ -2.08
HMGB1-201ENST00000326004 FBN3Q75N90 2809 aa2.03□□□□□ -2.09
HMGB1-201ENST00000326004 KMT2EQ8IZD2 1858 aa2.03□□□□□ -2.09
HMGB1-201ENST00000326004 RIF1Q5UIP0 2472 aaKnown RBP2.02□□□□□ -2.09
HMGB1-201ENST00000326004 CIB4A0PJX0 185 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 TSPAN11A1L157 253 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 LYRM9A8MSI8 78 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 CENPXA8MT69 81 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 HIDE1A8MVS5 230 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 H7C0C1 242 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 PLPP1O14494 284 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 CETN3O15182 167 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 ATP8B1O43520 1251 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 XRCC2O43543 280 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 SLC19A2O60779 497 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 FKBP6O75344 327 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 ENTPD5O75356 428 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 UTS2O95399 124 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 LSM8O95777 96 aaKnown RBP2.02□□□□□ -2.09
HMGB1-201ENST00000326004 PRB1P04280 392 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 KLK1P06870 262 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 RETP07949 1114 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 GPX4P36969 197 aaPredicted RBP2.02□□□□□ -2.09
HMGB1-201ENST00000326004 RFC3P40938 356 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 CSKP41240 450 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 SERPINB8P50452 374 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 LINC00315P59091 139 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 PSMC5P62195 406 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 TPM4P67936 248 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 EIF4EBP1Q13541 118 aaPredicted RBP2.02□□□□□ -2.09
HMGB1-201ENST00000326004 PON3Q15166 354 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 ZNF726P1Q15940 193 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 PSMD5Q16401 504 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 C18orf21Q32NC0 220 aaPredicted RBP2.02□□□□□ -2.09
HMGB1-201ENST00000326004 HES5Q5TA89 166 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 ADNP2Q6IQ32 1131 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 TEX43Q6ZNM6 134 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 FAM92BQ6ZTR7 304 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 LINC00336Q6ZUF6 198 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 SLC35D2Q76EJ3 337 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 NDUFAF7Q7L592 441 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 PID1Q7Z2X4 250 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 SNX20Q7Z614 316 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 OAFQ86UD1 273 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 RBM45Q8IUH3 476 aaKnown RBP2.02□□□□□ -2.09
HMGB1-201ENST00000326004 STPG2Q8N412 459 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 KIF2BQ8N4N8 673 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 CYB561D1Q8N8Q1 229 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 OR2L8Q8NGY9 312 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 OR51F2Q8NH61 342 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 BAALCQ8WXS3 180 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 TFGQ92734 400 aaPredicted RBP2.02□□□□□ -2.09
HMGB1-201ENST00000326004 FAM131CQ96AQ9 280 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 EEF1AKMT3Q96AZ1 226 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 CREB3L1Q96BA8 519 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 FAM3DQ96BQ1 224 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 COL21A1Q96P44 957 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 OR2A5Q96R48 311 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 KCNS3Q9BQ31 491 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 TRIM4Q9C037 500 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 MFSD1Q9H3U5 465 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 ZSCAN16Q9H4T2 348 aaPredicted RBP2.02□□□□□ -2.09
HMGB1-201ENST00000326004 CSNK1G1Q9HCP0 422 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 ISYNA1Q9NPH2 558 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 ZNF229Q9UJW7 825 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 NOSIPQ9Y314 301 aaKnown RBP2.02□□□□□ -2.09
HMGB1-201ENST00000326004 PLXNA1Q9UIW2 1896 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 LTBP2Q14767 1821 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 COL4A4P53420 1690 aaPredicted RBP2.02□□□□□ -2.09
HMGB1-201ENST00000326004 MYO18BQ8IUG5 2567 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 DNAH12Q6ZR08 3092 aa2.02□□□□□ -2.09
HMGB1-201ENST00000326004 OBSCNQ5VST9 7968 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 XIRP2A4UGR9 3374 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 DNAH14Q0VDD8 3507 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 IGHV3-74A0A0B4J1X5 117 aa2.01□□□□□ -2.09
HMGB1-201ENST00000326004 IGHV5-51A0A0C4DH38 117 aa2.01□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms