RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 SDF2Q99470 211 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 TRIP11Q15643 1979 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 RNASEK-C17orf49H0YIS7 233 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 FGF16O43320 207 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 YIF1AO95070 293 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 BTCP35070 178 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 GNB1P62873 340 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 PMP22Q01453 160 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 CATR1Q13166 79 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 NR0B2Q15466 257 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 ZNF343Q6P1L6 599 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 GLRX5Q86SX6 157 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 TMEM116Q8NCL8 245 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 KCNG3Q8TAE7 436 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 LHX4Q969G2 390 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 PINX1Q96BK5 328 aaKnown RBP5.78□□□□□ -1.48
VPS35-201ENST00000299138 MAP1LC3CQ9BXW4 147 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 PARP11Q9NR21 331 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 CCDC187A0A096LP49 1063 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 B4DEV8 164 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 C9J4A7 227 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 ISLRO14498 428 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 RNGTTO60942 597 aaKnown RBP5.77□□□□□ -1.49
VPS35-201ENST00000299138 IL2RAP01589 272 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 CD37P11049 281 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 PGFP49763 221 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 ELOBQ15370 118 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 ZNF141Q15928 474 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 TXNDC8Q6A555 127 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 STAC2Q6ZMT1 411 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 HSD17B8Q92506 261 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 NPAS1Q99742 590 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 NAA11Q9BSU3 229 aaPredicted RBP5.77□□□□□ -1.49
VPS35-201ENST00000299138 NDFIP1Q9BT67 221 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 ACTR3CQ9C0K3 210 aaPredicted RBP5.77□□□□□ -1.49
VPS35-201ENST00000299138 IFITM10A6NMD0 228 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 MFNGO00587 321 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 DUS4LO95620 317 aaKnown RBP5.77□□□□□ -1.49
VPS35-201ENST00000299138 ABOP16442 354 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 OR10J1P30954 320 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 LINC00303Q3SY05 128 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 SPANXN5Q5MJ07 72 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 SLC16A14Q7RTX9 510 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 ETFBKMTQ8IXQ9 262 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 OR9A2Q8NGT5 310 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 SP7Q8TDD2 431 aaPredicted RBP5.77□□□□□ -1.49
VPS35-201ENST00000299138 TMPRSS11DO60235 418 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 CYB5R3P00387 301 aaPredicted RBP5.77□□□□□ -1.49
VPS35-201ENST00000299138 CST4P01036 141 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 GLI4P10075 376 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 SFTPDP35247 375 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 RAB38P57729 211 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 LTB4RQ15722 352 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 SMAD2Q15796 467 aaKnown RBP5.77□□□□□ -1.49
VPS35-201ENST00000299138 PARS2Q7L3T8 475 aaKnown RBP5.77□□□□□ -1.49
VPS35-201ENST00000299138 FAM3DQ96BQ1 224 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 ADAT3Q96EY9 351 aaPredicted RBP5.77□□□□□ -1.49
VPS35-201ENST00000299138 OR5B2Q96R09 309 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 SLCO1C1Q9NYB5 712 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 CXorf65A6NEN9 183 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 ZNF732B4DXR9 585 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 TRAPPC2LH3BP13 241 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 OR4E1P0C645 316 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 NMUP48645 174 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 DLX1P56177 255 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 BCL2L2Q92843 193 aaPredicted RBP5.77□□□□□ -1.49
VPS35-201ENST00000299138 NTNG2Q96CW9 530 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 COX14Q96I36 57 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 ENKD1Q9H0I2 346 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 NOX4Q9NPH5 578 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 FKBP11Q9NYL4 201 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 TRBV5-7A0A0A0MS05 114 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 A0A1B0GTI1 187 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 A0A1B0GWA3 101 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 F5H697 171 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 SULT2B1O00204 365 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 GREM1O60565 184 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 UTS2O95399 124 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 MPC2O95563 127 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 EFEMP2O95967 443 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 RECKO95980 971 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 WNT1P04628 370 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 FUT1P19526 365 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 EN2P19622 333 aaPredicted RBP5.77□□□□□ -1.49
VPS35-201ENST00000299138 HTR1DP28221 377 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 APLNRP35414 380 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 CD200P41217 278 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 ZNF85Q03923 595 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 GRM7Q14831 915 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 CNN3Q15417 329 aaKnown RBP5.77□□□□□ -1.49
VPS35-201ENST00000299138 TMEM95Q3KNT9 176 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 ZNF660Q6AZW8 331 aaPredicted RBP5.77□□□□□ -1.49
VPS35-201ENST00000299138 ACSM6Q6P461 480 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 TMEM184AQ6ZMB5 413 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 EMG1Q92979 244 aaKnown RBP5.77□□□□□ -1.49
VPS35-201ENST00000299138 FBXO17Q96EF6 278 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 IER3IP1Q9Y5U9 82 aa5.77□□□□□ -1.49
VPS35-201ENST00000299138 A0A1W2PN81 502 aa5.76□□□□□ -1.49
VPS35-201ENST00000299138 FAM183AA6NL82 134 aa5.76□□□□□ -1.49
VPS35-201ENST00000299138 GEMIN2O14893 280 aaKnown RBP5.76□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms