RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 H0Y8X5 98 aa11.92□□□□□ -0.5
SKA3-201ENST00000298260 DEDDO75618 318 aa11.92□□□□□ -0.5
SKA3-201ENST00000298260 SCAF4O95104 1147 aaKnown RBP11.92□□□□□ -0.5
SKA3-201ENST00000298260 NUDT14O95848 222 aa11.92□□□□□ -0.5
SKA3-201ENST00000298260 ADH1CP00326 375 aa11.92□□□□□ -0.5
SKA3-201ENST00000298260 FSTP19883 344 aa11.92□□□□□ -0.5
SKA3-201ENST00000298260 CSNK2A1P68400 391 aaPredicted RBP11.92□□□□□ -0.5
SKA3-201ENST00000298260 GRASPQ7Z6J2 395 aaPredicted RBP11.92□□□□□ -0.5
SKA3-201ENST00000298260 C12orf76Q8N812 135 aaPredicted RBP11.92□□□□□ -0.5
SKA3-201ENST00000298260 ZNF321PQ8N8H1 164 aa11.92□□□□□ -0.5
SKA3-201ENST00000298260 CSNK2A3Q8NEV1 391 aa11.92□□□□□ -0.5
SKA3-201ENST00000298260 NT5CQ8TCD5 201 aa11.92□□□□□ -0.5
SKA3-201ENST00000298260 S100A13Q99584 98 aa11.92□□□□□ -0.5
SKA3-201ENST00000298260 C2orf88Q9BSF0 95 aa11.92□□□□□ -0.5
SKA3-201ENST00000298260 IGKV1D-43A0A0B4J1Z2 117 aa11.91□□□□□ -0.5
SKA3-201ENST00000298260 ZNF724A8MTY0 619 aa11.91□□□□□ -0.5
SKA3-201ENST00000298260 WBP2NLQ6ICG8 309 aa11.91□□□□□ -0.5
SKA3-201ENST00000298260 CYB561D1Q8N8Q1 229 aa11.91□□□□□ -0.5
SKA3-201ENST00000298260 GPR119Q8TDV5 335 aa11.91□□□□□ -0.5
SKA3-201ENST00000298260 DUSP15Q9H1R2 295 aaPredicted RBP11.91□□□□□ -0.5
SKA3-201ENST00000298260 Q9N2J8 555 aa11.91□□□□□ -0.5
SKA3-201ENST00000298260 F5P12259 2224 aa11.91□□□□□ -0.5
SKA3-201ENST00000298260 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.91□□□□□ -0.5
SKA3-201ENST00000298260 LOC390937A0A1W2PQ73 354 aa11.91□□□□□ -0.5
SKA3-201ENST00000298260 TNFSF12O43508 249 aa11.91□□□□□ -0.5
SKA3-201ENST00000298260 NUDT21O43809 227 aaKnown RBP11.91□□□□□ -0.5
SKA3-201ENST00000298260 MBPP02686 304 aaPredicted RBP11.91□□□□□ -0.5
SKA3-201ENST00000298260 MMP7P09237 267 aaPredicted RBP11.91□□□□□ -0.5
SKA3-201ENST00000298260 IL11P20809 199 aa11.91□□□□□ -0.5
SKA3-201ENST00000298260 C5AR1P21730 350 aa11.91□□□□□ -0.5
SKA3-201ENST00000298260 OMGP23515 440 aa11.91□□□□□ -0.5
SKA3-201ENST00000298260 KCTD18Q6PI47 426 aaPredicted RBP11.91□□□□□ -0.5
SKA3-201ENST00000298260 OR52N5Q8NH56 324 aa11.91□□□□□ -0.5
SKA3-201ENST00000298260 FLVCR1-AS1Q8TAF5 88 aa11.91□□□□□ -0.5
SKA3-201ENST00000298260 FNDC9Q8TBE3 224 aa11.91□□□□□ -0.5
SKA3-201ENST00000298260 PHPT1Q9NRX4 125 aaPredicted RBP11.91□□□□□ -0.5
SKA3-201ENST00000298260 IGLV1-36A0A0B4J1U3 117 aa11.9□□□□□ -0.5
SKA3-201ENST00000298260 LINC01553A4QN01 128 aa11.9□□□□□ -0.5
SKA3-201ENST00000298260 A8MWP6 167 aa11.9□□□□□ -0.5
SKA3-201ENST00000298260 LILRB3O75022 631 aa11.9□□□□□ -0.5
SKA3-201ENST00000298260 BGLAPP02818 100 aa11.9□□□□□ -0.5
SKA3-201ENST00000298260 RBMXP38159 391 aaKnown RBP11.9□□□□□ -0.5
SKA3-201ENST00000298260 SNU13P55769 128 aaKnown RBP11.9□□□□□ -0.5
SKA3-201ENST00000298260 RND3P61587 244 aa11.9□□□□□ -0.5
SKA3-201ENST00000298260 NUTF2P61970 127 aaKnown RBP11.9□□□□□ -0.5
SKA3-201ENST00000298260 LILRA6Q6PI73 481 aa11.9□□□□□ -0.5
SKA3-201ENST00000298260 OPN5Q6U736 354 aa11.9□□□□□ -0.5
SKA3-201ENST00000298260 COMMD2Q86X83 199 aa11.9□□□□□ -0.5
SKA3-201ENST00000298260 LANCL2Q9NS86 450 aa11.9□□□□□ -0.5
SKA3-201ENST00000298260 RP1P56715 2156 aa11.9□□□□□ -0.5
SKA3-201ENST00000298260 SHANK1Q9Y566 2161 aa11.9□□□□□ -0.5
SKA3-201ENST00000298260 MEGF11A6BM72 1044 aa11.9□□□□□ -0.5
SKA3-201ENST00000298260 CRTAPO75718 401 aaPredicted RBP11.9□□□□□ -0.5
SKA3-201ENST00000298260 FPR2P25090 351 aa11.9□□□□□ -0.5
SKA3-201ENST00000298260 ZNF93P35789 620 aaPredicted RBP11.9□□□□□ -0.5
SKA3-201ENST00000298260 RNF4P78317 190 aa11.9□□□□□ -0.5
SKA3-201ENST00000298260 TLE1Q04724 770 aa11.9□□□□□ -0.5
SKA3-201ENST00000298260 TSACCQ96A04 125 aaPredicted RBP11.9□□□□□ -0.5
SKA3-201ENST00000298260 RERGQ96A58 199 aaPredicted RBP11.9□□□□□ -0.5
SKA3-201ENST00000298260 WFIKKN1Q96NZ8 548 aa11.9□□□□□ -0.5
SKA3-201ENST00000298260 HDHD3Q9BSH5 251 aaPredicted RBP11.9□□□□□ -0.5
SKA3-201ENST00000298260 SLC25A31Q9H0C2 315 aa11.9□□□□□ -0.5
SKA3-201ENST00000298260 ZNF700Q9H0M5 742 aa11.9□□□□□ -0.5
SKA3-201ENST00000298260 ZNF701Q9NV72 531 aaPredicted RBP11.9□□□□□ -0.5
SKA3-201ENST00000298260 R4GMQ9 66 aa11.9□□□□□ -0.5
SKA3-201ENST00000298260 SMCO3A2RU48 225 aa11.89□□□□□ -0.51
SKA3-201ENST00000298260 HSD17B6O14756 317 aa11.89□□□□□ -0.51
SKA3-201ENST00000298260 SRSF10O75494 262 aaKnown RBP11.89□□□□□ -0.51
SKA3-201ENST00000298260 IL18BPO95998 194 aa11.89□□□□□ -0.51
SKA3-201ENST00000298260 MAS1LP35410 378 aa11.89□□□□□ -0.51
SKA3-201ENST00000298260 HSD11B2P80365 405 aa11.89□□□□□ -0.51
SKA3-201ENST00000298260 SHHQ15465 462 aa11.89□□□□□ -0.51
SKA3-201ENST00000298260 CLEC12BQ2HXU8 276 aa11.89□□□□□ -0.51
SKA3-201ENST00000298260 RSPO4Q2I0M5 234 aaPredicted RBP11.89□□□□□ -0.51
SKA3-201ENST00000298260 ZNF880Q6PDB4 577 aa11.89□□□□□ -0.51
SKA3-201ENST00000298260 CPEB2Q7Z5Q1 589 aaKnown RBP11.89□□□□□ -0.51
SKA3-201ENST00000298260 ZNF429Q86V71 674 aa11.89□□□□□ -0.51
SKA3-201ENST00000298260 DTWD2Q8NBA8 298 aa11.89□□□□□ -0.51
SKA3-201ENST00000298260 OR14J1Q9UGF5 321 aa11.89□□□□□ -0.51
SKA3-201ENST00000298260 SPACA6W5XKT8 324 aa11.89□□□□□ -0.51
SKA3-201ENST00000298260 FAM221AA4D161 298 aa11.89□□□□□ -0.51
SKA3-201ENST00000298260 CCDC85CA6NKD9 419 aa11.89□□□□□ -0.51
SKA3-201ENST00000298260 GAPDHP04406 335 aaKnown RBP11.89□□□□□ -0.51
SKA3-201ENST00000298260 OR5H8P0DN80 308 aa11.89□□□□□ -0.51
SKA3-201ENST00000298260 GZMBP10144 247 aa11.89□□□□□ -0.51
SKA3-201ENST00000298260 HIST1H1DP16402 221 aaKnown RBP11.89□□□□□ -0.51
SKA3-201ENST00000298260 FCARP24071 287 aa11.89□□□□□ -0.51
SKA3-201ENST00000298260 CXCR1P25024 350 aa11.89□□□□□ -0.51
SKA3-201ENST00000298260 RAB1AP62820 205 aa11.89□□□□□ -0.51
SKA3-201ENST00000298260 ROM1Q03395 351 aa11.89□□□□□ -0.51
SKA3-201ENST00000298260 C1orf140Q5VVS0 124 aa11.89□□□□□ -0.51
SKA3-201ENST00000298260 PSRC1Q6PGN9 363 aaPredicted RBP11.89□□□□□ -0.51
SKA3-201ENST00000298260 Q7L0L9 218 aa11.89□□□□□ -0.51
SKA3-201ENST00000298260 LMF2Q9BU23 707 aaKnown RBP11.89□□□□□ -0.51
SKA3-201ENST00000298260 TPSD1Q9BZJ3 242 aa11.89□□□□□ -0.51
SKA3-201ENST00000298260 ADAM19Q9H013 955 aa11.89□□□□□ -0.51
SKA3-201ENST00000298260 DEC1Q9P2X7 70 aa11.89□□□□□ -0.51
SKA3-201ENST00000298260 OSGIN2Q9Y236 505 aa11.89□□□□□ -0.51
SKA3-201ENST00000298260 SYT7O43581 403 aa11.88□□□□□ -0.51
SKA3-201ENST00000298260 SLC35E2P0CK97 266 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms