RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 A0A1B0GX30 115 aa13.73□□□□□ -0.21
SHH-201ENST00000297261 G3V3Y1 287 aa13.73□□□□□ -0.21
SHH-201ENST00000297261 HSD17B6O14756 317 aa13.73□□□□□ -0.21
SHH-201ENST00000297261 ICOSLGO75144 302 aa13.73□□□□□ -0.21
SHH-201ENST00000297261 ADRA2CP18825 462 aa13.73□□□□□ -0.21
SHH-201ENST00000297261 H2BFSP57053 126 aa13.73□□□□□ -0.21
SHH-201ENST00000297261 PRSS53Q2L4Q9 553 aa13.73□□□□□ -0.21
SHH-201ENST00000297261 MAFAQ8NHW3 353 aaPredicted RBP13.73□□□□□ -0.21
SHH-201ENST00000297261 ARV1Q9H2C2 271 aa13.73□□□□□ -0.21
SHH-201ENST00000297261 SLC17A5Q9NRA2 495 aa13.73□□□□□ -0.21
SHH-201ENST00000297261 CHRNA9Q9UGM1 479 aa13.73□□□□□ -0.21
SHH-201ENST00000297261 UNC13CQ8NB66 2214 aa13.73□□□□□ -0.21
SHH-201ENST00000297261 TRBV23-1A0A0A0MS06 115 aa13.72□□□□□ -0.21
SHH-201ENST00000297261 CENPVL1A0A0U1RR11 272 aa13.72□□□□□ -0.21
SHH-201ENST00000297261 TMEM33P57088 247 aa13.72□□□□□ -0.21
SHH-201ENST00000297261 BAXQ07812 192 aa13.72□□□□□ -0.21
SHH-201ENST00000297261 SAT2Q96F10 170 aaPredicted RBP13.72□□□□□ -0.21
SHH-201ENST00000297261 OPA3Q9H6K4 179 aa13.72□□□□□ -0.21
SHH-201ENST00000297261 PTRH2Q9Y3E5 179 aaKnown RBP13.72□□□□□ -0.21
SHH-201ENST00000297261 TMEM265A0A087WTH1 108 aa13.72□□□□□ -0.21
SHH-201ENST00000297261 HSPB2A8KAH6 182 aa13.72□□□□□ -0.21
SHH-201ENST00000297261 SEMA7AO75326 666 aa13.72□□□□□ -0.21
SHH-201ENST00000297261 RAB5AP20339 215 aa13.72□□□□□ -0.21
SHH-201ENST00000297261 ZNF133P52736 654 aaPredicted RBP13.72□□□□□ -0.21
SHH-201ENST00000297261 HSPB2Q16082 182 aa13.72□□□□□ -0.21
SHH-201ENST00000297261 ZNF100Q8IYN0 542 aa13.72□□□□□ -0.21
SHH-201ENST00000297261 POC1BQ8TC44 478 aa13.72□□□□□ -0.21
SHH-201ENST00000297261 TMEM18Q96B42 140 aa13.72□□□□□ -0.21
SHH-201ENST00000297261 ANKRD9Q96BM1 317 aaPredicted RBP13.72□□□□□ -0.21
SHH-201ENST00000297261 ARHGAP5-AS1Q96IT6 56 aa13.72□□□□□ -0.21
SHH-201ENST00000297261 MEGF10Q96KG7 1140 aa13.72□□□□□ -0.21
SHH-201ENST00000297261 ADAM19Q9H013 955 aa13.72□□□□□ -0.21
SHH-201ENST00000297261 RAB18Q9NP72 206 aa13.72□□□□□ -0.21
SHH-201ENST00000297261 MDFIC2A0A1B0GVS7 189 aa13.72□□□□□ -0.21
SHH-201ENST00000297261 TGOLN2O43493 480 aa13.72□□□□□ -0.21
SHH-201ENST00000297261 SYNGR4O95473 234 aa13.72□□□□□ -0.21
SHH-201ENST00000297261 SLC35A1P78382 337 aa13.72□□□□□ -0.21
SHH-201ENST00000297261 DUSP2Q05923 314 aa13.72□□□□□ -0.21
SHH-201ENST00000297261 C21orf62-AS1Q17RA5 79 aa13.72□□□□□ -0.21
SHH-201ENST00000297261 C19orf48Q6RUI8 117 aa13.72□□□□□ -0.21
SHH-201ENST00000297261 SHARPINQ9H0F6 387 aa13.72□□□□□ -0.21
SHH-201ENST00000297261 LHX9Q9NQ69 397 aa13.72□□□□□ -0.21
SHH-201ENST00000297261 DNAJB12Q9NXW2 375 aaKnown RBP13.72□□□□□ -0.21
SHH-201ENST00000297261 ST6GALNAC2Q9UJ37 374 aa13.72□□□□□ -0.21
SHH-201ENST00000297261 CENPFP49454 3210 aa13.72□□□□□ -0.21
SHH-201ENST00000297261 TDRD6O60522 2096 aaKnown RBP13.72□□□□□ -0.21
SHH-201ENST00000297261 H0YIG0 161 aa13.72□□□□□ -0.21
SHH-201ENST00000297261 F10P00742 488 aa13.72□□□□□ -0.21
SHH-201ENST00000297261 ICAM2P13598 275 aa13.72□□□□□ -0.21
SHH-201ENST00000297261 SLC25A1P53007 311 aa13.72□□□□□ -0.21
SHH-201ENST00000297261 RNF4P78317 190 aa13.72□□□□□ -0.21
SHH-201ENST00000297261 GGNBP1Q5YKI7 109 aa13.72□□□□□ -0.21
SHH-201ENST00000297261 ZNF439Q8NDP4 499 aa13.72□□□□□ -0.21
SHH-201ENST00000297261 SEMA6DQ8NFY4 1073 aa13.72□□□□□ -0.21
SHH-201ENST00000297261 FLRT3Q9NZU0 649 aa13.72□□□□□ -0.21
SHH-201ENST00000297261 ZDBF2Q9HCK1 2354 aa13.71□□□□□ -0.21
SHH-201ENST00000297261 NKX2-2O95096 273 aa13.71□□□□□ -0.21
SHH-201ENST00000297261 SFT2D2O95562 160 aa13.71□□□□□ -0.21
SHH-201ENST00000297261 FGF7P21781 194 aa13.71□□□□□ -0.21
SHH-201ENST00000297261 OTX2P32243 289 aa13.71□□□□□ -0.21
SHH-201ENST00000297261 NANOS3P60323 173 aaKnown RBP13.71□□□□□ -0.21
SHH-201ENST00000297261 DCDP81605 110 aaKnown RBP13.71□□□□□ -0.21
SHH-201ENST00000297261 FMODQ06828 376 aa13.71□□□□□ -0.21
SHH-201ENST00000297261 LDLRAD3Q86YD5 345 aa13.71□□□□□ -0.21
SHH-201ENST00000297261 CCNL2Q96S94 520 aaPredicted RBP13.71□□□□□ -0.21
SHH-201ENST00000297261 TNFSF18Q9UNG2 199 aa13.71□□□□□ -0.21
SHH-201ENST00000297261 TMEM184BQ9Y519 407 aaPredicted RBP13.71□□□□□ -0.21
SHH-201ENST00000297261 ICE1Q9Y2F5 2266 aa13.71□□□□□ -0.21
SHH-201ENST00000297261 NOTCH4Q99466 2003 aa13.71□□□□□ -0.21
SHH-201ENST00000297261 A0A1W2PNR3 127 aa13.71□□□□□ -0.21
SHH-201ENST00000297261 OR4C45A6NMZ5 311 aa13.71□□□□□ -0.21
SHH-201ENST00000297261 EIF4E2O60573 245 aaKnown RBP13.71□□□□□ -0.21
SHH-201ENST00000297261 HOXB9P17482 250 aaPredicted RBP13.71□□□□□ -0.21
SHH-201ENST00000297261 TLE1Q04724 770 aa13.71□□□□□ -0.21
SHH-201ENST00000297261 SRSF5Q13243 272 aaKnown RBP13.71□□□□□ -0.21
SHH-201ENST00000297261 RAB31Q13636 194 aa13.71□□□□□ -0.21
SHH-201ENST00000297261 ZNF684Q5T5D7 378 aa13.71□□□□□ -0.21
SHH-201ENST00000297261 ZNF787Q6DD87 383 aa13.71□□□□□ -0.21
SHH-201ENST00000297261 ZNF66Q6ZN08 573 aa13.71□□□□□ -0.21
SHH-201ENST00000297261 SLC16A14Q7RTX9 510 aa13.71□□□□□ -0.21
SHH-201ENST00000297261 ZAR1Q86SH2 424 aa13.71□□□□□ -0.21
SHH-201ENST00000297261 C17orf78Q8N4C9 275 aa13.71□□□□□ -0.21
SHH-201ENST00000297261 NPEPL1Q8NDH3 523 aa13.71□□□□□ -0.21
SHH-201ENST00000297261 AGBL5Q8NDL9 886 aa13.71□□□□□ -0.21
SHH-201ENST00000297261 GJC3Q8NFK1 279 aa13.71□□□□□ -0.21
SHH-201ENST00000297261 OR52N4Q8NGI2 321 aa13.71□□□□□ -0.21
SHH-201ENST00000297261 ZNF426Q9BUY5 554 aa13.71□□□□□ -0.21
SHH-201ENST00000297261 GPR37O15354 613 aa13.71□□□□□ -0.22
SHH-201ENST00000297261 ZGLP1P0C6A0 271 aa13.71□□□□□ -0.22
SHH-201ENST00000297261 PTPRZ1P23471 2315 aaPredicted RBP13.71□□□□□ -0.22
SHH-201ENST00000297261 ZDHHC19Q8WVZ1 309 aaPredicted RBP13.71□□□□□ -0.22
SHH-201ENST00000297261 ZNF764Q96H86 408 aaPredicted RBP13.71□□□□□ -0.22
SHH-201ENST00000297261 POM121Q96HA1 1249 aa13.71□□□□□ -0.22
SHH-201ENST00000297261 ANGPTL7O43827 346 aa13.7□□□□□ -0.22
SHH-201ENST00000297261 P04436 131 aa13.7□□□□□ -0.22
SHH-201ENST00000297261 PPICP45877 212 aa13.7□□□□□ -0.22
SHH-201ENST00000297261 GSK3AP49840 483 aa13.7□□□□□ -0.22
SHH-201ENST00000297261 SPANXN5Q5MJ07 72 aa13.7□□□□□ -0.22
SHH-201ENST00000297261 CBLN3Q6UW01 205 aa13.7□□□□□ -0.22
SHH-201ENST00000297261 ZNF485Q8NCK3 441 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms