RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 ARRDC1Q8N5I2 433 aa16.5■□□□□ 0.23
PCDH1-201ENST00000287008 RPEQ96AT9 228 aa16.5■□□□□ 0.23
PCDH1-201ENST00000287008 BTF3L4Q96K17 158 aa16.5■□□□□ 0.23
PCDH1-201ENST00000287008 C10orf90Q96M02 699 aa16.5■□□□□ 0.23
PCDH1-201ENST00000287008 PLEKHB1Q9UF11 243 aaPredicted RBP16.5■□□□□ 0.23
PCDH1-201ENST00000287008 M0R1X1 148 aa16.5■□□□□ 0.23
PCDH1-201ENST00000287008 ZNF354AO60765 605 aaPredicted RBP16.5■□□□□ 0.23
PCDH1-201ENST00000287008 GP1BAP07359 652 aa16.5■□□□□ 0.23
PCDH1-201ENST00000287008 CT45A10P0DMU9 189 aa16.5■□□□□ 0.23
PCDH1-201ENST00000287008 ZBTB25P24278 435 aa16.5■□□□□ 0.23
PCDH1-201ENST00000287008 TAS2R45P59539 299 aa16.5■□□□□ 0.23
PCDH1-201ENST00000287008 SSBP1Q04837 148 aaKnown RBP16.5■□□□□ 0.23
PCDH1-201ENST00000287008 SKP2Q13309 424 aa16.5■□□□□ 0.23
PCDH1-201ENST00000287008 CD300LDQ6UXZ3 194 aa16.5■□□□□ 0.23
PCDH1-201ENST00000287008 TUSC5Q8IXB3 177 aa16.5■□□□□ 0.23
PCDH1-201ENST00000287008 LRRC29Q8WV35 223 aa16.5■□□□□ 0.23
PCDH1-201ENST00000287008 CMBLQ96DG6 245 aa16.5■□□□□ 0.23
PCDH1-201ENST00000287008 UQCC2Q9BRT2 126 aa16.5■□□□□ 0.23
PCDH1-201ENST00000287008 TAAR3PQ9P1P4 343 aa16.5■□□□□ 0.23
PCDH1-201ENST00000287008 COL5A3P25940 1745 aaPredicted RBP16.5■□□□□ 0.23
PCDH1-201ENST00000287008 DOPEY2Q9Y3R5 2298 aa16.49■□□□□ 0.23
PCDH1-201ENST00000287008 LIPT2A6NK58 231 aa16.49■□□□□ 0.23
PCDH1-201ENST00000287008 GIPP09681 153 aaPredicted RBP16.49■□□□□ 0.23
PCDH1-201ENST00000287008 MGST1P10620 155 aaKnown RBP16.49■□□□□ 0.23
PCDH1-201ENST00000287008 SLC25A35Q3KQZ1 300 aa16.49■□□□□ 0.23
PCDH1-201ENST00000287008 RFESDQ8TAC1 157 aa16.49■□□□□ 0.23
PCDH1-201ENST00000287008 RPS10-NUDT3A0A1W2PQS6 291 aa16.49■□□□□ 0.23
PCDH1-201ENST00000287008 ZFP92A6NM28 416 aa16.49■□□□□ 0.23
PCDH1-201ENST00000287008 GPANK1O95872 356 aa16.49■□□□□ 0.23
PCDH1-201ENST00000287008 CYC1P08574 325 aa16.49■□□□□ 0.23
PCDH1-201ENST00000287008 PSMB6P28072 239 aa16.49■□□□□ 0.23
PCDH1-201ENST00000287008 RPS10P46783 165 aaKnown RBP16.49■□□□□ 0.23
PCDH1-201ENST00000287008 SNTB1Q13884 538 aaKnown RBP16.49■□□□□ 0.23
PCDH1-201ENST00000287008 FAAP20Q6NZ36 180 aa16.49■□□□□ 0.23
PCDH1-201ENST00000287008 GNPNAT1Q96EK6 184 aaPredicted RBP16.49■□□□□ 0.23
PCDH1-201ENST00000287008 SPTBN1Q01082 2364 aaKnown RBP16.49■□□□□ 0.23
PCDH1-201ENST00000287008 MARF1Q9Y4F3 1742 aaKnown RBP16.49■□□□□ 0.23
PCDH1-201ENST00000287008 SCN4AP35499 1836 aa16.49■□□□□ 0.23
PCDH1-201ENST00000287008 ZNF705FA8MVS1 300 aaPredicted RBP16.49■□□□□ 0.23
PCDH1-201ENST00000287008 HRKO00198 91 aa16.49■□□□□ 0.23
PCDH1-201ENST00000287008 ZNF705DP0CH99 300 aaPredicted RBP16.49■□□□□ 0.23
PCDH1-201ENST00000287008 ZNF705BP0CI00 300 aaPredicted RBP16.49■□□□□ 0.23
PCDH1-201ENST00000287008 CCL2P13500 99 aa16.49■□□□□ 0.23
PCDH1-201ENST00000287008 DTYMKP23919 212 aa16.49■□□□□ 0.23
PCDH1-201ENST00000287008 TINAGL1Q9GZM7 467 aaPredicted RBP16.49■□□□□ 0.23
PCDH1-201ENST00000287008 ADAMTSL1Q8N6G6 1762 aa16.49■□□□□ 0.23
PCDH1-201ENST00000287008 NUPL2O15504 423 aaKnown RBP16.49■□□□□ 0.23
PCDH1-201ENST00000287008 ATG4DQ86TL0 474 aaPredicted RBP16.49■□□□□ 0.23
PCDH1-201ENST00000287008 TERB2Q8NHR7 220 aa16.49■□□□□ 0.23
PCDH1-201ENST00000287008 LIN37Q96GY3 246 aaPredicted RBP16.49■□□□□ 0.23
PCDH1-201ENST00000287008 TAF9BQ9HBM6 251 aa16.49■□□□□ 0.23
PCDH1-201ENST00000287008 PCYT1BQ9Y5K3 369 aaPredicted RBP16.49■□□□□ 0.23
PCDH1-201ENST00000287008 CSAG2Q9Y5P2 127 aa16.49■□□□□ 0.23
PCDH1-201ENST00000287008 CDC42EP2O14613 210 aa16.48■□□□□ 0.23
PCDH1-201ENST00000287008 JTBO76095 146 aa16.48■□□□□ 0.23
PCDH1-201ENST00000287008 DCTDP32321 178 aa16.48■□□□□ 0.23
PCDH1-201ENST00000287008 PTGFRP43088 359 aa16.48■□□□□ 0.23
PCDH1-201ENST00000287008 UBE2G1P62253 170 aa16.48■□□□□ 0.23
PCDH1-201ENST00000287008 SSX2Q16385 188 aa16.48■□□□□ 0.23
PCDH1-201ENST00000287008 STUMQ69YW2 141 aa16.48■□□□□ 0.23
PCDH1-201ENST00000287008 C17orf107Q6ZR85 190 aa16.48■□□□□ 0.23
PCDH1-201ENST00000287008 UBALD1Q8TB05 177 aa16.48■□□□□ 0.23
PCDH1-201ENST00000287008 PRDM6Q9NQX0 595 aa16.48■□□□□ 0.23
PCDH1-201ENST00000287008 MPC1Q9Y5U8 109 aa16.48■□□□□ 0.23
PCDH1-201ENST00000287008 NCBP2LA6PVI3 153 aaKnown RBP16.48■□□□□ 0.23
PCDH1-201ENST00000287008 HYAL3O43820 417 aaPredicted RBP16.48■□□□□ 0.23
PCDH1-201ENST00000287008 GFRA3O60609 400 aa16.48■□□□□ 0.23
PCDH1-201ENST00000287008 SP1P08047 785 aa16.48■□□□□ 0.23
PCDH1-201ENST00000287008 H2AFB1P0C5Y9 115 aa16.48■□□□□ 0.23
PCDH1-201ENST00000287008 BHLHA15Q7RTS1 189 aaPredicted RBP16.48■□□□□ 0.23
PCDH1-201ENST00000287008 OR2M7Q8NG81 312 aa16.48■□□□□ 0.23
PCDH1-201ENST00000287008 SMIM4Q8WVI0 70 aa16.48■□□□□ 0.23
PCDH1-201ENST00000287008 ASB5Q8WWX0 329 aa16.48■□□□□ 0.23
PCDH1-201ENST00000287008 SHANK3Q9BYB0 1731 aa16.48■□□□□ 0.23
PCDH1-201ENST00000287008 A0A1B0GVG6 124 aa16.48■□□□□ 0.23
PCDH1-201ENST00000287008 GPR31O00270 319 aa16.48■□□□□ 0.23
PCDH1-201ENST00000287008 F2RP25116 425 aa16.48■□□□□ 0.23
PCDH1-201ENST00000287008 TGFBR1P36897 503 aa16.48■□□□□ 0.23
PCDH1-201ENST00000287008 PURGQ9UJV8 347 aaKnown RBP16.48■□□□□ 0.23
PCDH1-201ENST00000287008 FCARP24071 287 aa16.47■□□□□ 0.23
PCDH1-201ENST00000287008 SRP14P37108 136 aaKnown RBP16.47■□□□□ 0.23
PCDH1-201ENST00000287008 HMGN3Q15651 99 aa16.47■□□□□ 0.23
PCDH1-201ENST00000287008 CDONQ4KMG0 1287 aa16.47■□□□□ 0.23
PCDH1-201ENST00000287008 LSMEM1Q8N8F7 131 aa16.47■□□□□ 0.23
PCDH1-201ENST00000287008 LFNGQ8NES3 379 aa16.47■□□□□ 0.23
PCDH1-201ENST00000287008 NMES1Q9C002 83 aa16.47■□□□□ 0.23
PCDH1-201ENST00000287008 SAV1Q9H4B6 383 aaPredicted RBP16.47■□□□□ 0.23
PCDH1-201ENST00000287008 hADV38S2A0JD32 116 aa16.47■□□□□ 0.23
PCDH1-201ENST00000287008 C3orf80F5H4A9 247 aa16.47■□□□□ 0.23
PCDH1-201ENST00000287008 ADAM20O43506 726 aa16.47■□□□□ 0.23
PCDH1-201ENST00000287008 OR2W3Q7Z3T1 314 aa16.47■□□□□ 0.23
PCDH1-201ENST00000287008 TNS1Q9HBL0 1735 aaKnown RBP16.47■□□□□ 0.23
PCDH1-201ENST00000287008 SSSCA1O60232 199 aa16.47■□□□□ 0.23
PCDH1-201ENST00000287008 SP9P0CG40 484 aa16.47■□□□□ 0.23
PCDH1-201ENST00000287008 TIAL1Q01085 375 aaKnown RBP eCLIP16.47■□□□□ 0.23
PCDH1-201ENST00000287008 CREB3L2Q70SY1 520 aa16.47■□□□□ 0.23
PCDH1-201ENST00000287008 SLC22A18ASQ8N1D0 253 aa16.47■□□□□ 0.23
PCDH1-201ENST00000287008 C17orf50Q8WW18 174 aa16.47■□□□□ 0.23
PCDH1-201ENST00000287008 YIPF5Q969M3 257 aa16.47■□□□□ 0.23
PCDH1-201ENST00000287008 YIPF6Q96EC8 236 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms