RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 MELTFP08582 738 aa13.33□□□□□ -0.28
SF3B4-201ENST00000271628 GTF2F2P13984 249 aa13.33□□□□□ -0.28
SF3B4-201ENST00000271628 ARR3P36575 388 aa13.33□□□□□ -0.28
SF3B4-201ENST00000271628 MPPED2Q15777 294 aa13.33□□□□□ -0.28
SF3B4-201ENST00000271628 AANATQ16613 207 aa13.33□□□□□ -0.28
SF3B4-201ENST00000271628 P4HA3Q7Z4N8 544 aa13.33□□□□□ -0.28
SF3B4-201ENST00000271628 DPPA2Q7Z7J5 298 aa13.33□□□□□ -0.28
SF3B4-201ENST00000271628 LRRC20Q8TCA0 184 aa13.33□□□□□ -0.28
SF3B4-201ENST00000271628 SEH1LQ96EE3 360 aa13.33□□□□□ -0.28
SF3B4-201ENST00000271628 GAL3ST1Q99999 423 aa13.33□□□□□ -0.28
SF3B4-201ENST00000271628 C1QTNF5Q9BXJ0 243 aa13.33□□□□□ -0.28
SF3B4-201ENST00000271628 OPN4Q9UHM6 478 aa13.33□□□□□ -0.28
SF3B4-201ENST00000271628 AQP7O14520 342 aa13.32□□□□□ -0.28
SF3B4-201ENST00000271628 XRCC2O43543 280 aa13.32□□□□□ -0.28
SF3B4-201ENST00000271628 VSIG10L2P0DP72 767 aa13.32□□□□□ -0.28
SF3B4-201ENST00000271628 AGTR1P30556 359 aa13.32□□□□□ -0.28
SF3B4-201ENST00000271628 SEC61A1P61619 476 aaKnown RBP13.32□□□□□ -0.28
SF3B4-201ENST00000271628 HGFACQ04756 655 aa13.32□□□□□ -0.28
SF3B4-201ENST00000271628 FBXW9Q5XUX1 488 aa13.32□□□□□ -0.28
SF3B4-201ENST00000271628 ACBD4Q8NC06 268 aa13.32□□□□□ -0.28
SF3B4-201ENST00000271628 SPSB1Q96BD6 273 aa13.32□□□□□ -0.28
SF3B4-201ENST00000271628 CST11Q9H112 138 aa13.32□□□□□ -0.28
SF3B4-201ENST00000271628 KCNN3Q9UGI6 736 aa13.32□□□□□ -0.28
SF3B4-201ENST00000271628 MUC6Q6W4X9 2439 aa13.32□□□□□ -0.28
SF3B4-201ENST00000271628 LOC400499M0QZD8 3231 aa13.32□□□□□ -0.28
SF3B4-201ENST00000271628 A0A096LPE4 126 aa13.32□□□□□ -0.28
SF3B4-201ENST00000271628 A0A1W2PPZ6 126 aa13.32□□□□□ -0.28
SF3B4-201ENST00000271628 RLN1P04808 185 aa13.32□□□□□ -0.28
SF3B4-201ENST00000271628 MPGP29372 298 aa13.32□□□□□ -0.28
SF3B4-201ENST00000271628 S100A11P31949 105 aa13.32□□□□□ -0.28
SF3B4-201ENST00000271628 PTGFRP43088 359 aa13.32□□□□□ -0.28
SF3B4-201ENST00000271628 OR3A4PP47883 348 aa13.32□□□□□ -0.28
SF3B4-201ENST00000271628 TAS2R19P59542 299 aa13.32□□□□□ -0.28
SF3B4-201ENST00000271628 GMFBP60983 142 aa13.32□□□□□ -0.28
SF3B4-201ENST00000271628 GUCA2AQ02747 115 aa13.32□□□□□ -0.28
SF3B4-201ENST00000271628 MOGAT2Q3SYC2 334 aa13.32□□□□□ -0.28
SF3B4-201ENST00000271628 ZNF260Q3ZCT1 412 aa13.32□□□□□ -0.28
SF3B4-201ENST00000271628 C9orf135Q5VTT2 229 aa13.32□□□□□ -0.28
SF3B4-201ENST00000271628 STEAP1BQ6NZ63 245 aa13.32□□□□□ -0.28
SF3B4-201ENST00000271628 IGFL3Q6UXB1 125 aa13.32□□□□□ -0.28
SF3B4-201ENST00000271628 CPEB3Q8NE35 698 aaKnown RBP13.32□□□□□ -0.28
SF3B4-201ENST00000271628 OR2AK2Q8NG84 335 aa13.32□□□□□ -0.28
SF3B4-201ENST00000271628 OR52B4Q8NGK2 314 aa13.32□□□□□ -0.28
SF3B4-201ENST00000271628 OR2AE1Q8NHA4 323 aa13.32□□□□□ -0.28
SF3B4-201ENST00000271628 AQP3Q92482 292 aa13.32□□□□□ -0.28
SF3B4-201ENST00000271628 SARAFQ96BY9 339 aa13.32□□□□□ -0.28
SF3B4-201ENST00000271628 S100A13Q99584 98 aa13.32□□□□□ -0.28
SF3B4-201ENST00000271628 URM1Q9BTM9 101 aaKnown RBP13.32□□□□□ -0.28
SF3B4-201ENST00000271628 NARFLQ9H6Q4 476 aa13.32□□□□□ -0.28
SF3B4-201ENST00000271628 EFSO43281 561 aa13.31□□□□□ -0.28
SF3B4-201ENST00000271628 CNN3Q15417 329 aaKnown RBP13.31□□□□□ -0.28
SF3B4-201ENST00000271628 TMEM229BQ8NBD8 167 aa13.31□□□□□ -0.28
SF3B4-201ENST00000271628 OR51S1Q8NGJ8 323 aa13.31□□□□□ -0.28
SF3B4-201ENST00000271628 OR10R2Q8NGX6 335 aa13.31□□□□□ -0.28
SF3B4-201ENST00000271628 F5H5P2 479 aa13.3□□□□□ -0.28
SF3B4-201ENST00000271628 CDC14BO60729 498 aa13.3□□□□□ -0.28
SF3B4-201ENST00000271628 SS18L1O75177 396 aaPredicted RBP13.3□□□□□ -0.28
SF3B4-201ENST00000271628 CD3DP04234 171 aa13.3□□□□□ -0.28
SF3B4-201ENST00000271628 NAT2P11245 290 aa13.3□□□□□ -0.28
SF3B4-201ENST00000271628 PRKACBP22694 351 aa13.3□□□□□ -0.28
SF3B4-201ENST00000271628 RAB1AP62820 205 aa13.3□□□□□ -0.28
SF3B4-201ENST00000271628 PLP2Q04941 152 aa13.3□□□□□ -0.28
SF3B4-201ENST00000271628 CDNFQ49AH0 187 aa13.3□□□□□ -0.28
SF3B4-201ENST00000271628 COLCA1Q6ZS62 124 aa13.3□□□□□ -0.28
SF3B4-201ENST00000271628 CHST4Q8NCG5 386 aa13.3□□□□□ -0.28
SF3B4-201ENST00000271628 OR4D10Q8NGI6 311 aa13.3□□□□□ -0.28
SF3B4-201ENST00000271628 CCDC107Q8WV48 283 aa13.3□□□□□ -0.28
SF3B4-201ENST00000271628 SPSB4Q96A44 273 aa13.3□□□□□ -0.28
SF3B4-201ENST00000271628 C1orf147Q96MC9 270 aaPredicted RBP13.3□□□□□ -0.28
SF3B4-201ENST00000271628 SLC25A21Q9BQT8 299 aaPredicted RBP13.3□□□□□ -0.28
SF3B4-201ENST00000271628 TMEM59Q9BXS4 323 aa13.3□□□□□ -0.28
SF3B4-201ENST00000271628 LPAR5Q9H1C0 372 aa13.3□□□□□ -0.28
SF3B4-201ENST00000271628 C12orf49Q9H741 205 aa13.3□□□□□ -0.28
SF3B4-201ENST00000271628 MED9Q9NWA0 146 aa13.3□□□□□ -0.28
SF3B4-201ENST00000271628 CFAP47Q6ZTR5 3102 aa13.3□□□□□ -0.28
SF3B4-201ENST00000271628 KLK10O43240 276 aa13.3□□□□□ -0.28
SF3B4-201ENST00000271628 MPIG6BO95866 241 aa13.3□□□□□ -0.28
SF3B4-201ENST00000271628 CYB5AP00167 134 aa13.3□□□□□ -0.28
SF3B4-201ENST00000271628 HLA-HP01893 362 aa13.3□□□□□ -0.28
SF3B4-201ENST00000271628 CD79AP11912 226 aa13.3□□□□□ -0.28
SF3B4-201ENST00000271628 ACKR3P25106 362 aa13.3□□□□□ -0.28
SF3B4-201ENST00000271628 CALCRP30988 508 aa13.3□□□□□ -0.28
SF3B4-201ENST00000271628 OR3A2P47893 321 aa13.3□□□□□ -0.28
SF3B4-201ENST00000271628 FOXG1P55316 489 aaPredicted RBP13.3□□□□□ -0.28
SF3B4-201ENST00000271628 H2BFSP57053 126 aa13.3□□□□□ -0.28
SF3B4-201ENST00000271628 FAM3AP98173 230 aa13.3□□□□□ -0.28
SF3B4-201ENST00000271628 ZNF169Q14929 603 aaPredicted RBP13.3□□□□□ -0.28
SF3B4-201ENST00000271628 CLVS2Q5SYC1 327 aa13.3□□□□□ -0.28
SF3B4-201ENST00000271628 RNF144BQ7Z419 303 aa13.3□□□□□ -0.28
SF3B4-201ENST00000271628 MUC20Q8N307 709 aaPredicted RBP13.3□□□□□ -0.28
SF3B4-201ENST00000271628 RBPMSQ93062 196 aaKnown RBP13.3□□□□□ -0.28
SF3B4-201ENST00000271628 TECTBQ96PL2 329 aa13.3□□□□□ -0.28
SF3B4-201ENST00000271628 ZMAT3Q9HA38 289 aaKnown RBP13.3□□□□□ -0.28
SF3B4-201ENST00000271628 RDH8Q9NYR8 311 aa13.3□□□□□ -0.28
SF3B4-201ENST00000271628 CLCF1Q9UBD9 225 aa13.3□□□□□ -0.28
SF3B4-201ENST00000271628 PRSS50Q9UI38 385 aa13.3□□□□□ -0.28
SF3B4-201ENST00000271628 FREM1Q5H8C1 2179 aa13.3□□□□□ -0.28
SF3B4-201ENST00000271628 hCG_38984A0A1B0GV85 526 aa13.29□□□□□ -0.28
SF3B4-201ENST00000271628 MEIS3P1A6NDR6 274 aa13.29□□□□□ -0.28
SF3B4-201ENST00000271628 TMEM235A6NFC5 223 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms