RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 TMEM59Q9BXS4 323 aa14.22□□□□□ -0.13
USP4-201ENST00000265560 HRASLSQ9HDD0 168 aa14.22□□□□□ -0.13
USP4-201ENST00000265560 PLSCR4Q9NRQ2 329 aa14.22□□□□□ -0.13
USP4-201ENST00000265560 TBCCD1Q9NVR7 557 aa14.22□□□□□ -0.13
USP4-201ENST00000265560 MBD3L4A6NDZ8 208 aaPredicted RBP14.22□□□□□ -0.13
USP4-201ENST00000265560 MBD3L3A6NE82 208 aaPredicted RBP14.22□□□□□ -0.13
USP4-201ENST00000265560 MBD3L5A6NJ08 208 aaPredicted RBP14.22□□□□□ -0.13
USP4-201ENST00000265560 RBBP9O75884 186 aa14.22□□□□□ -0.13
USP4-201ENST00000265560 SLC6A1P30531 599 aa14.22□□□□□ -0.13
USP4-201ENST00000265560 ID4P47928 161 aa14.22□□□□□ -0.13
USP4-201ENST00000265560 CLVS2Q5SYC1 327 aa14.22□□□□□ -0.13
USP4-201ENST00000265560 BAIAP2L2Q6UXY1 529 aa14.22□□□□□ -0.13
USP4-201ENST00000265560 MBD3L2Q8NHZ7 208 aaPredicted RBP14.22□□□□□ -0.13
USP4-201ENST00000265560 SEH1LQ96EE3 360 aa14.22□□□□□ -0.13
USP4-201ENST00000265560 REPIN1Q9BWE0 567 aaKnown RBP14.22□□□□□ -0.13
USP4-201ENST00000265560 OR2J1Q9GZK6 312 aa14.22□□□□□ -0.13
USP4-201ENST00000265560 ARID1AO14497 2285 aa14.22□□□□□ -0.13
USP4-201ENST00000265560 METTL21EPA6NDL7 271 aa14.21□□□□□ -0.13
USP4-201ENST00000265560 TMEM14DPA8MWL7 114 aa14.21□□□□□ -0.13
USP4-201ENST00000265560 CTDSPLO15194 276 aa14.21□□□□□ -0.13
USP4-201ENST00000265560 XRCC2O43543 280 aa14.21□□□□□ -0.13
USP4-201ENST00000265560 GSTZ1O43708 216 aaPredicted RBP14.21□□□□□ -0.13
USP4-201ENST00000265560 HTR3BO95264 441 aa14.21□□□□□ -0.13
USP4-201ENST00000265560 CGAP01215 116 aa14.21□□□□□ -0.13
USP4-201ENST00000265560 ZNF14P17017 642 aaPredicted RBP14.21□□□□□ -0.13
USP4-201ENST00000265560 MALLQ13021 153 aa14.21□□□□□ -0.13
USP4-201ENST00000265560 OR8B8Q15620 311 aa14.21□□□□□ -0.13
USP4-201ENST00000265560 TATDN3Q17R31 274 aa14.21□□□□□ -0.13
USP4-201ENST00000265560 ZNF324BQ6AW86 544 aaPredicted RBP14.21□□□□□ -0.13
USP4-201ENST00000265560 RPUSD3Q6P087 351 aaKnown RBP14.21□□□□□ -0.13
USP4-201ENST00000265560 WDR31Q8NA23 367 aa14.21□□□□□ -0.13
USP4-201ENST00000265560 OR51T1Q8NGJ9 327 aa14.21□□□□□ -0.13
USP4-201ENST00000265560 NANOS1Q8WY41 292 aaKnown RBP14.21□□□□□ -0.13
USP4-201ENST00000265560 AKAP1Q92667 903 aaKnown RBP eCLIP14.21□□□□□ -0.13
USP4-201ENST00000265560 CD3DP04234 171 aa14.21□□□□□ -0.13
USP4-201ENST00000265560 GABRR1P24046 479 aa14.21□□□□□ -0.13
USP4-201ENST00000265560 HOXC12P31275 282 aa14.21□□□□□ -0.13
USP4-201ENST00000265560 PTGER4P35408 488 aa14.21□□□□□ -0.13
USP4-201ENST00000265560 GPM6AP51674 278 aa14.21□□□□□ -0.13
USP4-201ENST00000265560 TDGF1P3P51864 188 aa14.21□□□□□ -0.13
USP4-201ENST00000265560 PLAC9Q5JTB6 97 aa14.21□□□□□ -0.13
USP4-201ENST00000265560 OR52W1Q6IF63 320 aa14.21□□□□□ -0.13
USP4-201ENST00000265560 C22orf34Q6ZV56 151 aa14.21□□□□□ -0.13
USP4-201ENST00000265560 FGF23Q9GZV9 251 aaPredicted RBP14.21□□□□□ -0.13
USP4-201ENST00000265560 M0QYG6 137 aa14.21□□□□□ -0.14
USP4-201ENST00000265560 GTF2F2P13984 249 aa14.21□□□□□ -0.14
USP4-201ENST00000265560 MGMTP16455 207 aa14.21□□□□□ -0.14
USP4-201ENST00000265560 SELEP16581 610 aa14.21□□□□□ -0.14
USP4-201ENST00000265560 TMEM50BP56557 158 aa14.21□□□□□ -0.14
USP4-201ENST00000265560 PLA1AQ53H76 456 aa14.21□□□□□ -0.14
USP4-201ENST00000265560 FAM57AQ8TBR7 257 aa14.21□□□□□ -0.14
USP4-201ENST00000265560 WBP1Q96G27 269 aa14.21□□□□□ -0.14
USP4-201ENST00000265560 ARHGAP5-AS1Q96IT6 56 aa14.21□□□□□ -0.14
USP4-201ENST00000265560 ZNF816-ZNF321PA0A0X1KG74 233 aa14.2□□□□□ -0.14
USP4-201ENST00000265560 CENPXA8MT69 81 aa14.2□□□□□ -0.14
USP4-201ENST00000265560 RANBP1P43487 201 aa14.2□□□□□ -0.14
USP4-201ENST00000265560 RBP2P50120 134 aa14.2□□□□□ -0.14
USP4-201ENST00000265560 SCAND1P57086 179 aa14.2□□□□□ -0.14
USP4-201ENST00000265560 FAM27E3Q08E93 113 aa14.2□□□□□ -0.14
USP4-201ENST00000265560 PRDX4Q13162 271 aa14.2□□□□□ -0.14
USP4-201ENST00000265560 KRTCAP3Q53RY4 240 aa14.2□□□□□ -0.14
USP4-201ENST00000265560 OR56B4Q8NH76 319 aa14.2□□□□□ -0.14
USP4-201ENST00000265560 MAFIPQ8WZ33 124 aa14.2□□□□□ -0.14
USP4-201ENST00000265560 CFAP46Q8IYW2 2715 aa14.2□□□□□ -0.14
USP4-201ENST00000265560 IGKV1-12A0A0C4DH73 117 aa14.2□□□□□ -0.14
USP4-201ENST00000265560 INMT-MINDY4F8WBC2 141 aa14.2□□□□□ -0.14
USP4-201ENST00000265560 IGKV1D-12P01611 117 aa14.2□□□□□ -0.14
USP4-201ENST00000265560 GMFBP60983 142 aa14.2□□□□□ -0.14
USP4-201ENST00000265560 ZNF554Q86TJ5 538 aa14.2□□□□□ -0.14
USP4-201ENST00000265560 KCNK7Q9Y2U2 307 aa14.2□□□□□ -0.14
USP4-201ENST00000265560 CD300LBA8K4G0 201 aa14.19□□□□□ -0.14
USP4-201ENST00000265560 H7C417 338 aa14.19□□□□□ -0.14
USP4-201ENST00000265560 TCRBP04435 133 aa14.19□□□□□ -0.14
USP4-201ENST00000265560 SFTPBP07988 381 aa14.19□□□□□ -0.14
USP4-201ENST00000265560 GLI4P10075 376 aa14.19□□□□□ -0.14
USP4-201ENST00000265560 CA6P23280 308 aa14.19□□□□□ -0.14
USP4-201ENST00000265560 TAF9Q16594 264 aa14.19□□□□□ -0.14
USP4-201ENST00000265560 NKPD1Q17RQ9 610 aa14.19□□□□□ -0.14
USP4-201ENST00000265560 TBC1D28Q2M2D7 210 aa14.19□□□□□ -0.14
USP4-201ENST00000265560 NKAPLQ5M9Q1 402 aa14.19□□□□□ -0.14
USP4-201ENST00000265560 FJX1Q86VR8 437 aa14.19□□□□□ -0.14
USP4-201ENST00000265560 DUSP18Q8NEJ0 188 aa14.19□□□□□ -0.14
USP4-201ENST00000265560 KCNG3Q8TAE7 436 aa14.19□□□□□ -0.14
USP4-201ENST00000265560 SPSB4Q96A44 273 aa14.19□□□□□ -0.14
USP4-201ENST00000265560 DACT3Q96B18 629 aaPredicted RBP14.19□□□□□ -0.14
USP4-201ENST00000265560 OR10A4Q9H209 315 aa14.19□□□□□ -0.14
USP4-201ENST00000265560 CDH20Q9HBT6 801 aa14.19□□□□□ -0.14
USP4-201ENST00000265560 MTFP1Q9UDX5 166 aa14.19□□□□□ -0.14
USP4-201ENST00000265560 RBMX2Q9Y388 322 aaKnown RBP14.19□□□□□ -0.14
USP4-201ENST00000265560 ANKRD20A5PA0PJZ0 165 aa14.19□□□□□ -0.14
USP4-201ENST00000265560 TMEM127O75204 238 aa14.19□□□□□ -0.14
USP4-201ENST00000265560 NPBWR2P48146 333 aa14.19□□□□□ -0.14
USP4-201ENST00000265560 Q6ZSR3 168 aa14.19□□□□□ -0.14
USP4-201ENST00000265560 OR10R2Q8NGX6 335 aa14.19□□□□□ -0.14
USP4-201ENST00000265560 HS3ST6Q96QI5 342 aa14.19□□□□□ -0.14
USP4-201ENST00000265560 RGCCQ9H4X1 137 aa14.19□□□□□ -0.14
USP4-201ENST00000265560 KCNN3Q9UGI6 736 aa14.19□□□□□ -0.14
USP4-201ENST00000265560 ALG5Q9Y673 324 aa14.19□□□□□ -0.14
USP4-201ENST00000265560 PRRG2O14669 202 aa14.19□□□□□ -0.14
USP4-201ENST00000265560 RSU1Q15404 277 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms