RNA–Protein interactions for RNA: ENST00000254667.7

PTPRE-201, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRE, Length 5,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-201ENST00000254667 FAM219BQ5XKK7 198 aa16.92■□□□□ 0.3
PTPRE-201ENST00000254667 ZNF774Q6NX45 483 aa16.92■□□□□ 0.3
PTPRE-201ENST00000254667 BAP18Q8IXM2 172 aa16.92■□□□□ 0.3
PTPRE-201ENST00000254667 PTGFRP43088 359 aa16.92■□□□□ 0.3
PTPRE-201ENST00000254667 TMED6Q8WW62 240 aa16.92■□□□□ 0.3
PTPRE-201ENST00000254667 CLDN23Q96B33 292 aa16.92■□□□□ 0.3
PTPRE-201ENST00000254667 PINX1Q96BK5 328 aaKnown RBP16.92■□□□□ 0.3
PTPRE-201ENST00000254667 RYDENQ9NUL5 291 aaKnown RBP16.92■□□□□ 0.3
PTPRE-201ENST00000254667 KCNJ3P48549 501 aa16.92■□□□□ 0.3
PTPRE-201ENST00000254667 TMEM108Q6UXF1 575 aa16.92■□□□□ 0.3
PTPRE-201ENST00000254667 OR2I1PQ8NGU4 316 aa16.92■□□□□ 0.3
PTPRE-201ENST00000254667 SMCHD1A6NHR9 2005 aa16.92■□□□□ 0.3
PTPRE-201ENST00000254667 OR5H15A6NDH6 313 aa16.92■□□□□ 0.3
PTPRE-201ENST00000254667 CRYBB2P43320 205 aa16.92■□□□□ 0.3
PTPRE-201ENST00000254667 LINC00303Q3SY05 128 aa16.92■□□□□ 0.3
PTPRE-201ENST00000254667 LSMEM1Q8N8F7 131 aa16.92■□□□□ 0.3
PTPRE-201ENST00000254667 HIST1H1DP16402 221 aaKnown RBP16.91■□□□□ 0.3
PTPRE-201ENST00000254667 IGFBP7Q16270 282 aa16.91■□□□□ 0.3
PTPRE-201ENST00000254667 H3F3CQ6NXT2 135 aa16.91■□□□□ 0.3
PTPRE-201ENST00000254667 BAGE3Q86Y29 109 aa16.91■□□□□ 0.3
PTPRE-201ENST00000254667 BAGE2Q86Y30 109 aa16.91■□□□□ 0.3
PTPRE-201ENST00000254667 ZNF629Q9UEG4 869 aaPredicted RBP16.91■□□□□ 0.3
PTPRE-201ENST00000254667 PRDX4Q13162 271 aa16.91■□□□□ 0.3
PTPRE-201ENST00000254667 XAF1Q6GPH4 301 aa16.91■□□□□ 0.3
PTPRE-201ENST00000254667 OR2T2Q6IF00 324 aa16.91■□□□□ 0.3
PTPRE-201ENST00000254667 LHX4Q969G2 390 aa16.91■□□□□ 0.3
PTPRE-201ENST00000254667 ZNF275Q9NSD4 429 aaPredicted RBP16.91■□□□□ 0.3
PTPRE-201ENST00000254667 TAAR3PQ9P1P4 343 aa16.91■□□□□ 0.3
PTPRE-201ENST00000254667 RNF24Q9Y225 148 aa16.91■□□□□ 0.3
PTPRE-201ENST00000254667 NME2P1O60361 137 aa16.91■□□□□ 0.3
PTPRE-201ENST00000254667 IAPPP10997 89 aa16.91■□□□□ 0.3
PTPRE-201ENST00000254667 ZNF83P51522 516 aa16.91■□□□□ 0.3
PTPRE-201ENST00000254667 PSG6Q00889 435 aa16.91■□□□□ 0.3
PTPRE-201ENST00000254667 UBE3DQ7Z6J8 389 aa16.91■□□□□ 0.3
PTPRE-201ENST00000254667 PLEKHB1Q9UF11 243 aaPredicted RBP16.91■□□□□ 0.3
PTPRE-201ENST00000254667 MAGEB1P43366 347 aa16.91■□□□□ 0.3
PTPRE-201ENST00000254667 VMA21Q3ZAQ7 101 aa16.91■□□□□ 0.3
PTPRE-201ENST00000254667 MITD1Q8WV92 249 aa16.91■□□□□ 0.3
PTPRE-201ENST00000254667 SLIRPQ9GZT3 109 aaKnown RBP16.91■□□□□ 0.3
PTPRE-201ENST00000254667 RNF32Q9H0A6 362 aa16.91■□□□□ 0.3
PTPRE-201ENST00000254667 ZNF331Q9NQX6 463 aaPredicted RBP16.91■□□□□ 0.3
PTPRE-201ENST00000254667 A0A1W2PPV9 198 aa16.9■□□□□ 0.3
PTPRE-201ENST00000254667 CYR61O00622 381 aa16.9■□□□□ 0.3
PTPRE-201ENST00000254667 ACTL6AO96019 429 aa16.9■□□□□ 0.3
PTPRE-201ENST00000254667 OR5G3P0C626 314 aa16.9■□□□□ 0.3
PTPRE-201ENST00000254667 PNLIPP16233 465 aa16.9■□□□□ 0.3
PTPRE-201ENST00000254667 KHDC1LQ5JSQ8 128 aa16.9■□□□□ 0.3
PTPRE-201ENST00000254667 PNPLA5Q7Z6Z6 429 aaPredicted RBP16.9■□□□□ 0.3
PTPRE-201ENST00000254667 ATG4DQ86TL0 474 aaPredicted RBP16.9■□□□□ 0.3
PTPRE-201ENST00000254667 CCDC71Q8IV32 467 aaPredicted RBP16.9■□□□□ 0.3
PTPRE-201ENST00000254667 TPPP3Q9BW30 176 aa16.9■□□□□ 0.3
PTPRE-201ENST00000254667 WDR54Q9H977 334 aa16.9■□□□□ 0.3
PTPRE-201ENST00000254667 OSGIN2Q9Y236 505 aa16.9■□□□□ 0.3
PTPRE-201ENST00000254667 RGPD4Q7Z3J3 1758 aa16.9■□□□□ 0.3
PTPRE-201ENST00000254667 OR5B21A6NL26 309 aa16.9■□□□□ 0.3
PTPRE-201ENST00000254667 ZBTB25P24278 435 aa16.9■□□□□ 0.3
PTPRE-201ENST00000254667 THSD4Q6ZMP0 1018 aa16.9■□□□□ 0.3
PTPRE-201ENST00000254667 ZNF439Q8NDP4 499 aa16.9■□□□□ 0.3
PTPRE-201ENST00000254667 OR52N4Q8NGI2 321 aa16.9■□□□□ 0.3
PTPRE-201ENST00000254667 ASB10Q8WXI3 467 aa16.9■□□□□ 0.3
PTPRE-201ENST00000254667 FBXW5Q969U6 566 aa16.9■□□□□ 0.3
PTPRE-201ENST00000254667 TUBAL3A6NHL2 446 aa16.9■□□□□ 0.3
PTPRE-201ENST00000254667 OIP5O43482 229 aa16.9■□□□□ 0.3
PTPRE-201ENST00000254667 SULT1A3P0DMM9 295 aa16.9■□□□□ 0.3
PTPRE-201ENST00000254667 SULT1A4P0DMN0 295 aa16.9■□□□□ 0.3
PTPRE-201ENST00000254667 SRSF5Q13243 272 aaKnown RBP16.9■□□□□ 0.3
PTPRE-201ENST00000254667 EIF4EBP2Q13542 120 aaPredicted RBP16.9■□□□□ 0.3
PTPRE-201ENST00000254667 ST8SIA4Q92187 359 aa16.9■□□□□ 0.3
PTPRE-201ENST00000254667 ERGIC1Q969X5 290 aa16.9■□□□□ 0.3
PTPRE-201ENST00000254667 POM121L2Q96KW2 1035 aa16.9■□□□□ 0.3
PTPRE-201ENST00000254667 ARPC4-TTLL3A0A0A6YYG9 625 aa16.9■□□□□ 0.3
PTPRE-201ENST00000254667 A0A1W2PQF6 199 aa16.9■□□□□ 0.3
PTPRE-201ENST00000254667 PRSS23O95084 383 aa16.9■□□□□ 0.3
PTPRE-201ENST00000254667 NGFP01138 241 aa16.9■□□□□ 0.3
PTPRE-201ENST00000254667 DBX2Q6ZNG2 339 aa16.9■□□□□ 0.3
PTPRE-201ENST00000254667 CCL27Q9Y4X3 112 aa16.9■□□□□ 0.3
PTPRE-201ENST00000254667 CTLA4P16410 223 aa16.89■□□□□ 0.3
PTPRE-201ENST00000254667 GUCA2AQ02747 115 aa16.89■□□□□ 0.3
PTPRE-201ENST00000254667 GLDNQ6ZMI3 551 aaPredicted RBP16.89■□□□□ 0.3
PTPRE-201ENST00000254667 PPP1R1CQ8WVI7 109 aa16.89■□□□□ 0.3
PTPRE-201ENST00000254667 MOGAT1Q96PD6 335 aa16.89■□□□□ 0.3
PTPRE-201ENST00000254667 ZNF416Q9BWM5 594 aa16.89■□□□□ 0.3
PTPRE-201ENST00000254667 ESRP2Q9H6T0 727 aaKnown RBP16.89■□□□□ 0.3
PTPRE-201ENST00000254667 TMEM272A0A1B0GTI8 110 aa16.89■□□□□ 0.29
PTPRE-201ENST00000254667 GZMKP49863 264 aa16.89■□□□□ 0.29
PTPRE-201ENST00000254667 TIGITQ495A1 244 aa16.89■□□□□ 0.29
PTPRE-201ENST00000254667 PLA1AQ53H76 456 aa16.89■□□□□ 0.29
PTPRE-201ENST00000254667 NHLRC1Q6VVB1 395 aa16.89■□□□□ 0.29
PTPRE-201ENST00000254667 HGDQ93099 445 aa16.89■□□□□ 0.29
PTPRE-201ENST00000254667 MPC1Q9Y5U8 109 aa16.89■□□□□ 0.29
PTPRE-201ENST00000254667 CLEC18AA5D8T8 446 aa16.89■□□□□ 0.29
PTPRE-201ENST00000254667 H7BYZ3 331 aa16.89■□□□□ 0.29
PTPRE-201ENST00000254667 SCGB1D1O95968 90 aa16.89■□□□□ 0.29
PTPRE-201ENST00000254667 LSM6P62312 80 aaKnown RBP16.89■□□□□ 0.29
PTPRE-201ENST00000254667 ALKBH6Q3KRA9 238 aa16.89■□□□□ 0.29
PTPRE-201ENST00000254667 CLEC18CQ8NCF0 446 aa16.89■□□□□ 0.29
PTPRE-201ENST00000254667 NDFIP1Q9BT67 221 aa16.89■□□□□ 0.29
PTPRE-201ENST00000254667 SMOC1Q9H4F8 434 aa16.89■□□□□ 0.29
PTPRE-201ENST00000254667 OR2M5A3KFT3 312 aa16.89■□□□□ 0.29
PTPRE-201ENST00000254667 CDC42EP2O14613 210 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 136.2 ms