RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 ZNF2Q9BSG1 426 aaPredicted RBP12.7□□□□□ -0.38
SDC1-201ENST00000254351 CERS4Q9HA82 394 aa12.7□□□□□ -0.38
SDC1-201ENST00000254351 TMEM184BQ9Y519 407 aaPredicted RBP12.7□□□□□ -0.38
SDC1-201ENST00000254351 HS3ST3B1Q9Y662 390 aa12.7□□□□□ -0.38
SDC1-201ENST00000254351 DOCK8Q8NF50 2099 aa12.7□□□□□ -0.38
SDC1-201ENST00000254351 FRYQ5TBA9 3013 aa12.7□□□□□ -0.38
SDC1-201ENST00000254351 FRYLO94915 3013 aa12.7□□□□□ -0.38
SDC1-201ENST00000254351 C2orf74A8MZ97 194 aa12.7□□□□□ -0.38
SDC1-201ENST00000254351 TTRP02766 147 aa12.7□□□□□ -0.38
SDC1-201ENST00000254351 HOXA5P20719 270 aa12.7□□□□□ -0.38
SDC1-201ENST00000254351 BLVRBP30043 206 aaPredicted RBP12.7□□□□□ -0.38
SDC1-201ENST00000254351 OPRM1P35372 400 aa12.7□□□□□ -0.38
SDC1-201ENST00000254351 ERVFRD-1P60508 538 aa12.7□□□□□ -0.38
SDC1-201ENST00000254351 PRTGQ2VWP7 1150 aa12.7□□□□□ -0.38
SDC1-201ENST00000254351 PHF19Q5T6S3 580 aa12.7□□□□□ -0.38
SDC1-201ENST00000254351 GGNBP1Q5YKI7 109 aa12.7□□□□□ -0.38
SDC1-201ENST00000254351 TANGO2Q6ICL3 276 aa12.7□□□□□ -0.38
SDC1-201ENST00000254351 OR2T2Q6IF00 324 aa12.7□□□□□ -0.38
SDC1-201ENST00000254351 OR5B2Q96R09 309 aa12.7□□□□□ -0.38
SDC1-201ENST00000254351 SLC35B3Q9H1N7 401 aa12.7□□□□□ -0.38
SDC1-201ENST00000254351 VDAC3Q9Y277 283 aa12.7□□□□□ -0.38
SDC1-201ENST00000254351 MEMO1Q9Y316 297 aa12.7□□□□□ -0.38
SDC1-201ENST00000254351 PPP1R2P9O14990 202 aa12.69□□□□□ -0.38
SDC1-201ENST00000254351 CA3P07451 260 aa12.69□□□□□ -0.38
SDC1-201ENST00000254351 HIST1H1DP16402 221 aaKnown RBP12.69□□□□□ -0.38
SDC1-201ENST00000254351 PCK2Q16822 640 aa12.69□□□□□ -0.38
SDC1-201ENST00000254351 C1orf100Q5SVJ3 147 aa12.69□□□□□ -0.38
SDC1-201ENST00000254351 KLHL24Q6TFL4 600 aa12.69□□□□□ -0.38
SDC1-201ENST00000254351 SHISA6Q6ZSJ9 500 aa12.69□□□□□ -0.38
SDC1-201ENST00000254351 OOSP2Q86WS3 158 aa12.69□□□□□ -0.38
SDC1-201ENST00000254351 TGIF2LXQ8IUE1 241 aa12.69□□□□□ -0.38
SDC1-201ENST00000254351 OR5D14Q8NGL3 314 aa12.69□□□□□ -0.38
SDC1-201ENST00000254351 NTNG2Q96CW9 530 aa12.69□□□□□ -0.38
SDC1-201ENST00000254351 ZDHHC12Q96GR4 267 aa12.69□□□□□ -0.38
SDC1-201ENST00000254351 ASB16Q96NS5 453 aa12.69□□□□□ -0.38
SDC1-201ENST00000254351 RPP25Q9BUL9 199 aaKnown RBP12.69□□□□□ -0.38
SDC1-201ENST00000254351 LUZP4Q9P127 313 aa12.69□□□□□ -0.38
SDC1-201ENST00000254351 THAP10Q9P2Z0 257 aaPredicted RBP12.69□□□□□ -0.38
SDC1-201ENST00000254351 C14orf166Q9Y224 244 aaKnown RBP12.69□□□□□ -0.38
SDC1-201ENST00000254351 STARD10Q9Y365 291 aa12.69□□□□□ -0.38
SDC1-201ENST00000254351 ZNF705GA8MUZ8 300 aaPredicted RBP12.69□□□□□ -0.38
SDC1-201ENST00000254351 CLDN4O14493 209 aa12.69□□□□□ -0.38
SDC1-201ENST00000254351 OR1D4P47884 311 aa12.69□□□□□ -0.38
SDC1-201ENST00000254351 NKX6-1P78426 367 aaPredicted RBP12.69□□□□□ -0.38
SDC1-201ENST00000254351 HEPN1Q6WQI6 88 aa12.69□□□□□ -0.38
SDC1-201ENST00000254351 DYRK2Q92630 601 aa12.69□□□□□ -0.38
SDC1-201ENST00000254351 TSLPQ969D9 159 aa12.69□□□□□ -0.38
SDC1-201ENST00000254351 RAB39BQ96DA2 213 aa12.69□□□□□ -0.38
SDC1-201ENST00000254351 LIN37Q96GY3 246 aaPredicted RBP12.69□□□□□ -0.38
SDC1-201ENST00000254351 SNX22Q96L94 193 aa12.69□□□□□ -0.38
SDC1-201ENST00000254351 GPHA2Q96T91 129 aa12.69□□□□□ -0.38
SDC1-201ENST00000254351 TBL1XR1Q9BZK7 514 aa12.69□□□□□ -0.38
SDC1-201ENST00000254351 PBOV1Q9GZY1 135 aa12.69□□□□□ -0.38
SDC1-201ENST00000254351 WASF3Q9UPY6 502 aa12.69□□□□□ -0.38
SDC1-201ENST00000254351 LIPGQ9Y5X9 500 aa12.69□□□□□ -0.38
SDC1-201ENST00000254351 MASP2O00187 686 aa12.68□□□□□ -0.38
SDC1-201ENST00000254351 NUDT21O43809 227 aaKnown RBP12.68□□□□□ -0.38
SDC1-201ENST00000254351 HIST1H2BKO60814 126 aa12.68□□□□□ -0.38
SDC1-201ENST00000254351 F10P00742 488 aa12.68□□□□□ -0.38
SDC1-201ENST00000254351 BGLAPP02818 100 aa12.68□□□□□ -0.38
SDC1-201ENST00000254351 HIST1H2BJP06899 126 aa12.68□□□□□ -0.38
SDC1-201ENST00000254351 HEXBP07686 556 aa12.68□□□□□ -0.38
SDC1-201ENST00000254351 HIST1H2BOP23527 126 aa12.68□□□□□ -0.38
SDC1-201ENST00000254351 DDTP30046 118 aa12.68□□□□□ -0.38
SDC1-201ENST00000254351 HIST1H2BBP33778 126 aa12.68□□□□□ -0.38
SDC1-201ENST00000254351 HIST1H2BDP58876 126 aa12.68□□□□□ -0.38
SDC1-201ENST00000254351 HIST1H2BCP62807 126 aa12.68□□□□□ -0.38
SDC1-201ENST00000254351 SLC35A1P78382 337 aa12.68□□□□□ -0.38
SDC1-201ENST00000254351 HNF4GQ14541 408 aa12.68□□□□□ -0.38
SDC1-201ENST00000254351 HIST2H2BEQ16778 126 aa12.68□□□□□ -0.38
SDC1-201ENST00000254351 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.68□□□□□ -0.38
SDC1-201ENST00000254351 C1orf140Q5VVS0 124 aa12.68□□□□□ -0.38
SDC1-201ENST00000254351 C6orf201Q7Z4U5 140 aa12.68□□□□□ -0.38
SDC1-201ENST00000254351 C20orf196Q8IYI0 205 aa12.68□□□□□ -0.38
SDC1-201ENST00000254351 DAZLQ92904 295 aaKnown RBP12.68□□□□□ -0.38
SDC1-201ENST00000254351 HIST1H2BHQ93079 126 aa12.68□□□□□ -0.38
SDC1-201ENST00000254351 ELSPBP1Q96BH3 223 aa12.68□□□□□ -0.38
SDC1-201ENST00000254351 C5orf34Q96MH7 638 aa12.68□□□□□ -0.38
SDC1-201ENST00000254351 TAAR9Q96RI9 348 aa12.68□□□□□ -0.38
SDC1-201ENST00000254351 S100A13Q99584 98 aa12.68□□□□□ -0.38
SDC1-201ENST00000254351 HIST1H2BNQ99877 126 aa12.68□□□□□ -0.38
SDC1-201ENST00000254351 HIST1H2BMQ99879 126 aa12.68□□□□□ -0.38
SDC1-201ENST00000254351 PISDQ9UG56 409 aa12.68□□□□□ -0.38
SDC1-201ENST00000254351 NXT1Q9UKK6 140 aaKnown RBP12.68□□□□□ -0.38
SDC1-201ENST00000254351 SHANK1Q9Y566 2161 aa12.68□□□□□ -0.38
SDC1-201ENST00000254351 UNC13CQ8NB66 2214 aa12.68□□□□□ -0.38
SDC1-201ENST00000254351 H3BQ15 152 aa12.68□□□□□ -0.38
SDC1-201ENST00000254351 SLC37A1P57057 533 aa12.68□□□□□ -0.38
SDC1-201ENST00000254351 LSM6P62312 80 aaKnown RBP12.68□□□□□ -0.38
SDC1-201ENST00000254351 PDCD1Q15116 288 aa12.68□□□□□ -0.38
SDC1-201ENST00000254351 EMC4Q5J8M3 183 aa12.68□□□□□ -0.38
SDC1-201ENST00000254351 MEX3BQ6ZN04 569 aaKnown RBP12.68□□□□□ -0.38
SDC1-201ENST00000254351 LYZL2Q7Z4W2 148 aa12.68□□□□□ -0.38
SDC1-201ENST00000254351 SULF2Q8IWU5 870 aa12.68□□□□□ -0.38
SDC1-201ENST00000254351 TMEM217Q8N7C4 229 aa12.68□□□□□ -0.38
SDC1-201ENST00000254351 ZNF610Q8N9Z0 462 aa12.68□□□□□ -0.38
SDC1-201ENST00000254351 ZNF581Q9P0T4 197 aa12.68□□□□□ -0.38
SDC1-201ENST00000254351 CDC14BO60729 498 aa12.68□□□□□ -0.38
SDC1-201ENST00000254351 SCAF4O95104 1147 aaKnown RBP12.68□□□□□ -0.38
SDC1-201ENST00000254351 CHATP28329 748 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms