RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 EXT1Q16394 746 aa14.4□□□□□ -0.1
HOXD3-201ENST00000249440 PLEKHN1Q494U1 663 aaPredicted RBP14.4□□□□□ -0.1
HOXD3-201ENST00000249440 CTRB2Q6GPI1 263 aa14.4□□□□□ -0.1
HOXD3-201ENST00000249440 PRSS54Q6PEW0 395 aa14.4□□□□□ -0.1
HOXD3-201ENST00000249440 ZSCAN4Q8NAM6 433 aaPredicted RBP14.4□□□□□ -0.1
HOXD3-201ENST00000249440 CCDC54Q8NEL0 328 aa14.4□□□□□ -0.1
HOXD3-201ENST00000249440 OR52H1Q8NGJ2 320 aa14.4□□□□□ -0.1
HOXD3-201ENST00000249440 RHBDD1Q8TEB9 315 aa14.4□□□□□ -0.1
HOXD3-201ENST00000249440 RNF141Q8WVD5 230 aa14.4□□□□□ -0.1
HOXD3-201ENST00000249440 NABP1Q96AH0 204 aa14.4□□□□□ -0.1
HOXD3-201ENST00000249440 TM2D1Q9BX74 207 aa14.4□□□□□ -0.1
HOXD3-201ENST00000249440 PECRQ9BY49 303 aa14.4□□□□□ -0.1
HOXD3-201ENST00000249440 PIGLQ9Y2B2 252 aa14.4□□□□□ -0.1
HOXD3-201ENST00000249440 PCDHGA1Q9Y5H4 931 aa14.4□□□□□ -0.1
HOXD3-201ENST00000249440 IGHV3-15A0A0B4J1V0 119 aa14.4□□□□□ -0.11
HOXD3-201ENST00000249440 H0YIZ8 118 aa14.4□□□□□ -0.11
HOXD3-201ENST00000249440 HTR3BO95264 441 aa14.4□□□□□ -0.11
HOXD3-201ENST00000249440 OTX1P32242 354 aaPredicted RBP14.4□□□□□ -0.11
HOXD3-201ENST00000249440 HIST1H3AP68431 136 aa14.4□□□□□ -0.11
HOXD3-201ENST00000249440 SURF2Q15527 256 aaPredicted RBP14.4□□□□□ -0.11
HOXD3-201ENST00000249440 CHRFAM7AQ494W8 412 aa14.4□□□□□ -0.11
HOXD3-201ENST00000249440 HIST2H3PS2Q5TEC6 136 aa14.4□□□□□ -0.11
HOXD3-201ENST00000249440 NSUN5P2Q63ZY6 315 aa14.4□□□□□ -0.11
HOXD3-201ENST00000249440 FAM122CQ6P4D5 195 aa14.4□□□□□ -0.11
HOXD3-201ENST00000249440 HIST2H3AQ71DI3 136 aa14.4□□□□□ -0.11
HOXD3-201ENST00000249440 OR9K2Q8NGE7 335 aa14.4□□□□□ -0.11
HOXD3-201ENST00000249440 EMG1Q92979 244 aaKnown RBP14.4□□□□□ -0.11
HOXD3-201ENST00000249440 RRNAD1Q96FB5 475 aaKnown RBP14.4□□□□□ -0.11
HOXD3-201ENST00000249440 CYYR1Q96J86 154 aa14.4□□□□□ -0.11
HOXD3-201ENST00000249440 ASF1BQ9NVP2 202 aa14.4□□□□□ -0.11
HOXD3-201ENST00000249440 FIGNL2A6NMB9 653 aa14.39□□□□□ -0.11
HOXD3-201ENST00000249440 M0R135 149 aa14.39□□□□□ -0.11
HOXD3-201ENST00000249440 CA11O75493 328 aa14.39□□□□□ -0.11
HOXD3-201ENST00000249440 HPNP05981 417 aa14.39□□□□□ -0.11
HOXD3-201ENST00000249440 PET100P0DJ07 73 aa14.39□□□□□ -0.11
HOXD3-201ENST00000249440 LYL1P12980 280 aa14.39□□□□□ -0.11
HOXD3-201ENST00000249440 LIFP15018 202 aa14.39□□□□□ -0.11
HOXD3-201ENST00000249440 PPA1Q15181 289 aa14.39□□□□□ -0.11
HOXD3-201ENST00000249440 HLA-BQ31612 363 aa14.39□□□□□ -0.11
HOXD3-201ENST00000249440 ANKRD55Q3KP44 614 aa14.39□□□□□ -0.11
HOXD3-201ENST00000249440 Q6ZSR3 168 aa14.39□□□□□ -0.11
HOXD3-201ENST00000249440 TMEM123Q8N131 208 aa14.39□□□□□ -0.11
HOXD3-201ENST00000249440 ROBO4Q8WZ75 1007 aa14.39□□□□□ -0.11
HOXD3-201ENST00000249440 SPTSSAQ969W0 71 aa14.39□□□□□ -0.11
HOXD3-201ENST00000249440 INTS12Q96CB8 462 aaKnown RBP14.39□□□□□ -0.11
HOXD3-201ENST00000249440 ZNF799Q96GE5 643 aa14.39□□□□□ -0.11
HOXD3-201ENST00000249440 IMMP1LQ96LU5 166 aa14.39□□□□□ -0.11
HOXD3-201ENST00000249440 ELL3Q9HB65 397 aaPredicted RBP14.39□□□□□ -0.11
HOXD3-201ENST00000249440 PLEK2Q9NYT0 353 aa14.39□□□□□ -0.11
HOXD3-201ENST00000249440 PRELID1Q9Y255 219 aa14.39□□□□□ -0.11
HOXD3-201ENST00000249440 MPTX1A8MV57 137 aa14.38□□□□□ -0.11
HOXD3-201ENST00000249440 TOR1AO14656 332 aa14.38□□□□□ -0.11
HOXD3-201ENST00000249440 CD63P08962 238 aa14.38□□□□□ -0.11
HOXD3-201ENST00000249440 CCL3P10147 92 aa14.38□□□□□ -0.11
HOXD3-201ENST00000249440 GLRA1P23415 457 aa14.38□□□□□ -0.11
HOXD3-201ENST00000249440 ZNF84P51523 738 aa14.38□□□□□ -0.11
HOXD3-201ENST00000249440 RSPO1Q2MKA7 263 aaPredicted RBP14.38□□□□□ -0.11
HOXD3-201ENST00000249440 UBALD2Q8IYN6 164 aa14.38□□□□□ -0.11
HOXD3-201ENST00000249440 BOLLQ8N9W6 283 aaKnown RBP14.38□□□□□ -0.11
HOXD3-201ENST00000249440 C2orf50Q96LR7 162 aa14.38□□□□□ -0.11
HOXD3-201ENST00000249440 NKX6-2Q9C056 277 aaPredicted RBP14.38□□□□□ -0.11
HOXD3-201ENST00000249440 ZNF700Q9H0M5 742 aa14.38□□□□□ -0.11
HOXD3-201ENST00000249440 SLC6A15Q9H2J7 730 aa14.38□□□□□ -0.11
HOXD3-201ENST00000249440 CYTL1Q9NRR1 136 aa14.38□□□□□ -0.11
HOXD3-201ENST00000249440 TMEM100Q9NV29 134 aa14.38□□□□□ -0.11
HOXD3-201ENST00000249440 PRR13Q9NZ81 148 aa14.38□□□□□ -0.11
HOXD3-201ENST00000249440 DKKL1Q9UK85 242 aa14.38□□□□□ -0.11
HOXD3-201ENST00000249440 ZIC3O60481 467 aa14.38□□□□□ -0.11
HOXD3-201ENST00000249440 SSR4P51571 173 aa14.38□□□□□ -0.11
HOXD3-201ENST00000249440 NKAPLQ5M9Q1 402 aa14.38□□□□□ -0.11
HOXD3-201ENST00000249440 MAML2Q8IZL2 1156 aaPredicted RBP14.38□□□□□ -0.11
HOXD3-201ENST00000249440 PAQR8Q8TEZ7 354 aa14.38□□□□□ -0.11
HOXD3-201ENST00000249440 JSRP1Q96MG2 331 aaPredicted RBP14.38□□□□□ -0.11
HOXD3-201ENST00000249440 UCN2Q96RP3 112 aa14.38□□□□□ -0.11
HOXD3-201ENST00000249440 FSCN3Q9NQT6 498 aa14.38□□□□□ -0.11
HOXD3-201ENST00000249440 C14orf166Q9Y224 244 aaKnown RBP14.38□□□□□ -0.11
HOXD3-201ENST00000249440 PTRH2Q9Y3E5 179 aaKnown RBP14.38□□□□□ -0.11
HOXD3-201ENST00000249440 KIAA1549Q9HCM3 1950 aa14.37□□□□□ -0.11
HOXD3-201ENST00000249440 DNASE2O00115 360 aaPredicted RBP14.37□□□□□ -0.11
HOXD3-201ENST00000249440 SIGLEC5O15389 551 aa14.37□□□□□ -0.11
HOXD3-201ENST00000249440 GDF9O60383 454 aa14.37□□□□□ -0.11
HOXD3-201ENST00000249440 COX6A1P12074 109 aa14.37□□□□□ -0.11
HOXD3-201ENST00000249440 ECI1P42126 302 aa14.37□□□□□ -0.11
HOXD3-201ENST00000249440 SIGLEC14Q08ET2 396 aa14.37□□□□□ -0.11
HOXD3-201ENST00000249440 CCDC157Q569K6 752 aa14.37□□□□□ -0.11
HOXD3-201ENST00000249440 M1APQ8TC57 530 aa14.37□□□□□ -0.11
HOXD3-201ENST00000249440 IFI44Q8TCB0 444 aa14.37□□□□□ -0.11
HOXD3-201ENST00000249440 MAFIPQ8WZ33 124 aa14.37□□□□□ -0.11
HOXD3-201ENST00000249440 MR1Q95460 341 aa14.37□□□□□ -0.11
HOXD3-201ENST00000249440 PIGTQ969N2 578 aa14.37□□□□□ -0.11
HOXD3-201ENST00000249440 OR10C1Q96KK4 312 aa14.37□□□□□ -0.11
HOXD3-201ENST00000249440 AQP10Q96PS8 301 aa14.37□□□□□ -0.11
HOXD3-201ENST00000249440 ULBP2Q9BZM5 246 aa14.37□□□□□ -0.11
HOXD3-201ENST00000249440 PROK2Q9HC23 129 aa14.37□□□□□ -0.11
HOXD3-201ENST00000249440 ZNF701Q9NV72 531 aaPredicted RBP14.37□□□□□ -0.11
HOXD3-201ENST00000249440 FOXD3Q9UJU5 478 aaPredicted RBP14.37□□□□□ -0.11
HOXD3-201ENST00000249440 NUDT19A8MXV4 375 aa14.37□□□□□ -0.11
HOXD3-201ENST00000249440 ATG12O94817 140 aa14.37□□□□□ -0.11
HOXD3-201ENST00000249440 UMODP07911 640 aa14.37□□□□□ -0.11
HOXD3-201ENST00000249440 CD79AP11912 226 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms