RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 IL15RAQ13261 267 aa9.35□□□□□ -0.91
USP28-201ENST00000003302 TMEM128Q5BJH2 165 aa9.35□□□□□ -0.91
USP28-201ENST00000003302 LHFPL1Q86WI0 220 aa9.35□□□□□ -0.91
USP28-201ENST00000003302 OR51T1Q8NGJ9 327 aa9.35□□□□□ -0.91
USP28-201ENST00000003302 OR14K1Q8NGZ2 314 aa9.35□□□□□ -0.91
USP28-201ENST00000003302 RASL10BQ96S79 203 aa9.35□□□□□ -0.91
USP28-201ENST00000003302 MYOZ1Q9NP98 299 aaPredicted RBP9.35□□□□□ -0.91
USP28-201ENST00000003302 MYOTQ9UBF9 498 aa9.35□□□□□ -0.91
USP28-201ENST00000003302 ZDHHC8Q9ULC8 765 aa9.35□□□□□ -0.91
USP28-201ENST00000003302 HSFX4A0A1B0GTS1 333 aaPredicted RBP9.35□□□□□ -0.91
USP28-201ENST00000003302 HSFX3A0A1B0GWH4 333 aaPredicted RBP9.35□□□□□ -0.91
USP28-201ENST00000003302 VSTM2BA6NLU5 285 aa9.35□□□□□ -0.91
USP28-201ENST00000003302 NXPH3O95157 252 aa9.35□□□□□ -0.91
USP28-201ENST00000003302 IGHV3-9P01782 118 aa9.35□□□□□ -0.91
USP28-201ENST00000003302 ZNF20P17024 532 aa9.35□□□□□ -0.91
USP28-201ENST00000003302 C4BPBP20851 252 aa9.35□□□□□ -0.91
USP28-201ENST00000003302 C17orf67Q0P5P2 114 aa9.35□□□□□ -0.91
USP28-201ENST00000003302 PIGYQ3MUY2 71 aa9.35□□□□□ -0.91
USP28-201ENST00000003302 ABHD14AQ9BUJ0 271 aa9.35□□□□□ -0.91
USP28-201ENST00000003302 SLC5A7Q9GZV3 580 aa9.35□□□□□ -0.91
USP28-201ENST00000003302 GPR173Q9NS66 373 aa9.35□□□□□ -0.91
USP28-201ENST00000003302 PPP4R1LQ9P1A2 415 aa9.35□□□□□ -0.91
USP28-201ENST00000003302 SPTBN2O15020 2390 aa9.35□□□□□ -0.91
USP28-201ENST00000003302 LRBAP50851 2863 aa9.35□□□□□ -0.91
USP28-201ENST00000003302 FOXI3A8MTJ6 420 aaPredicted RBP9.35□□□□□ -0.91
USP28-201ENST00000003302 SHEQ5VZ18 495 aa9.35□□□□□ -0.91
USP28-201ENST00000003302 DHRS11Q6UWP2 260 aa9.35□□□□□ -0.91
USP28-201ENST00000003302 Q7L0L9 218 aa9.35□□□□□ -0.91
USP28-201ENST00000003302 CPEB2Q7Z5Q1 589 aaKnown RBP9.35□□□□□ -0.91
USP28-201ENST00000003302 TMEM17Q86X19 198 aa9.35□□□□□ -0.91
USP28-201ENST00000003302 SLC30A7Q8NEW0 376 aa9.35□□□□□ -0.91
USP28-201ENST00000003302 NOXO1Q8NFA2 376 aa9.35□□□□□ -0.91
USP28-201ENST00000003302 SECTM1Q8WVN6 248 aa9.35□□□□□ -0.91
USP28-201ENST00000003302 WFDC1Q9HC57 220 aa9.35□□□□□ -0.91
USP28-201ENST00000003302 TMEM100Q9NV29 134 aa9.35□□□□□ -0.91
USP28-201ENST00000003302 UQCC1Q9NVA1 299 aa9.35□□□□□ -0.91
USP28-201ENST00000003302 OSGIN2Q9Y236 505 aa9.35□□□□□ -0.91
USP28-201ENST00000003302 MTCH2Q9Y6C9 303 aa9.35□□□□□ -0.91
USP28-201ENST00000003302 CHD3Q12873 2000 aaKnown RBP9.35□□□□□ -0.91
USP28-201ENST00000003302 LY6G6EA0A0G2JKS1 128 aa9.35□□□□□ -0.91
USP28-201ENST00000003302 SIGLEC6O43699 453 aa9.35□□□□□ -0.91
USP28-201ENST00000003302 BPNT1O95861 308 aa9.35□□□□□ -0.91
USP28-201ENST00000003302 CCL3P10147 92 aa9.35□□□□□ -0.91
USP28-201ENST00000003302 NKAIN3Q8N8D7 197 aa9.35□□□□□ -0.91
USP28-201ENST00000003302 TOMM40LQ969M1 308 aa9.35□□□□□ -0.91
USP28-201ENST00000003302 JSRP1Q96MG2 331 aaPredicted RBP9.35□□□□□ -0.91
USP28-201ENST00000003302 METTL8Q9H825 291 aaKnown RBP9.35□□□□□ -0.91
USP28-201ENST00000003302 U3KQA8 63 aa9.35□□□□□ -0.91
USP28-201ENST00000003302 ZZEF1O43149 2961 aa9.34□□□□□ -0.91
USP28-201ENST00000003302 FAM157AC9JC47 383 aa9.34□□□□□ -0.91
USP28-201ENST00000003302 SCGB1D2O95969 90 aa9.34□□□□□ -0.91
USP28-201ENST00000003302 AGTR1P30556 359 aa9.34□□□□□ -0.91
USP28-201ENST00000003302 CSNK2A1P68400 391 aaPredicted RBP9.34□□□□□ -0.91
USP28-201ENST00000003302 HDDC2Q7Z4H3 204 aa9.34□□□□□ -0.91
USP28-201ENST00000003302 CSNK2A3Q8NEV1 391 aa9.34□□□□□ -0.91
USP28-201ENST00000003302 OR56B1Q8NGI3 324 aa9.34□□□□□ -0.91
USP28-201ENST00000003302 SHDQ96IW2 340 aa9.34□□□□□ -0.91
USP28-201ENST00000003302 SLC7A5P2Q9GIP4 190 aa9.34□□□□□ -0.91
USP28-201ENST00000003302 SLC26A1Q9H2B4 701 aa9.34□□□□□ -0.91
USP28-201ENST00000003302 SLC6A15Q9H2J7 730 aa9.34□□□□□ -0.91
USP28-201ENST00000003302 C8orf33Q9H7E9 229 aaPredicted RBP9.34□□□□□ -0.91
USP28-201ENST00000003302 METTL7AQ9H8H3 244 aa9.34□□□□□ -0.91
USP28-201ENST00000003302 PROK2Q9HC23 129 aa9.34□□□□□ -0.91
USP28-201ENST00000003302 TTC28Q96AY4 2481 aa9.34□□□□□ -0.91
USP28-201ENST00000003302 IGKV1-12A0A0C4DH73 117 aa9.34□□□□□ -0.91
USP28-201ENST00000003302 ZNF878C9JN71 531 aa9.34□□□□□ -0.91
USP28-201ENST00000003302 IGKV1D-12P01611 117 aa9.34□□□□□ -0.91
USP28-201ENST00000003302 HEXBP07686 556 aa9.34□□□□□ -0.91
USP28-201ENST00000003302 AMY2BP19961 511 aa9.34□□□□□ -0.91
USP28-201ENST00000003302 RAB6AP20340 208 aa9.34□□□□□ -0.91
USP28-201ENST00000003302 DAP3P51398 398 aaKnown RBP9.34□□□□□ -0.91
USP28-201ENST00000003302 HNRNPKP61978 463 aaKnown RBP eCLIP9.34□□□□□ -0.91
USP28-201ENST00000003302 AIMP2Q13155 320 aaKnown RBP9.34□□□□□ -0.91
USP28-201ENST00000003302 ENDOGQ14249 297 aaKnown RBP9.34□□□□□ -0.91
USP28-201ENST00000003302 PHF19Q5T6S3 580 aa9.34□□□□□ -0.91
USP28-201ENST00000003302 KLHL24Q6TFL4 600 aa9.34□□□□□ -0.91
USP28-201ENST00000003302 ZDHHC22Q8N966 263 aa9.34□□□□□ -0.91
USP28-201ENST00000003302 POC1AQ8NBT0 407 aa9.34□□□□□ -0.91
USP28-201ENST00000003302 AKR1E2Q96JD6 320 aa9.34□□□□□ -0.91
USP28-201ENST00000003302 NECAB3Q96P71 396 aaPredicted RBP9.34□□□□□ -0.91
USP28-201ENST00000003302 CLCC1Q96S66 551 aa9.34□□□□□ -0.91
USP28-201ENST00000003302 ZNF629Q9UEG4 869 aaPredicted RBP9.34□□□□□ -0.91
USP28-201ENST00000003302 WIF1Q9Y5W5 379 aa9.34□□□□□ -0.91
USP28-201ENST00000003302 TRBV6-7A0A0A0MS04 114 aa9.34□□□□□ -0.91
USP28-201ENST00000003302 SFT2D2O95562 160 aa9.34□□□□□ -0.91
USP28-201ENST00000003302 FCGR2AP12318 317 aa9.34□□□□□ -0.91
USP28-201ENST00000003302 PTGFRP43088 359 aa9.34□□□□□ -0.91
USP28-201ENST00000003302 F2RL1P55085 397 aa9.34□□□□□ -0.91
USP28-201ENST00000003302 HOXA4Q00056 320 aaPredicted RBP9.34□□□□□ -0.91
USP28-201ENST00000003302 ZP4Q12836 540 aa9.34□□□□□ -0.91
USP28-201ENST00000003302 MEF2DQ14814 521 aa9.34□□□□□ -0.91
USP28-201ENST00000003302 SLC25A47Q6Q0C1 308 aa9.34□□□□□ -0.91
USP28-201ENST00000003302 OR10Z1Q8NGY1 313 aa9.34□□□□□ -0.91
USP28-201ENST00000003302 NRIP2Q9BQI9 281 aa9.34□□□□□ -0.91
USP28-201ENST00000003302 SRPK3Q9UPE1 567 aa9.34□□□□□ -0.91
USP28-201ENST00000003302 PCSK5Q92824 1860 aa9.34□□□□□ -0.91
USP28-201ENST00000003302 MEGF11A6BM72 1044 aa9.34□□□□□ -0.91
USP28-201ENST00000003302 MBTPS2O43462 519 aa9.34□□□□□ -0.91
USP28-201ENST00000003302 HKR1P10072 659 aa9.34□□□□□ -0.91
USP28-201ENST00000003302 SSBP1Q04837 148 aaKnown RBP9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms