RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 RNF7Q9UBF6 113 aa15.38■□□□□ 0.05
CLN3-259ENST00000637551 GNG8Q9UK08 70 aa15.38■□□□□ 0.05
CLN3-259ENST00000637551 KCNS2Q9ULS6 477 aa15.38■□□□□ 0.05
CLN3-259ENST00000637551 RHBDD3Q9Y3P4 386 aa15.38■□□□□ 0.05
CLN3-259ENST00000637551 DOCK11Q5JSL3 2073 aa15.38■□□□□ 0.05
CLN3-259ENST00000637551 WNK2Q9Y3S1 2297 aa15.37■□□□□ 0.05
CLN3-259ENST00000637551 TRAV20A0A0B4J274 112 aa15.37■□□□□ 0.05
CLN3-259ENST00000637551 LRP5LA4QPB2 252 aa15.37■□□□□ 0.05
CLN3-259ENST00000637551 A8MXK9 166 aa15.37■□□□□ 0.05
CLN3-259ENST00000637551 CEACAM21Q3KPI0 293 aa15.37■□□□□ 0.05
CLN3-259ENST00000637551 TMEM244Q5VVB8 128 aa15.37■□□□□ 0.05
CLN3-259ENST00000637551 THAP5Q7Z6K1 395 aa15.37■□□□□ 0.05
CLN3-259ENST00000637551 MOGAT3Q86VF5 341 aa15.37■□□□□ 0.05
CLN3-259ENST00000637551 COMMD2Q86X83 199 aa15.37■□□□□ 0.05
CLN3-259ENST00000637551 OR5A2Q8NGI9 324 aa15.37■□□□□ 0.05
CLN3-259ENST00000637551 OR10Z1Q8NGY1 313 aa15.37■□□□□ 0.05
CLN3-259ENST00000637551 HIST1H2AAQ96QV6 131 aa15.37■□□□□ 0.05
CLN3-259ENST00000637551 ZNF649Q9BS31 505 aa15.37■□□□□ 0.05
CLN3-259ENST00000637551 ACOXLQ9NUZ1 547 aa15.37■□□□□ 0.05
CLN3-259ENST00000637551 ERVK13-1Q9NX77 482 aa15.37■□□□□ 0.05
CLN3-259ENST00000637551 NKX1-2Q9UD57 310 aaPredicted RBP15.37■□□□□ 0.05
CLN3-259ENST00000637551 CDC42EP3Q9UKI2 254 aa15.37■□□□□ 0.05
CLN3-259ENST00000637551 DIMT1Q9UNQ2 313 aaKnown RBP15.37■□□□□ 0.05
CLN3-259ENST00000637551 LOC100289279A0A1B0GTE1 492 aa15.36■□□□□ 0.05
CLN3-259ENST00000637551 A0A1B0GTI1 187 aa15.36■□□□□ 0.05
CLN3-259ENST00000637551 A0A1B0GVI7 797 aa15.36■□□□□ 0.05
CLN3-259ENST00000637551 F5H0A9 414 aaPredicted RBP15.36■□□□□ 0.05
CLN3-259ENST00000637551 APOL3O95236 402 aa15.36■□□□□ 0.05
CLN3-259ENST00000637551 MSMBP08118 114 aa15.36■□□□□ 0.05
CLN3-259ENST00000637551 TGM4P49221 684 aa15.36■□□□□ 0.05
CLN3-259ENST00000637551 PRSS12P56730 875 aa15.36■□□□□ 0.05
CLN3-259ENST00000637551 GNG3P63215 75 aa15.36■□□□□ 0.05
CLN3-259ENST00000637551 MVKQ03426 396 aa15.36■□□□□ 0.05
CLN3-259ENST00000637551 PRDX4Q13162 271 aa15.36■□□□□ 0.05
CLN3-259ENST00000637551 ZMYND11Q15326 602 aa15.36■□□□□ 0.05
CLN3-259ENST00000637551 ZNF404Q494X3 552 aa15.36■□□□□ 0.05
CLN3-259ENST00000637551 CCDC58Q4VC31 144 aa15.36■□□□□ 0.05
CLN3-259ENST00000637551 OR1M1Q8NGA1 313 aa15.36■□□□□ 0.05
CLN3-259ENST00000637551 OR52I1Q8NGK6 324 aa15.36■□□□□ 0.05
CLN3-259ENST00000637551 OR2G2Q8NGZ5 317 aa15.36■□□□□ 0.05
CLN3-259ENST00000637551 C12orf43Q96C57 262 aaKnown RBP15.36■□□□□ 0.05
CLN3-259ENST00000637551 ALG8Q9BVK2 526 aa15.36■□□□□ 0.05
CLN3-259ENST00000637551 TTTY10Q9BZA0 68 aa15.36■□□□□ 0.05
CLN3-259ENST00000637551 PATZ1Q9HBE1 687 aaKnown RBP15.36■□□□□ 0.05
CLN3-259ENST00000637551 MIOXQ9UGB7 285 aa15.36■□□□□ 0.05
CLN3-259ENST00000637551 LRCH1Q9Y2L9 728 aa15.36■□□□□ 0.05
CLN3-259ENST00000637551 CAB39Q9Y376 341 aaPredicted RBP15.36■□□□□ 0.05
CLN3-259ENST00000637551 EXOSC1Q9Y3B2 195 aaKnown RBP15.36■□□□□ 0.05
CLN3-259ENST00000637551 EFCAB10A6NFE3 127 aa15.35■□□□□ 0.05
CLN3-259ENST00000637551 LMX1BO60663 402 aa15.35■□□□□ 0.05
CLN3-259ENST00000637551 LHBP01229 141 aa15.35■□□□□ 0.05
CLN3-259ENST00000637551 CCDC159P0C7I6 412 aa15.35■□□□□ 0.05
CLN3-259ENST00000637551 ZNF154Q13106 437 aa15.35■□□□□ 0.05
CLN3-259ENST00000637551 WDR38Q5JTN6 314 aa15.35■□□□□ 0.05
CLN3-259ENST00000637551 CLVS2Q5SYC1 327 aa15.35■□□□□ 0.05
CLN3-259ENST00000637551 DCDC5Q6ZRR9 648 aa15.35■□□□□ 0.05
CLN3-259ENST00000637551 GLCCI1Q86VQ1 547 aa15.35■□□□□ 0.05
CLN3-259ENST00000637551 OR14K1Q8NGZ2 314 aa15.35■□□□□ 0.05
CLN3-259ENST00000637551 PP6455Q8WZ26 134 aa15.35■□□□□ 0.05
CLN3-259ENST00000637551 RNF166Q96A37 237 aaPredicted RBP15.35■□□□□ 0.05
CLN3-259ENST00000637551 PELI1Q96FA3 418 aa15.35■□□□□ 0.05
CLN3-259ENST00000637551 SOX7Q9BT81 388 aa15.35■□□□□ 0.05
CLN3-259ENST00000637551 GTF2A1LQ9UNN4 478 aa15.35■□□□□ 0.05
CLN3-259ENST00000637551 MYRFQ9Y2G1 1151 aa15.35■□□□□ 0.05
CLN3-259ENST00000637551 PPIAL4AQ9Y536 164 aa15.35■□□□□ 0.05
CLN3-259ENST00000637551 TRAV38-1A0A0B4J264 116 aa15.34■□□□□ 0.05
CLN3-259ENST00000637551 ISPDA4D126 451 aa15.34■□□□□ 0.05
CLN3-259ENST00000637551 TMEM212A6NML5 194 aa15.34■□□□□ 0.05
CLN3-259ENST00000637551 J3QLI3 93 aa15.34■□□□□ 0.05
CLN3-259ENST00000637551 SYT7O43581 403 aa15.34■□□□□ 0.05
CLN3-259ENST00000637551 CRLF1O75462 422 aa15.34■□□□□ 0.05
CLN3-259ENST00000637551 FOXH1O75593 365 aa15.34■□□□□ 0.05
CLN3-259ENST00000637551 RPP14O95059 124 aaKnown RBP15.34■□□□□ 0.05
CLN3-259ENST00000637551 HTR1AP08908 422 aa15.34■□□□□ 0.05
CLN3-259ENST00000637551 MUC1P15941 1255 aaPredicted RBP15.34■□□□□ 0.05
CLN3-259ENST00000637551 ZNF16P17020 682 aaPredicted RBP15.34■□□□□ 0.05
CLN3-259ENST00000637551 MYL12AP19105 171 aa15.34■□□□□ 0.05
CLN3-259ENST00000637551 HNF1AP20823 631 aa15.34■□□□□ 0.05
CLN3-259ENST00000637551 IL2RGP31785 369 aa15.34■□□□□ 0.05
CLN3-259ENST00000637551 PMELP40967 661 aa15.34■□□□□ 0.05
CLN3-259ENST00000637551 OR12D2P58182 307 aa15.34■□□□□ 0.05
CLN3-259ENST00000637551 MPPED2Q15777 294 aa15.34■□□□□ 0.05
CLN3-259ENST00000637551 TP53I3Q53FA7 332 aa15.34■□□□□ 0.05
CLN3-259ENST00000637551 AVPI1Q5T686 147 aa15.34■□□□□ 0.05
CLN3-259ENST00000637551 TEX36Q5VZQ5 186 aa15.34■□□□□ 0.05
CLN3-259ENST00000637551 TMPRSS11AQ6ZMR5 421 aa15.34■□□□□ 0.05
CLN3-259ENST00000637551 NLRC3Q7RTR2 1065 aa15.34■□□□□ 0.05
CLN3-259ENST00000637551 HPSE2Q8WWQ2 592 aa15.34■□□□□ 0.05
CLN3-259ENST00000637551 TMEM186Q96B77 213 aa15.34■□□□□ 0.05
CLN3-259ENST00000637551 FAM71F1Q96KD3 344 aaPredicted RBP15.34■□□□□ 0.05
CLN3-259ENST00000637551 C4orf36Q96KX1 117 aa15.34■□□□□ 0.05
CLN3-259ENST00000637551 PLEKHA1Q9HB21 404 aa15.34■□□□□ 0.05
CLN3-259ENST00000637551 PCDHB10Q9UN67 800 aa15.34■□□□□ 0.05
CLN3-259ENST00000637551 PIGLQ9Y2B2 252 aa15.34■□□□□ 0.05
CLN3-259ENST00000637551 ZNF850A8MQ14 1090 aa15.33■□□□□ 0.04
CLN3-259ENST00000637551 LGALS8O00214 317 aa15.33■□□□□ 0.04
CLN3-259ENST00000637551 WNT9BO14905 357 aa15.33■□□□□ 0.04
CLN3-259ENST00000637551 MAGEB4O15481 346 aaPredicted RBP15.33■□□□□ 0.04
CLN3-259ENST00000637551 GATBO75879 557 aaKnown RBP15.33■□□□□ 0.04
CLN3-259ENST00000637551 NRASP01111 189 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms