RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 SLC22A6Q4U2R8 563 aa13.66□□□□□ -0.22
CLN3-251ENST00000636853 TMPRSS7Q7RTY8 843 aa13.66□□□□□ -0.22
CLN3-251ENST00000636853 C1QL2Q7Z5L3 287 aa13.66□□□□□ -0.22
CLN3-251ENST00000636853 CDH26Q8IXH8 852 aa13.66□□□□□ -0.22
CLN3-251ENST00000636853 OR10R2Q8NGX6 335 aa13.66□□□□□ -0.22
CLN3-251ENST00000636853 PIGTQ969N2 578 aa13.66□□□□□ -0.22
CLN3-251ENST00000636853 DEFB127Q9H1M4 99 aa13.66□□□□□ -0.22
CLN3-251ENST00000636853 TIMM10BQ9Y5J6 103 aa13.66□□□□□ -0.22
CLN3-251ENST00000636853 ZNF736B4DX44 427 aaPredicted RBP13.65□□□□□ -0.22
CLN3-251ENST00000636853 SOCS1O15524 211 aa13.65□□□□□ -0.22
CLN3-251ENST00000636853 MTRF1O75570 445 aaKnown RBP13.65□□□□□ -0.22
CLN3-251ENST00000636853 CSN2P05814 226 aa13.65□□□□□ -0.22
CLN3-251ENST00000636853 PRF1P14222 555 aa13.65□□□□□ -0.22
CLN3-251ENST00000636853 ACKR3P25106 362 aa13.65□□□□□ -0.22
CLN3-251ENST00000636853 MECP2P51608 486 aaKnown RBP13.65□□□□□ -0.22
CLN3-251ENST00000636853 Q6ZSR3 168 aa13.65□□□□□ -0.22
CLN3-251ENST00000636853 SLC36A1Q7Z2H8 476 aa13.65□□□□□ -0.22
CLN3-251ENST00000636853 OR2W3Q7Z3T1 314 aa13.65□□□□□ -0.22
CLN3-251ENST00000636853 ZNF584Q8IVC4 421 aa13.65□□□□□ -0.22
CLN3-251ENST00000636853 LHFPL5Q8TAF8 219 aa13.65□□□□□ -0.22
CLN3-251ENST00000636853 REEP6Q96HR9 211 aa13.65□□□□□ -0.22
CLN3-251ENST00000636853 CHST5Q9GZS9 411 aa13.65□□□□□ -0.22
CLN3-251ENST00000636853 NPDC1Q9NQX5 325 aaPredicted RBP13.65□□□□□ -0.22
CLN3-251ENST00000636853 MCTS1Q9ULC4 181 aaKnown RBP13.65□□□□□ -0.22
CLN3-251ENST00000636853 CSAG2Q9Y5P2 127 aa13.65□□□□□ -0.22
CLN3-251ENST00000636853 CRTAPO75718 401 aaPredicted RBP13.65□□□□□ -0.22
CLN3-251ENST00000636853 AMY2AP04746 511 aa13.65□□□□□ -0.22
CLN3-251ENST00000636853 IL5P05113 134 aa13.65□□□□□ -0.22
CLN3-251ENST00000636853 OR8H3Q8N146 312 aa13.65□□□□□ -0.22
CLN3-251ENST00000636853 OR11H4Q8NGC9 324 aa13.65□□□□□ -0.22
CLN3-251ENST00000636853 KCNG3Q8TAE7 436 aa13.65□□□□□ -0.22
CLN3-251ENST00000636853 PP6455Q8WZ26 134 aa13.65□□□□□ -0.22
CLN3-251ENST00000636853 TMEM59Q9BXS4 323 aa13.65□□□□□ -0.22
CLN3-251ENST00000636853 ZNF436Q9C0F3 470 aaPredicted RBP13.65□□□□□ -0.22
CLN3-251ENST00000636853 CHST6Q9GZX3 395 aa13.65□□□□□ -0.22
CLN3-251ENST00000636853 ASCL3Q9NQ33 180 aa13.65□□□□□ -0.22
CLN3-251ENST00000636853 DLL4Q9NR61 685 aa13.65□□□□□ -0.22
CLN3-251ENST00000636853 FAM86C1Q9NVL1 165 aa13.65□□□□□ -0.22
CLN3-251ENST00000636853 CREBL2O60519 120 aaPredicted RBP13.64□□□□□ -0.23
CLN3-251ENST00000636853 RRASP10301 218 aa13.64□□□□□ -0.23
CLN3-251ENST00000636853 FCGR2AP12318 317 aa13.64□□□□□ -0.23
CLN3-251ENST00000636853 CD82P27701 267 aa13.64□□□□□ -0.23
CLN3-251ENST00000636853 PTGFRP43088 359 aa13.64□□□□□ -0.23
CLN3-251ENST00000636853 FOXG1P55316 489 aaPredicted RBP13.64□□□□□ -0.23
CLN3-251ENST00000636853 SLC10A1Q14973 349 aa13.64□□□□□ -0.23
CLN3-251ENST00000636853 RNFT1Q5M7Z0 435 aa13.64□□□□□ -0.23
CLN3-251ENST00000636853 ZNF626Q68DY1 528 aa13.64□□□□□ -0.23
CLN3-251ENST00000636853 OR52W1Q6IF63 320 aa13.64□□□□□ -0.23
CLN3-251ENST00000636853 SEZ6L2Q6UXD5 910 aa13.64□□□□□ -0.23
CLN3-251ENST00000636853 PNLDC1Q8NA58 520 aaKnown RBP13.64□□□□□ -0.23
CLN3-251ENST00000636853 ZFP62Q8NB50 900 aaPredicted RBP13.64□□□□□ -0.23
CLN3-251ENST00000636853 SEMA6DQ8NFY4 1073 aa13.64□□□□□ -0.23
CLN3-251ENST00000636853 CHIAQ9BZP6 476 aa13.64□□□□□ -0.23
CLN3-251ENST00000636853 CLEC4MQ9H2X3 399 aaPredicted RBP13.64□□□□□ -0.23
CLN3-251ENST00000636853 ZNF552Q9H707 407 aaPredicted RBP13.64□□□□□ -0.23
CLN3-251ENST00000636853 EXO5Q9H790 373 aa13.64□□□□□ -0.23
CLN3-251ENST00000636853 GPN1Q9HCN4 374 aaPredicted RBP13.64□□□□□ -0.23
CLN3-251ENST00000636853 GPR173Q9NS66 373 aa13.64□□□□□ -0.23
CLN3-251ENST00000636853 A0A096LPE4 126 aa13.64□□□□□ -0.23
CLN3-251ENST00000636853 A0A1W2PPZ6 126 aa13.64□□□□□ -0.23
CLN3-251ENST00000636853 I3L521 148 aa13.64□□□□□ -0.23
CLN3-251ENST00000636853 MELTFP08582 738 aa13.64□□□□□ -0.23
CLN3-251ENST00000636853 MMP7P09237 267 aaPredicted RBP13.64□□□□□ -0.23
CLN3-251ENST00000636853 ZNF735P0CB33 412 aa13.64□□□□□ -0.23
CLN3-251ENST00000636853 PCBD1P61457 104 aa13.64□□□□□ -0.23
CLN3-251ENST00000636853 ARF1P84077 181 aaKnown RBP13.64□□□□□ -0.23
CLN3-251ENST00000636853 AANATQ16613 207 aa13.64□□□□□ -0.23
CLN3-251ENST00000636853 NKPD1Q17RQ9 610 aa13.64□□□□□ -0.23
CLN3-251ENST00000636853 KRTAP27-1Q3LI81 207 aa13.64□□□□□ -0.23
CLN3-251ENST00000636853 ZNF766Q5HY98 468 aa13.64□□□□□ -0.23
CLN3-251ENST00000636853 PLAC9Q5JTB6 97 aa13.64□□□□□ -0.23
CLN3-251ENST00000636853 BPIFB2Q8N4F0 458 aa13.64□□□□□ -0.23
CLN3-251ENST00000636853 OR10K1Q8NGX5 313 aa13.64□□□□□ -0.23
CLN3-251ENST00000636853 CA10Q9NS85 328 aa13.64□□□□□ -0.23
CLN3-251ENST00000636853 MGAT4CQ9UBM8 478 aa13.64□□□□□ -0.23
CLN3-251ENST00000636853 UBQLN2Q9UHD9 624 aa13.64□□□□□ -0.23
CLN3-251ENST00000636853 SSX5O60225 188 aa13.63□□□□□ -0.23
CLN3-251ENST00000636853 TSC22D2O75157 780 aa13.63□□□□□ -0.23
CLN3-251ENST00000636853 SCGNO76038 276 aa13.63□□□□□ -0.23
CLN3-251ENST00000636853 FARS2O95363 451 aaKnown RBP13.63□□□□□ -0.23
CLN3-251ENST00000636853 CD74P04233 296 aa13.63□□□□□ -0.23
CLN3-251ENST00000636853 PABPC1L2AQ5JQF8 200 aa13.63□□□□□ -0.23
CLN3-251ENST00000636853 NLRC3Q7RTR2 1065 aa13.63□□□□□ -0.23
CLN3-251ENST00000636853 CD163Q86VB7 1156 aa13.63□□□□□ -0.23
CLN3-251ENST00000636853 COMMD7Q86VX2 200 aa13.63□□□□□ -0.23
CLN3-251ENST00000636853 TNFAIP8L1Q8WVP5 186 aa13.63□□□□□ -0.23
CLN3-251ENST00000636853 SLC6A7Q99884 636 aa13.63□□□□□ -0.23
CLN3-251ENST00000636853 LDAHQ9H6V9 325 aa13.63□□□□□ -0.23
CLN3-251ENST00000636853 KCNK7Q9Y2U2 307 aa13.63□□□□□ -0.23
CLN3-251ENST00000636853 NPTNQ9Y639 398 aa13.63□□□□□ -0.23
CLN3-251ENST00000636853 URB1O60287 2271 aaKnown RBP13.63□□□□□ -0.23
CLN3-251ENST00000636853 SNRPGP15A8MWD9 76 aa13.62□□□□□ -0.23
CLN3-251ENST00000636853 TRIM77I1YAP6 450 aa13.62□□□□□ -0.23
CLN3-251ENST00000636853 ZNHIT1O43257 154 aa13.62□□□□□ -0.23
CLN3-251ENST00000636853 CHRM2P08172 466 aa13.62□□□□□ -0.23
CLN3-251ENST00000636853 WT1P19544 449 aaPredicted RBP13.62□□□□□ -0.23
CLN3-251ENST00000636853 CCL11P51671 97 aa13.62□□□□□ -0.23
CLN3-251ENST00000636853 RRADP55042 308 aa13.62□□□□□ -0.23
CLN3-251ENST00000636853 TMEM50BP56557 158 aa13.62□□□□□ -0.23
CLN3-251ENST00000636853 TCF15Q12870 199 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms