RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 LPLP06858 475 aa11.57□□□□□ -0.56
CLN3-249ENST00000636685 RBMY1DP0C7P1 496 aaKnown RBP11.57□□□□□ -0.56
CLN3-249ENST00000636685 CCL3L1P16619 93 aa11.57□□□□□ -0.56
CLN3-249ENST00000636685 CDKN2AP42771 156 aaKnown RBP11.57□□□□□ -0.56
CLN3-249ENST00000636685 SLC25A1P53007 311 aa11.57□□□□□ -0.56
CLN3-249ENST00000636685 ZBED5Q49AG3 693 aa11.57□□□□□ -0.56
CLN3-249ENST00000636685 TNFAIP8L3Q5GJ75 292 aa11.57□□□□□ -0.56
CLN3-249ENST00000636685 SLC26A10Q8NG04 563 aa11.57□□□□□ -0.56
CLN3-249ENST00000636685 MALSU1Q96EH3 234 aa11.57□□□□□ -0.56
CLN3-249ENST00000636685 P2RX4Q99571 388 aa11.57□□□□□ -0.56
CLN3-249ENST00000636685 TLNRD1Q9H1K6 362 aa11.57□□□□□ -0.56
CLN3-249ENST00000636685 KAT8Q9H7Z6 458 aaKnown RBP11.57□□□□□ -0.56
CLN3-249ENST00000636685 SSU72Q9NP77 194 aaKnown RBP11.57□□□□□ -0.56
CLN3-249ENST00000636685 KCNK9Q9NPC2 374 aa11.57□□□□□ -0.56
CLN3-249ENST00000636685 RHCGQ9UBD6 479 aa11.57□□□□□ -0.56
CLN3-249ENST00000636685 BAG5Q9UL15 447 aa11.57□□□□□ -0.56
CLN3-249ENST00000636685 N6AMT1Q9Y5N5 214 aa11.57□□□□□ -0.56
CLN3-249ENST00000636685 SH2D7A6NKC9 451 aaPredicted RBP11.56□□□□□ -0.56
CLN3-249ENST00000636685 OR2AT4A6NND4 320 aa11.56□□□□□ -0.56
CLN3-249ENST00000636685 TIPRLO75663 272 aa11.56□□□□□ -0.56
CLN3-249ENST00000636685 MYCNOSP40205 109 aa11.56□□□□□ -0.56
CLN3-249ENST00000636685 DYNLT3P51808 116 aa11.56□□□□□ -0.56
CLN3-249ENST00000636685 SLC18A1P54219 525 aa11.56□□□□□ -0.56
CLN3-249ENST00000636685 WDR4P57081 412 aaKnown RBP11.56□□□□□ -0.56
CLN3-249ENST00000636685 RPL23AP62750 156 aaKnown RBP11.56□□□□□ -0.56
CLN3-249ENST00000636685 SPIBQ01892 262 aa11.56□□□□□ -0.56
CLN3-249ENST00000636685 VMACQ2NL98 169 aa11.56□□□□□ -0.56
CLN3-249ENST00000636685 AGKQ53H12 422 aa11.56□□□□□ -0.56
CLN3-249ENST00000636685 TMEM200BQ69YZ2 307 aa11.56□□□□□ -0.56
CLN3-249ENST00000636685 GPR139Q6DWJ6 353 aa11.56□□□□□ -0.56
CLN3-249ENST00000636685 PIGWQ7Z7B1 504 aa11.56□□□□□ -0.56
CLN3-249ENST00000636685 DHDDSQ86SQ9 333 aa11.56□□□□□ -0.56
CLN3-249ENST00000636685 OR6V1Q8N148 313 aa11.56□□□□□ -0.56
CLN3-249ENST00000636685 OR10Z1Q8NGY1 313 aa11.56□□□□□ -0.56
CLN3-249ENST00000636685 OR2AJ1Q8NGZ0 328 aa11.56□□□□□ -0.56
CLN3-249ENST00000636685 OR10A6Q8NH74 314 aa11.56□□□□□ -0.56
CLN3-249ENST00000636685 RPL3LQ92901 407 aaKnown RBP11.56□□□□□ -0.56
CLN3-249ENST00000636685 SPTSSAQ969W0 71 aa11.56□□□□□ -0.56
CLN3-249ENST00000636685 DUX3Q96PT4 197 aa11.56□□□□□ -0.56
CLN3-249ENST00000636685 CGREF1Q99674 301 aa11.56□□□□□ -0.56
CLN3-249ENST00000636685 SRA1Q9HD15 236 aaKnown RBP11.56□□□□□ -0.56
CLN3-249ENST00000636685 CYB5R1Q9UHQ9 305 aa11.56□□□□□ -0.56
CLN3-249ENST00000636685 B9D1Q9UPM9 204 aa11.56□□□□□ -0.56
CLN3-249ENST00000636685 TBL2Q9Y4P3 447 aaKnown RBP11.56□□□□□ -0.56
CLN3-249ENST00000636685 IER3IP1Q9Y5U9 82 aa11.56□□□□□ -0.56
CLN3-249ENST00000636685 IGKV1D-17A0A075B6S4 117 aa11.55□□□□□ -0.56
CLN3-249ENST00000636685 ODF3BA8MYP8 253 aa11.55□□□□□ -0.56
CLN3-249ENST00000636685 NDUFAB1O14561 156 aa11.55□□□□□ -0.56
CLN3-249ENST00000636685 SLC2A1P11166 492 aa11.55□□□□□ -0.56
CLN3-249ENST00000636685 CRABP1P29762 137 aa11.55□□□□□ -0.56
CLN3-249ENST00000636685 YAP1P46937 504 aaKnown RBP11.55□□□□□ -0.56
CLN3-249ENST00000636685 CAPZA1P52907 286 aa11.55□□□□□ -0.56
CLN3-249ENST00000636685 RAB25P57735 213 aa11.55□□□□□ -0.56
CLN3-249ENST00000636685 NFYCQ13952 458 aa11.55□□□□□ -0.56
CLN3-249ENST00000636685 ABCA11PQ4W5N1 156 aa11.55□□□□□ -0.56
CLN3-249ENST00000636685 DNM1P34Q6PK57 102 aa11.55□□□□□ -0.56
CLN3-249ENST00000636685 TBPL2Q6SJ96 375 aa11.55□□□□□ -0.56
CLN3-249ENST00000636685 OR2W3Q7Z3T1 314 aa11.55□□□□□ -0.56
CLN3-249ENST00000636685 ADCK1Q86TW2 530 aa11.55□□□□□ -0.56
CLN3-249ENST00000636685 ANKRD42Q8N9B4 389 aa11.55□□□□□ -0.56
CLN3-249ENST00000636685 RBMXL1Q96E39 390 aaKnown RBP11.55□□□□□ -0.56
CLN3-249ENST00000636685 PRRC1Q96M27 445 aa11.55□□□□□ -0.56
CLN3-249ENST00000636685 NRIP3Q9NQ35 241 aa11.55□□□□□ -0.56
CLN3-249ENST00000636685 NLKQ9UBE8 527 aa11.55□□□□□ -0.56
CLN3-249ENST00000636685 HILPDAQ9Y5L2 63 aa11.55□□□□□ -0.56
CLN3-249ENST00000636685 NUDT19A8MXV4 375 aa11.54□□□□□ -0.56
CLN3-249ENST00000636685 FAM107AO95990 144 aa11.54□□□□□ -0.56
CLN3-249ENST00000636685 PSG2P11465 335 aa11.54□□□□□ -0.56
CLN3-249ENST00000636685 AZGP1P25311 298 aaKnown RBP11.54□□□□□ -0.56
CLN3-249ENST00000636685 GNALP38405 381 aa11.54□□□□□ -0.56
CLN3-249ENST00000636685 DDOSTP39656 456 aa11.54□□□□□ -0.56
CLN3-249ENST00000636685 GZMMP51124 257 aa11.54□□□□□ -0.56
CLN3-249ENST00000636685 RPL31P62899 125 aaKnown RBP11.54□□□□□ -0.56
CLN3-249ENST00000636685 SLC34A1Q06495 639 aa11.54□□□□□ -0.56
CLN3-249ENST00000636685 SLC36A3Q495N2 470 aa11.54□□□□□ -0.56
CLN3-249ENST00000636685 EPGNQ6UW88 154 aa11.54□□□□□ -0.56
CLN3-249ENST00000636685 OVCH2Q7RTZ1 564 aa11.54□□□□□ -0.56
CLN3-249ENST00000636685 OR4M1Q8NGD0 313 aa11.54□□□□□ -0.56
CLN3-249ENST00000636685 USE1Q9NZ43 259 aa11.54□□□□□ -0.56
CLN3-249ENST00000636685 ZNF222Q9UK12 451 aa11.54□□□□□ -0.56
CLN3-249ENST00000636685 SMAD5-AS1Q9Y6J3 95 aa11.54□□□□□ -0.56
CLN3-249ENST00000636685 A0A087WUU8 490 aa11.53□□□□□ -0.56
CLN3-249ENST00000636685 hCG_1809904A0A1W2PP81 198 aa11.53□□□□□ -0.56
CLN3-249ENST00000636685 A0A1W2PPE2 198 aa11.53□□□□□ -0.56
CLN3-249ENST00000636685 A0A1W2PPH5 198 aa11.53□□□□□ -0.56
CLN3-249ENST00000636685 A0A1W2PR64 198 aa11.53□□□□□ -0.56
CLN3-249ENST00000636685 A0A1W2PRV1 198 aa11.53□□□□□ -0.56
CLN3-249ENST00000636685 FAM90A22PA8MWA6 464 aa11.53□□□□□ -0.56
CLN3-249ENST00000636685 J3KTA2 159 aa11.53□□□□□ -0.56
CLN3-249ENST00000636685 JTBO76095 146 aa11.53□□□□□ -0.56
CLN3-249ENST00000636685 NDUFB2O95178 105 aa11.53□□□□□ -0.56
CLN3-249ENST00000636685 SNRNP70P08621 437 aaKnown RBP11.53□□□□□ -0.56
CLN3-249ENST00000636685 OTX1P32242 354 aaPredicted RBP11.53□□□□□ -0.56
CLN3-249ENST00000636685 RPS27P42677 84 aaKnown RBP11.53□□□□□ -0.56
CLN3-249ENST00000636685 ENTPD1P49961 510 aa11.53□□□□□ -0.56
CLN3-249ENST00000636685 PRKXP51817 358 aa11.53□□□□□ -0.56
CLN3-249ENST00000636685 OR12D2P58182 307 aa11.53□□□□□ -0.56
CLN3-249ENST00000636685 FAM3AP98173 230 aa11.53□□□□□ -0.56
CLN3-249ENST00000636685 ZNF273Q14593 569 aa11.53□□□□□ -0.56
CLN3-249ENST00000636685 ZNF626Q68DY1 528 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms