RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 RHBDD3Q9Y3P4 386 aa15.31■□□□□ 0.04
CLN3-243ENST00000635973 CACNG2Q9Y698 323 aa15.31■□□□□ 0.04
CLN3-243ENST00000635973 ZNF816-ZNF321PA0A0X1KG74 233 aa15.3■□□□□ 0.04
CLN3-243ENST00000635973 ANXA2P2A6NMY6 339 aa15.3■□□□□ 0.04
CLN3-243ENST00000635973 H3BSH0 61 aa15.3■□□□□ 0.04
CLN3-243ENST00000635973 SLC1A7O00341 560 aa15.3■□□□□ 0.04
CLN3-243ENST00000635973 SYT7O43581 403 aa15.3■□□□□ 0.04
CLN3-243ENST00000635973 RP2O75695 350 aa15.3■□□□□ 0.04
CLN3-243ENST00000635973 DHRS3O75911 302 aa15.3■□□□□ 0.04
CLN3-243ENST00000635973 LIMS3P0CW19 117 aa15.3■□□□□ 0.04
CLN3-243ENST00000635973 LIMS4P0CW20 117 aa15.3■□□□□ 0.04
CLN3-243ENST00000635973 IL2RGP31785 369 aa15.3■□□□□ 0.04
CLN3-243ENST00000635973 ETV1P50549 477 aa15.3■□□□□ 0.04
CLN3-243ENST00000635973 GBX2P52951 348 aaPredicted RBP15.3■□□□□ 0.04
CLN3-243ENST00000635973 SLC3A1Q07837 685 aa15.3■□□□□ 0.04
CLN3-243ENST00000635973 RIPPLY1Q0D2K3 151 aa15.3■□□□□ 0.04
CLN3-243ENST00000635973 MRPL28Q13084 256 aaKnown RBP15.3■□□□□ 0.04
CLN3-243ENST00000635973 PRSS35Q8N3Z0 413 aa15.3■□□□□ 0.04
CLN3-243ENST00000635973 SPERTQ8NA61 448 aa15.3■□□□□ 0.04
CLN3-243ENST00000635973 OR2G2Q8NGZ5 317 aa15.3■□□□□ 0.04
CLN3-243ENST00000635973 PELI1Q96FA3 418 aa15.3■□□□□ 0.04
CLN3-243ENST00000635973 TIMD4Q96H15 378 aa15.3■□□□□ 0.04
CLN3-243ENST00000635973 ABCB9Q9NP78 766 aa15.3■□□□□ 0.04
CLN3-243ENST00000635973 PSORS1C1Q9UIG5 152 aa15.3■□□□□ 0.04
CLN3-243ENST00000635973 PIGLQ9Y2B2 252 aa15.3■□□□□ 0.04
CLN3-243ENST00000635973 A0A1B0GWJ7 208 aa15.29■□□□□ 0.04
CLN3-243ENST00000635973 ZNF850A8MQ14 1090 aa15.29■□□□□ 0.04
CLN3-243ENST00000635973 IGLV3-1P01715 115 aa15.29■□□□□ 0.04
CLN3-243ENST00000635973 CD200P41217 278 aa15.29■□□□□ 0.04
CLN3-243ENST00000635973 KIR3DL2P43630 455 aa15.29■□□□□ 0.04
CLN3-243ENST00000635973 CDH15P55291 814 aa15.29■□□□□ 0.04
CLN3-243ENST00000635973 TMEM33P57088 247 aa15.29■□□□□ 0.04
CLN3-243ENST00000635973 PRDX4Q13162 271 aa15.29■□□□□ 0.04
CLN3-243ENST00000635973 PEG10Q86TG7 708 aaKnown RBP15.29■□□□□ 0.04
CLN3-243ENST00000635973 MOGAT3Q86VF5 341 aa15.29■□□□□ 0.04
CLN3-243ENST00000635973 ZDHHC23Q8IYP9 409 aa15.29■□□□□ 0.04
CLN3-243ENST00000635973 HAVCR2Q8TDQ0 301 aa15.29■□□□□ 0.04
CLN3-243ENST00000635973 ITFG2Q969R8 447 aa15.29■□□□□ 0.04
CLN3-243ENST00000635973 HIST1H2AAQ96QV6 131 aa15.29■□□□□ 0.04
CLN3-243ENST00000635973 MICU1Q9BPX6 476 aa15.29■□□□□ 0.04
CLN3-243ENST00000635973 NARFLQ9H6Q4 476 aa15.29■□□□□ 0.04
CLN3-243ENST00000635973 C14orf119Q9NWQ9 140 aa15.29■□□□□ 0.04
CLN3-243ENST00000635973 ENPP5Q9UJA9 477 aa15.29■□□□□ 0.04
CLN3-243ENST00000635973 CAB39Q9Y376 341 aaPredicted RBP15.29■□□□□ 0.04
CLN3-243ENST00000635973 LOC107986453A0A1B0GWG9 222 aa15.28■□□□□ 0.04
CLN3-243ENST00000635973 B4DSR2 109 aa15.28■□□□□ 0.04
CLN3-243ENST00000635973 PTGES3LE9PB15 166 aa15.28■□□□□ 0.04
CLN3-243ENST00000635973 MYL12BO14950 172 aa15.28■□□□□ 0.04
CLN3-243ENST00000635973 CST4P01036 141 aa15.28■□□□□ 0.04
CLN3-243ENST00000635973 FAHP16930 419 aa15.28■□□□□ 0.04
CLN3-243ENST00000635973 NANOS3P60323 173 aaKnown RBP15.28■□□□□ 0.04
CLN3-243ENST00000635973 ALKBH1Q13686 389 aaKnown RBP15.28■□□□□ 0.04
CLN3-243ENST00000635973 AVPI1Q5T686 147 aa15.28■□□□□ 0.04
CLN3-243ENST00000635973 ZBTB37Q5TC79 503 aa15.28■□□□□ 0.04
CLN3-243ENST00000635973 OR2G6Q5TZ20 316 aa15.28■□□□□ 0.04
CLN3-243ENST00000635973 PRAMEF6Q5VXH4 476 aa15.28■□□□□ 0.04
CLN3-243ENST00000635973 FDX2Q6P4F2 183 aa15.28■□□□□ 0.04
CLN3-243ENST00000635973 KCTD8Q6ZWB6 473 aa15.28■□□□□ 0.04
CLN3-243ENST00000635973 EGFL6Q8IUX8 553 aa15.28■□□□□ 0.04
CLN3-243ENST00000635973 CELF2-AS1Q8N7Q2 184 aa15.28■□□□□ 0.04
CLN3-243ENST00000635973 OR11L1Q8NGX0 322 aa15.28■□□□□ 0.04
CLN3-243ENST00000635973 MYDGFQ969H8 173 aa15.28■□□□□ 0.04
CLN3-243ENST00000635973 ZNF649Q9BS31 505 aa15.28■□□□□ 0.04
CLN3-243ENST00000635973 FN3KRPQ9HA64 309 aa15.28■□□□□ 0.04
CLN3-243ENST00000635973 GCM1Q9NP62 436 aa15.28■□□□□ 0.04
CLN3-243ENST00000635973 TMEM106BQ9NUM4 274 aa15.28■□□□□ 0.04
CLN3-243ENST00000635973 UFSP2Q9NUQ7 469 aa15.28■□□□□ 0.04
CLN3-243ENST00000635973 FRRS1LQ9P0K9 344 aa15.28■□□□□ 0.04
CLN3-243ENST00000635973 TPRKBQ9Y3C4 175 aa15.28■□□□□ 0.04
CLN3-243ENST00000635973 MPC1Q9Y5U8 109 aa15.28■□□□□ 0.04
CLN3-243ENST00000635973 A0A1B0GTI1 187 aa15.27■□□□□ 0.04
CLN3-243ENST00000635973 ISPDA4D126 451 aa15.27■□□□□ 0.04
CLN3-243ENST00000635973 A6NLC8 198 aa15.27■□□□□ 0.04
CLN3-243ENST00000635973 LRRC30A6NM36 301 aa15.27■□□□□ 0.04
CLN3-243ENST00000635973 GRPP07492 148 aa15.27■□□□□ 0.04
CLN3-243ENST00000635973 CCDC159P0C7I6 412 aa15.27■□□□□ 0.04
CLN3-243ENST00000635973 IRF2P14316 349 aa15.27■□□□□ 0.04
CLN3-243ENST00000635973 ZNF12P17014 697 aa15.27■□□□□ 0.04
CLN3-243ENST00000635973 CCL1P22362 96 aa15.27■□□□□ 0.04
CLN3-243ENST00000635973 CCR9P51686 369 aa15.27■□□□□ 0.04
CLN3-243ENST00000635973 DVL1P1P54792 670 aaPredicted RBP15.27■□□□□ 0.04
CLN3-243ENST00000635973 MVKQ03426 396 aa15.27■□□□□ 0.04
CLN3-243ENST00000635973 MAB21L1Q13394 359 aa15.27■□□□□ 0.04
CLN3-243ENST00000635973 KRTAP24-1Q3LI83 254 aa15.27■□□□□ 0.04
CLN3-243ENST00000635973 TMEM244Q5VVB8 128 aa15.27■□□□□ 0.04
CLN3-243ENST00000635973 GLCCI1Q86VQ1 547 aa15.27■□□□□ 0.04
CLN3-243ENST00000635973 ZNF676Q8N7Q3 588 aa15.27■□□□□ 0.04
CLN3-243ENST00000635973 CCDC54Q8NEL0 328 aa15.27■□□□□ 0.04
CLN3-243ENST00000635973 OR14K1Q8NGZ2 314 aa15.27■□□□□ 0.04
CLN3-243ENST00000635973 ZNF420Q8TAQ5 688 aaPredicted RBP15.27■□□□□ 0.04
CLN3-243ENST00000635973 RAB1CQ92928 201 aa15.27■□□□□ 0.04
CLN3-243ENST00000635973 RTL8AQ9BWD3 113 aa15.27■□□□□ 0.04
CLN3-243ENST00000635973 COMMD4Q9H0A8 199 aa15.27■□□□□ 0.04
CLN3-243ENST00000635973 CLEC2DQ9UHP7 191 aa15.27■□□□□ 0.04
CLN3-243ENST00000635973 V9GYS6 101 aa15.27■□□□□ 0.04
CLN3-243ENST00000635973 DHRS7CA6NNS2 312 aa15.26■□□□□ 0.03
CLN3-243ENST00000635973 IFNL4K9M1U5 179 aa15.26■□□□□ 0.03
CLN3-243ENST00000635973 C21orf33P30042 268 aaPredicted RBP15.26■□□□□ 0.03
CLN3-243ENST00000635973 GATA4P43694 442 aa15.26■□□□□ 0.03
CLN3-243ENST00000635973 HNRNPA0Q13151 305 aaKnown RBP15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms