RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 SAP25Q8TEE9 199 aa11.21□□□□□ -0.61
LINC00540-203ENST00000631321 PP6455Q8WZ26 134 aa11.21□□□□□ -0.61
LINC00540-203ENST00000631321 C10orf35Q96D05 121 aa11.21□□□□□ -0.61
LINC00540-203ENST00000631321 LRRC46Q96FV0 321 aa11.21□□□□□ -0.61
LINC00540-203ENST00000631321 CYYR1Q96J86 154 aa11.21□□□□□ -0.61
LINC00540-203ENST00000631321 AKIRIN1Q9H9L7 192 aaPredicted RBP11.21□□□□□ -0.61
LINC00540-203ENST00000631321 ZNF160Q9HCG1 818 aa11.21□□□□□ -0.61
LINC00540-203ENST00000631321 NXT1Q9UKK6 140 aaKnown RBP11.21□□□□□ -0.61
LINC00540-203ENST00000631321 PRUNE2Q8WUY3 3088 aa11.21□□□□□ -0.61
LINC00540-203ENST00000631321 SERPINE3A8MV23 424 aa11.21□□□□□ -0.61
LINC00540-203ENST00000631321 EIF1BO60739 113 aaKnown RBP11.21□□□□□ -0.61
LINC00540-203ENST00000631321 DHRS3O75911 302 aa11.21□□□□□ -0.61
LINC00540-203ENST00000631321 CD79AP11912 226 aa11.21□□□□□ -0.61
LINC00540-203ENST00000631321 FGF5P12034 268 aa11.21□□□□□ -0.61
LINC00540-203ENST00000631321 RPS2P15880 293 aaKnown RBP11.21□□□□□ -0.61
LINC00540-203ENST00000631321 ARFRP1Q13795 201 aa11.21□□□□□ -0.61
LINC00540-203ENST00000631321 ARL6IP1Q15041 203 aa11.21□□□□□ -0.61
LINC00540-203ENST00000631321 PPA1Q15181 289 aa11.21□□□□□ -0.61
LINC00540-203ENST00000631321 SURF2Q15527 256 aaPredicted RBP11.21□□□□□ -0.61
LINC00540-203ENST00000631321 STK11Q15831 433 aa11.21□□□□□ -0.61
LINC00540-203ENST00000631321 RSPO1Q2MKA7 263 aaPredicted RBP11.21□□□□□ -0.61
LINC00540-203ENST00000631321 ANKRD55Q3KP44 614 aa11.21□□□□□ -0.61
LINC00540-203ENST00000631321 PHYHD1Q5SRE7 291 aa11.21□□□□□ -0.61
LINC00540-203ENST00000631321 PRAMEF20Q5VT98 475 aa11.21□□□□□ -0.61
LINC00540-203ENST00000631321 PRSS54Q6PEW0 395 aa11.21□□□□□ -0.61
LINC00540-203ENST00000631321 UNQ6126/PRO20091Q6UXV3 157 aa11.21□□□□□ -0.61
LINC00540-203ENST00000631321 BAP18Q8IXM2 172 aa11.21□□□□□ -0.61
LINC00540-203ENST00000631321 TMEM123Q8N131 208 aa11.21□□□□□ -0.61
LINC00540-203ENST00000631321 OR1S2Q8NGQ3 325 aa11.21□□□□□ -0.61
LINC00540-203ENST00000631321 RRNAD1Q96FB5 475 aaKnown RBP11.21□□□□□ -0.61
LINC00540-203ENST00000631321 PECRQ9BY49 303 aa11.21□□□□□ -0.61
LINC00540-203ENST00000631321 ASCC3Q8N3C0 2202 aaKnown RBP11.21□□□□□ -0.62
LINC00540-203ENST00000631321 VCANP13611 3396 aa11.21□□□□□ -0.62
LINC00540-203ENST00000631321 VAMP5O95183 116 aa11.2□□□□□ -0.62
LINC00540-203ENST00000631321 HPNP05981 417 aa11.2□□□□□ -0.62
LINC00540-203ENST00000631321 CD63P08962 238 aa11.2□□□□□ -0.62
LINC00540-203ENST00000631321 GUCA1AP43080 201 aaPredicted RBP11.2□□□□□ -0.62
LINC00540-203ENST00000631321 MC2RQ01718 297 aa11.2□□□□□ -0.62
LINC00540-203ENST00000631321 IL15RAQ13261 267 aa11.2□□□□□ -0.62
LINC00540-203ENST00000631321 UBE2V2Q15819 145 aa11.2□□□□□ -0.62
LINC00540-203ENST00000631321 RTL6Q6ICC9 239 aa11.2□□□□□ -0.62
LINC00540-203ENST00000631321 LIN37Q96GY3 246 aaPredicted RBP11.2□□□□□ -0.62
LINC00540-203ENST00000631321 ANGPTL4Q9BY76 406 aa11.2□□□□□ -0.62
LINC00540-203ENST00000631321 CHST5Q9GZS9 411 aa11.2□□□□□ -0.62
LINC00540-203ENST00000631321 MYO15AQ9UKN7 3530 aa11.2□□□□□ -0.62
LINC00540-203ENST00000631321 FIGNL2A6NMB9 653 aa11.2□□□□□ -0.62
LINC00540-203ENST00000631321 KCNAB3O43448 404 aa11.2□□□□□ -0.62
LINC00540-203ENST00000631321 OR3A2P47893 321 aa11.2□□□□□ -0.62
LINC00540-203ENST00000631321 SLC6A9P48067 706 aa11.2□□□□□ -0.62
LINC00540-203ENST00000631321 DHPSP49366 369 aaPredicted RBP11.2□□□□□ -0.62
LINC00540-203ENST00000631321 ZNF84P51523 738 aa11.2□□□□□ -0.62
LINC00540-203ENST00000631321 SUCLG1P53597 346 aaKnown RBP11.2□□□□□ -0.62
LINC00540-203ENST00000631321 SNU13P55769 128 aaKnown RBP11.2□□□□□ -0.62
LINC00540-203ENST00000631321 SLC9A3R2Q15599 337 aa11.2□□□□□ -0.62
LINC00540-203ENST00000631321 OPN5Q6U736 354 aa11.2□□□□□ -0.62
LINC00540-203ENST00000631321 DTX1Q86Y01 620 aa11.2□□□□□ -0.62
LINC00540-203ENST00000631321 AQP10Q96PS8 301 aa11.2□□□□□ -0.62
LINC00540-203ENST00000631321 AIFM2Q9BRQ8 373 aa11.2□□□□□ -0.62
LINC00540-203ENST00000631321 SH2D2AQ9NP31 389 aa11.2□□□□□ -0.62
LINC00540-203ENST00000631321 OCIAD1Q9NX40 245 aa11.2□□□□□ -0.62
LINC00540-203ENST00000631321 CACNA1EQ15878 2313 aa11.2□□□□□ -0.62
LINC00540-203ENST00000631321 IGHV1-45A0A0A0MS14 117 aa11.19□□□□□ -0.62
LINC00540-203ENST00000631321 NUDT19A8MXV4 375 aa11.19□□□□□ -0.62
LINC00540-203ENST00000631321 STMND1H3BQB6 276 aa11.19□□□□□ -0.62
LINC00540-203ENST00000631321 ADAP1O75689 374 aa11.19□□□□□ -0.62
LINC00540-203ENST00000631321 LIFP15018 202 aa11.19□□□□□ -0.62
LINC00540-203ENST00000631321 BLVRBP30043 206 aaPredicted RBP11.19□□□□□ -0.62
LINC00540-203ENST00000631321 CSNK2A1P68400 391 aaPredicted RBP11.19□□□□□ -0.62
LINC00540-203ENST00000631321 POC1AQ8NBT0 407 aa11.19□□□□□ -0.62
LINC00540-203ENST00000631321 CSNK2A3Q8NEV1 391 aa11.19□□□□□ -0.62
LINC00540-203ENST00000631321 ROBO4Q8WZ75 1007 aa11.19□□□□□ -0.62
LINC00540-203ENST00000631321 HAS2Q92819 552 aa11.19□□□□□ -0.62
LINC00540-203ENST00000631321 EMG1Q92979 244 aaKnown RBP11.19□□□□□ -0.62
LINC00540-203ENST00000631321 INTS12Q96CB8 462 aaKnown RBP11.19□□□□□ -0.62
LINC00540-203ENST00000631321 IMMP1LQ96LU5 166 aa11.19□□□□□ -0.62
LINC00540-203ENST00000631321 ST6GALNAC5Q9BVH7 336 aa11.19□□□□□ -0.62
LINC00540-203ENST00000631321 ZNF700Q9H0M5 742 aa11.19□□□□□ -0.62
LINC00540-203ENST00000631321 PROK2Q9HC23 129 aa11.19□□□□□ -0.62
LINC00540-203ENST00000631321 DNAJB11Q9UBS4 358 aa11.19□□□□□ -0.62
LINC00540-203ENST00000631321 FOXD3Q9UJU5 478 aaPredicted RBP11.19□□□□□ -0.62
LINC00540-203ENST00000631321 TMEM218A2RU14 115 aa11.19□□□□□ -0.62
LINC00540-203ENST00000631321 OR5H15A6NDH6 313 aa11.19□□□□□ -0.62
LINC00540-203ENST00000631321 RRP8O43159 456 aaKnown RBP11.19□□□□□ -0.62
LINC00540-203ENST00000631321 DHHO43323 396 aa11.19□□□□□ -0.62
LINC00540-203ENST00000631321 ZIC3O60481 467 aa11.19□□□□□ -0.62
LINC00540-203ENST00000631321 APOC1P02654 83 aa11.19□□□□□ -0.62
LINC00540-203ENST00000631321 DSCR4P56555 118 aaPredicted RBP11.19□□□□□ -0.62
LINC00540-203ENST00000631321 LYSMD4Q5XG99 296 aa11.19□□□□□ -0.62
LINC00540-203ENST00000631321 OR9K2Q8NGE7 335 aa11.19□□□□□ -0.62
LINC00540-203ENST00000631321 NAT6Q93015 286 aa11.19□□□□□ -0.62
LINC00540-203ENST00000631321 C2orf50Q96LR7 162 aa11.19□□□□□ -0.62
LINC00540-203ENST00000631321 ZNF385AQ96PM9 386 aaKnown RBP11.19□□□□□ -0.62
LINC00540-203ENST00000631321 NAA11Q9BSU3 229 aaPredicted RBP11.19□□□□□ -0.62
LINC00540-203ENST00000631321 SLC6A15Q9H2J7 730 aa11.19□□□□□ -0.62
LINC00540-203ENST00000631321 ZC4H2Q9NQZ6 224 aa11.19□□□□□ -0.62
LINC00540-203ENST00000631321 ASF1BQ9NVP2 202 aa11.19□□□□□ -0.62
LINC00540-203ENST00000631321 PCDHGA1Q9Y5H4 931 aa11.19□□□□□ -0.62
LINC00540-203ENST00000631321 F5H5K5 113 aa11.18□□□□□ -0.62
LINC00540-203ENST00000631321 NUPL2O15504 423 aaKnown RBP11.18□□□□□ -0.62
LINC00540-203ENST00000631321 ATG12O94817 140 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms