RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 IRGMA1A4Y4 181 aa17.4■□□□□ 0.38
CLN3-240ENST00000631023 P2RY10O00398 339 aa17.4■□□□□ 0.38
CLN3-240ENST00000631023 CPT2P23786 658 aa17.4■□□□□ 0.38
CLN3-240ENST00000631023 DVL1P1P54792 670 aaPredicted RBP17.4■□□□□ 0.38
CLN3-240ENST00000631023 OR12D2P58182 307 aa17.4■□□□□ 0.38
CLN3-240ENST00000631023 LHFPL3Q86UP9 236 aa17.4■□□□□ 0.38
CLN3-240ENST00000631023 GLCCI1Q86VQ1 547 aa17.4■□□□□ 0.38
CLN3-240ENST00000631023 C8orf59Q8N0T1 100 aaPredicted RBP17.4■□□□□ 0.38
CLN3-240ENST00000631023 OR1M1Q8NGA1 313 aa17.4■□□□□ 0.38
CLN3-240ENST00000631023 CNIH3Q8TBE1 160 aa17.4■□□□□ 0.38
CLN3-240ENST00000631023 OR5P3Q8WZ94 311 aa17.4■□□□□ 0.38
CLN3-240ENST00000631023 ALG8Q9BVK2 526 aa17.4■□□□□ 0.38
CLN3-240ENST00000631023 PPP1R3EQ9H7J1 279 aa17.4■□□□□ 0.38
CLN3-240ENST00000631023 A0A1B0GVI7 797 aa17.39■□□□□ 0.37
CLN3-240ENST00000631023 TMEM210A6NLX4 147 aa17.39■□□□□ 0.37
CLN3-240ENST00000631023 DHRS7CA6NNS2 312 aa17.39■□□□□ 0.37
CLN3-240ENST00000631023 J3QLW9 94 aa17.39■□□□□ 0.37
CLN3-240ENST00000631023 CRLF1O75462 422 aa17.39■□□□□ 0.37
CLN3-240ENST00000631023 IGHA1P01876 353 aa17.39■□□□□ 0.37
CLN3-240ENST00000631023 ZNF19P17023 458 aa17.39■□□□□ 0.37
CLN3-240ENST00000631023 PSMB10P40306 273 aa17.39■□□□□ 0.37
CLN3-240ENST00000631023 SMN1Q16637 294 aaKnown RBP17.39■□□□□ 0.37
CLN3-240ENST00000631023 ZNF771Q7L3S4 317 aaPredicted RBP17.39■□□□□ 0.37
CLN3-240ENST00000631023 CCDC54Q8NEL0 328 aa17.39■□□□□ 0.37
CLN3-240ENST00000631023 OR52I1Q8NGK6 324 aa17.39■□□□□ 0.37
CLN3-240ENST00000631023 RNF170Q96K19 258 aa17.39■□□□□ 0.37
CLN3-240ENST00000631023 C4orf36Q96KX1 117 aa17.39■□□□□ 0.37
CLN3-240ENST00000631023 PATZ1Q9HBE1 687 aaKnown RBP17.39■□□□□ 0.37
CLN3-240ENST00000631023 LPAR2Q9HBW0 351 aa17.39■□□□□ 0.37
CLN3-240ENST00000631023 TMEM165Q9HC07 324 aa17.39■□□□□ 0.37
CLN3-240ENST00000631023 CDC42EP3Q9UKI2 254 aa17.39■□□□□ 0.37
CLN3-240ENST00000631023 JMJD1CQ15652 2540 aa17.38■□□□□ 0.37
CLN3-240ENST00000631023 TRAV20A0A0B4J274 112 aa17.38■□□□□ 0.37
CLN3-240ENST00000631023 A0A1B0GTI1 187 aa17.38■□□□□ 0.37
CLN3-240ENST00000631023 SYT7O43581 403 aa17.38■□□□□ 0.37
CLN3-240ENST00000631023 ZNF205O95201 554 aa17.38■□□□□ 0.37
CLN3-240ENST00000631023 HTR1AP08908 422 aa17.38■□□□□ 0.37
CLN3-240ENST00000631023 FAHP16930 419 aa17.38■□□□□ 0.37
CLN3-240ENST00000631023 ZNF154Q13106 437 aa17.38■□□□□ 0.37
CLN3-240ENST00000631023 KCNJ8Q15842 424 aa17.38■□□□□ 0.37
CLN3-240ENST00000631023 ODF4Q2M2E3 257 aa17.38■□□□□ 0.37
CLN3-240ENST00000631023 CEACAM21Q3KPI0 293 aa17.38■□□□□ 0.37
CLN3-240ENST00000631023 FDX2Q6P4F2 183 aa17.38■□□□□ 0.37
CLN3-240ENST00000631023 KCTD8Q6ZWB6 473 aa17.38■□□□□ 0.37
CLN3-240ENST00000631023 SYS1Q8N2H4 156 aa17.38■□□□□ 0.37
CLN3-240ENST00000631023 OR2G2Q8NGZ5 317 aa17.38■□□□□ 0.37
CLN3-240ENST00000631023 TMEM186Q96B77 213 aa17.38■□□□□ 0.37
CLN3-240ENST00000631023 VCX3BQ9H321 246 aa17.38■□□□□ 0.37
CLN3-240ENST00000631023 FGF20Q9NP95 211 aaPredicted RBP17.38■□□□□ 0.37
CLN3-240ENST00000631023 ERVK13-1Q9NX77 482 aa17.38■□□□□ 0.37
CLN3-240ENST00000631023 LPAR3Q9UBY5 353 aa17.38■□□□□ 0.37
CLN3-240ENST00000631023 V9GYS6 101 aa17.38■□□□□ 0.37
CLN3-240ENST00000631023 H0YJX3 145 aa17.37■□□□□ 0.37
CLN3-240ENST00000631023 NRASP01111 189 aa17.37■□□□□ 0.37
CLN3-240ENST00000631023 UBCP0CG48 685 aaKnown RBP17.37■□□□□ 0.37
CLN3-240ENST00000631023 ZNF12P17014 697 aa17.37■□□□□ 0.37
CLN3-240ENST00000631023 CCL1P22362 96 aa17.37■□□□□ 0.37
CLN3-240ENST00000631023 DCKP27707 260 aa17.37■□□□□ 0.37
CLN3-240ENST00000631023 CHRFAM7AQ494W8 412 aa17.37■□□□□ 0.37
CLN3-240ENST00000631023 WDR38Q5JTN6 314 aa17.37■□□□□ 0.37
CLN3-240ENST00000631023 FAM201AQ5SY85 155 aa17.37■□□□□ 0.37
CLN3-240ENST00000631023 Q6ZSR3 168 aa17.37■□□□□ 0.37
CLN3-240ENST00000631023 ZNF826PQ6ZT77 177 aa17.37■□□□□ 0.37
CLN3-240ENST00000631023 WDR86Q86TI4 376 aa17.37■□□□□ 0.37
CLN3-240ENST00000631023 PRSS35Q8N3Z0 413 aa17.37■□□□□ 0.37
CLN3-240ENST00000631023 BOLLQ8N9W6 283 aaKnown RBP17.37■□□□□ 0.37
CLN3-240ENST00000631023 OR5A2Q8NGI9 324 aa17.37■□□□□ 0.37
CLN3-240ENST00000631023 SHARPINQ9H0F6 387 aa17.37■□□□□ 0.37
CLN3-240ENST00000631023 TRIM36Q9NQ86 728 aa17.37■□□□□ 0.37
CLN3-240ENST00000631023 HIF1ANQ9NWT6 349 aa17.37■□□□□ 0.37
CLN3-240ENST00000631023 MIOXQ9UGB7 285 aa17.37■□□□□ 0.37
CLN3-240ENST00000631023 PLPP2O43688 288 aa17.36■□□□□ 0.37
CLN3-240ENST00000631023 FOXH1O75593 365 aa17.36■□□□□ 0.37
CLN3-240ENST00000631023 HOXB4P17483 251 aaPredicted RBP17.36■□□□□ 0.37
CLN3-240ENST00000631023 HNF1AP20823 631 aa17.36■□□□□ 0.37
CLN3-240ENST00000631023 GNG3P63215 75 aa17.36■□□□□ 0.37
CLN3-240ENST00000631023 MRPL28Q13084 256 aaKnown RBP17.36■□□□□ 0.37
CLN3-240ENST00000631023 ZNF404Q494X3 552 aa17.36■□□□□ 0.37
CLN3-240ENST00000631023 FAM76BQ5HYJ3 339 aa17.36■□□□□ 0.37
CLN3-240ENST00000631023 CEP78Q5JTW2 689 aa17.36■□□□□ 0.37
CLN3-240ENST00000631023 CLVS2Q5SYC1 327 aa17.36■□□□□ 0.37
CLN3-240ENST00000631023 TMEM244Q5VVB8 128 aa17.36■□□□□ 0.37
CLN3-240ENST00000631023 MOB3CQ70IA8 216 aa17.36■□□□□ 0.37
CLN3-240ENST00000631023 OR14K1Q8NGZ2 314 aa17.36■□□□□ 0.37
CLN3-240ENST00000631023 HAVCR2Q8TDQ0 301 aa17.36■□□□□ 0.37
CLN3-240ENST00000631023 TFAP2CQ92754 450 aa17.36■□□□□ 0.37
CLN3-240ENST00000631023 PELI1Q96FA3 418 aa17.36■□□□□ 0.37
CLN3-240ENST00000631023 TMEM246Q9BRR3 403 aa17.36■□□□□ 0.37
CLN3-240ENST00000631023 JAM3Q9BX67 310 aa17.36■□□□□ 0.37
CLN3-240ENST00000631023 BEX2Q9BXY8 128 aa17.36■□□□□ 0.37
CLN3-240ENST00000631023 PLEKHA1Q9HB21 404 aa17.36■□□□□ 0.37
CLN3-240ENST00000631023 OR5B21A6NL26 309 aa17.36■□□□□ 0.37
CLN3-240ENST00000631023 CEACAM18A8MTB9 384 aa17.36■□□□□ 0.37
CLN3-240ENST00000631023 CDIPTO14735 213 aa17.36■□□□□ 0.37
CLN3-240ENST00000631023 GNAO1P09471 354 aa17.36■□□□□ 0.37
CLN3-240ENST00000631023 THBS2P35442 1172 aa17.36■□□□□ 0.37
CLN3-240ENST00000631023 GPM6AP51674 278 aa17.36■□□□□ 0.37
CLN3-240ENST00000631023 CCR9P51686 369 aa17.36■□□□□ 0.37
CLN3-240ENST00000631023 PLCXD3Q63HM9 321 aa17.36■□□□□ 0.37
CLN3-240ENST00000631023 NLRC3Q7RTR2 1065 aa17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms