RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 AVPI1Q5T686 147 aa15.28■□□□□ 0.04
CLN3-239ENST00000628023 ZBTB37Q5TC79 503 aa15.28■□□□□ 0.04
CLN3-239ENST00000628023 OR2G6Q5TZ20 316 aa15.28■□□□□ 0.04
CLN3-239ENST00000628023 PRAMEF6Q5VXH4 476 aa15.28■□□□□ 0.04
CLN3-239ENST00000628023 FDX2Q6P4F2 183 aa15.28■□□□□ 0.04
CLN3-239ENST00000628023 KCTD8Q6ZWB6 473 aa15.28■□□□□ 0.04
CLN3-239ENST00000628023 EGFL6Q8IUX8 553 aa15.28■□□□□ 0.04
CLN3-239ENST00000628023 CELF2-AS1Q8N7Q2 184 aa15.28■□□□□ 0.04
CLN3-239ENST00000628023 OR11L1Q8NGX0 322 aa15.28■□□□□ 0.04
CLN3-239ENST00000628023 MYDGFQ969H8 173 aa15.28■□□□□ 0.04
CLN3-239ENST00000628023 ZNF649Q9BS31 505 aa15.28■□□□□ 0.04
CLN3-239ENST00000628023 NARFLQ9H6Q4 476 aa15.28■□□□□ 0.04
CLN3-239ENST00000628023 FN3KRPQ9HA64 309 aa15.28■□□□□ 0.04
CLN3-239ENST00000628023 GCM1Q9NP62 436 aa15.28■□□□□ 0.04
CLN3-239ENST00000628023 TMEM106BQ9NUM4 274 aa15.28■□□□□ 0.04
CLN3-239ENST00000628023 UFSP2Q9NUQ7 469 aa15.28■□□□□ 0.04
CLN3-239ENST00000628023 FRRS1LQ9P0K9 344 aa15.28■□□□□ 0.04
CLN3-239ENST00000628023 TPRKBQ9Y3C4 175 aa15.28■□□□□ 0.04
CLN3-239ENST00000628023 MPC1Q9Y5U8 109 aa15.28■□□□□ 0.04
CLN3-239ENST00000628023 A0A1B0GTI1 187 aa15.27■□□□□ 0.04
CLN3-239ENST00000628023 ISPDA4D126 451 aa15.27■□□□□ 0.04
CLN3-239ENST00000628023 A6NLC8 198 aa15.27■□□□□ 0.04
CLN3-239ENST00000628023 LRRC30A6NM36 301 aa15.27■□□□□ 0.04
CLN3-239ENST00000628023 VWC2LB2RUY7 222 aa15.27■□□□□ 0.04
CLN3-239ENST00000628023 GRPP07492 148 aa15.27■□□□□ 0.04
CLN3-239ENST00000628023 CCDC159P0C7I6 412 aa15.27■□□□□ 0.04
CLN3-239ENST00000628023 IRF2P14316 349 aa15.27■□□□□ 0.04
CLN3-239ENST00000628023 ZNF12P17014 697 aa15.27■□□□□ 0.04
CLN3-239ENST00000628023 CCL1P22362 96 aa15.27■□□□□ 0.04
CLN3-239ENST00000628023 CCR9P51686 369 aa15.27■□□□□ 0.04
CLN3-239ENST00000628023 MVKQ03426 396 aa15.27■□□□□ 0.04
CLN3-239ENST00000628023 MAB21L1Q13394 359 aa15.27■□□□□ 0.04
CLN3-239ENST00000628023 CHRFAM7AQ494W8 412 aa15.27■□□□□ 0.04
CLN3-239ENST00000628023 TMEM244Q5VVB8 128 aa15.27■□□□□ 0.04
CLN3-239ENST00000628023 ZNF676Q8N7Q3 588 aa15.27■□□□□ 0.04
CLN3-239ENST00000628023 CCDC54Q8NEL0 328 aa15.27■□□□□ 0.04
CLN3-239ENST00000628023 OR14K1Q8NGZ2 314 aa15.27■□□□□ 0.04
CLN3-239ENST00000628023 ZNF420Q8TAQ5 688 aaPredicted RBP15.27■□□□□ 0.04
CLN3-239ENST00000628023 HPS1Q92902 700 aa15.27■□□□□ 0.04
CLN3-239ENST00000628023 RAB1CQ92928 201 aa15.27■□□□□ 0.04
CLN3-239ENST00000628023 RTL8AQ9BWD3 113 aa15.27■□□□□ 0.04
CLN3-239ENST00000628023 COMMD4Q9H0A8 199 aa15.27■□□□□ 0.04
CLN3-239ENST00000628023 CLEC2DQ9UHP7 191 aa15.27■□□□□ 0.04
CLN3-239ENST00000628023 V9GYS6 101 aa15.27■□□□□ 0.04
CLN3-239ENST00000628023 DHRS7CA6NNS2 312 aa15.26■□□□□ 0.03
CLN3-239ENST00000628023 IFNL4K9M1U5 179 aa15.26■□□□□ 0.03
CLN3-239ENST00000628023 C21orf33P30042 268 aaPredicted RBP15.26■□□□□ 0.03
CLN3-239ENST00000628023 GATA4P43694 442 aa15.26■□□□□ 0.03
CLN3-239ENST00000628023 CHN2P52757 468 aa15.26■□□□□ 0.03
CLN3-239ENST00000628023 LOXL1Q08397 574 aaPredicted RBP15.26■□□□□ 0.03
CLN3-239ENST00000628023 HNRNPA0Q13151 305 aaKnown RBP15.26■□□□□ 0.03
CLN3-239ENST00000628023 CEP78Q5JTW2 689 aa15.26■□□□□ 0.03
CLN3-239ENST00000628023 PLCXD3Q63HM9 321 aa15.26■□□□□ 0.03
CLN3-239ENST00000628023 MOB3CQ70IA8 216 aa15.26■□□□□ 0.03
CLN3-239ENST00000628023 RDH10Q8IZV5 341 aa15.26■□□□□ 0.03
CLN3-239ENST00000628023 PLPP7Q8NBV4 271 aa15.26■□□□□ 0.03
CLN3-239ENST00000628023 OR52N1Q8NH53 320 aa15.26■□□□□ 0.03
CLN3-239ENST00000628023 GATAD2BQ8WXI9 593 aa15.26■□□□□ 0.03
CLN3-239ENST00000628023 ERGIC1Q969X5 290 aa15.26■□□□□ 0.03
CLN3-239ENST00000628023 RNF166Q96A37 237 aaPredicted RBP15.26■□□□□ 0.03
CLN3-239ENST00000628023 PPP1R3EQ9H7J1 279 aa15.26■□□□□ 0.03
CLN3-239ENST00000628023 TRIM36Q9NQ86 728 aa15.26■□□□□ 0.03
CLN3-239ENST00000628023 ERGIC3Q9Y282 383 aa15.26■□□□□ 0.03
CLN3-239ENST00000628023 WIPI2Q9Y4P8 454 aa15.26■□□□□ 0.03
CLN3-239ENST00000628023 TANC2Q9HCD6 1990 aa15.25■□□□□ 0.03
CLN3-239ENST00000628023 IGHV4-61A0A0C4DH41 118 aa15.25■□□□□ 0.03
CLN3-239ENST00000628023 TRBV2A0A0J9YWF9 115 aa15.25■□□□□ 0.03
CLN3-239ENST00000628023 hCG_1807616A0A1W2PRN6 198 aa15.25■□□□□ 0.03
CLN3-239ENST00000628023 A6NIN4 97 aa15.25■□□□□ 0.03
CLN3-239ENST00000628023 TMEM212A6NML5 194 aa15.25■□□□□ 0.03
CLN3-239ENST00000628023 E9PI62 339 aa15.25■□□□□ 0.03
CLN3-239ENST00000628023 CDK1P06493 297 aa15.25■□□□□ 0.03
CLN3-239ENST00000628023 TGM4P49221 684 aa15.25■□□□□ 0.03
CLN3-239ENST00000628023 CDH15P55291 814 aa15.25■□□□□ 0.03
CLN3-239ENST00000628023 MPPED2Q15777 294 aa15.25■□□□□ 0.03
CLN3-239ENST00000628023 TMEM249Q2WGJ8 235 aa15.25■□□□□ 0.03
CLN3-239ENST00000628023 C1orf87Q8N0U7 546 aa15.25■□□□□ 0.03
CLN3-239ENST00000628023 OR5AK2Q8NH90 309 aa15.25■□□□□ 0.03
CLN3-239ENST00000628023 ITPKCQ96DU7 683 aa15.25■□□□□ 0.03
CLN3-239ENST00000628023 RNF170Q96K19 258 aa15.25■□□□□ 0.03
CLN3-239ENST00000628023 RASSF4Q9H2L5 321 aa15.25■□□□□ 0.03
CLN3-239ENST00000628023 FKBP14Q9NWM8 211 aa15.25■□□□□ 0.03
CLN3-239ENST00000628023 DCAF16Q9NXF7 216 aa15.25■□□□□ 0.03
CLN3-239ENST00000628023 BLOC1S6Q9UL45 172 aa15.25■□□□□ 0.03
CLN3-239ENST00000628023 HHLA2Q9UM44 414 aa15.25■□□□□ 0.03
CLN3-239ENST00000628023 DYSFO75923 2080 aa15.24■□□□□ 0.03
CLN3-239ENST00000628023 LOC100289279A0A1B0GTE1 492 aa15.24■□□□□ 0.03
CLN3-239ENST00000628023 LRP5LA4QPB2 252 aa15.24■□□□□ 0.03
CLN3-239ENST00000628023 OR4C45A6NMZ5 311 aa15.24■□□□□ 0.03
CLN3-239ENST00000628023 RNF212BA8MTL3 300 aa15.24■□□□□ 0.03
CLN3-239ENST00000628023 CYB5R3P00387 301 aaPredicted RBP15.24■□□□□ 0.03
CLN3-239ENST00000628023 NRASP01111 189 aa15.24■□□□□ 0.03
CLN3-239ENST00000628023 ISG15P05161 165 aa15.24■□□□□ 0.03
CLN3-239ENST00000628023 ZNF20P17024 532 aa15.24■□□□□ 0.03
CLN3-239ENST00000628023 GTF2A1P52655 376 aaPredicted RBP15.24■□□□□ 0.03
CLN3-239ENST00000628023 CCDC58Q4VC31 144 aa15.24■□□□□ 0.03
CLN3-239ENST00000628023 CLVS2Q5SYC1 327 aa15.24■□□□□ 0.03
CLN3-239ENST00000628023 OR13C3Q8NGS6 347 aa15.24■□□□□ 0.03
CLN3-239ENST00000628023 HPSE2Q8WWQ2 592 aa15.24■□□□□ 0.03
CLN3-239ENST00000628023 OR5P3Q8WZ94 311 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms