RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 Q8TCH9 128 aa17.12■□□□□ 0.33
PTCD3-220ENST00000627371 RAB1CQ92928 201 aa17.12■□□□□ 0.33
PTCD3-220ENST00000627371 CNBD2Q96M20 576 aa17.12■□□□□ 0.33
PTCD3-220ENST00000627371 MICU1Q9BPX6 476 aa17.12■□□□□ 0.33
PTCD3-220ENST00000627371 SCN3BQ9NY72 215 aa17.12■□□□□ 0.33
PTCD3-220ENST00000627371 WIPI2Q9Y4P8 454 aa17.12■□□□□ 0.33
PTCD3-220ENST00000627371 CSPG4Q6UVK1 2322 aa17.12■□□□□ 0.33
PTCD3-220ENST00000627371 E9PI62 339 aa17.11■□□□□ 0.33
PTCD3-220ENST00000627371 TMEM178BH3BS89 294 aa17.11■□□□□ 0.33
PTCD3-220ENST00000627371 CCDC159P0C7I6 412 aa17.11■□□□□ 0.33
PTCD3-220ENST00000627371 ZNF12P17014 697 aa17.11■□□□□ 0.33
PTCD3-220ENST00000627371 C21orf33P30042 268 aaPredicted RBP17.11■□□□□ 0.33
PTCD3-220ENST00000627371 PMELP40967 661 aa17.11■□□□□ 0.33
PTCD3-220ENST00000627371 CHN2P52757 468 aa17.11■□□□□ 0.33
PTCD3-220ENST00000627371 MPPED2Q15777 294 aa17.11■□□□□ 0.33
PTCD3-220ENST00000627371 AVPI1Q5T686 147 aa17.11■□□□□ 0.33
PTCD3-220ENST00000627371 TMEM42Q69YG0 159 aa17.11■□□□□ 0.33
PTCD3-220ENST00000627371 PEG10Q86TG7 708 aaKnown RBP17.11■□□□□ 0.33
PTCD3-220ENST00000627371 WDR86Q86TI4 376 aa17.11■□□□□ 0.33
PTCD3-220ENST00000627371 RDH10Q8IZV5 341 aa17.11■□□□□ 0.33
PTCD3-220ENST00000627371 HPSE2Q8WWQ2 592 aa17.11■□□□□ 0.33
PTCD3-220ENST00000627371 OR5P3Q8WZ94 311 aa17.11■□□□□ 0.33
PTCD3-220ENST00000627371 HPS1Q92902 700 aa17.11■□□□□ 0.33
PTCD3-220ENST00000627371 RTL8AQ9BWD3 113 aa17.11■□□□□ 0.33
PTCD3-220ENST00000627371 FN3KRPQ9HA64 309 aa17.11■□□□□ 0.33
PTCD3-220ENST00000627371 UFSP2Q9NUQ7 469 aa17.11■□□□□ 0.33
PTCD3-220ENST00000627371 NPTNQ9Y639 398 aa17.11■□□□□ 0.33
PTCD3-220ENST00000627371 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP17.11■□□□□ 0.332e-8■■■■■ 33.2
PTCD3-220ENST00000627371 TLN2Q9Y4G6 2542 aa17.11■□□□□ 0.33
PTCD3-220ENST00000627371 LRP5LA4QPB2 252 aa17.1■□□□□ 0.33
PTCD3-220ENST00000627371 LRRC30A6NM36 301 aa17.1■□□□□ 0.33
PTCD3-220ENST00000627371 H3BSH0 61 aa17.1■□□□□ 0.33
PTCD3-220ENST00000627371 CDK1P06493 297 aa17.1■□□□□ 0.33
PTCD3-220ENST00000627371 RBMXP38159 391 aaKnown RBP17.1■□□□□ 0.33
PTCD3-220ENST00000627371 TMEM249Q2WGJ8 235 aa17.1■□□□□ 0.33
PTCD3-220ENST00000627371 OR11L1Q8NGX0 322 aa17.1■□□□□ 0.33
PTCD3-220ENST00000627371 SMR3AQ99954 134 aa17.1■□□□□ 0.33
PTCD3-220ENST00000627371 FGF23Q9GZV9 251 aaPredicted RBP17.1■□□□□ 0.33
PTCD3-220ENST00000627371 PLEKHA1Q9HB21 404 aa17.1■□□□□ 0.33
PTCD3-220ENST00000627371 TPRKBQ9Y3C4 175 aa17.1■□□□□ 0.33
PTCD3-220ENST00000627371 TMEM210A6NLX4 147 aa17.09■□□□□ 0.33
PTCD3-220ENST00000627371 TMEM212A6NML5 194 aa17.09■□□□□ 0.33
PTCD3-220ENST00000627371 PTGES3LE9PB15 166 aa17.09■□□□□ 0.33
PTCD3-220ENST00000627371 WNT9BO14905 357 aa17.09■□□□□ 0.33
PTCD3-220ENST00000627371 CYB5R3P00387 301 aaPredicted RBP17.09■□□□□ 0.33
PTCD3-220ENST00000627371 NRASP01111 189 aa17.09■□□□□ 0.33
PTCD3-220ENST00000627371 IGHV2-70P01814 119 aa17.09■□□□□ 0.33
PTCD3-220ENST00000627371 GRPP07492 148 aa17.09■□□□□ 0.33
PTCD3-220ENST00000627371 IRF2P14316 349 aa17.09■□□□□ 0.33
PTCD3-220ENST00000627371 THBS2P35442 1172 aa17.09■□□□□ 0.33
PTCD3-220ENST00000627371 GTF2A1P52655 376 aaPredicted RBP17.09■□□□□ 0.33
PTCD3-220ENST00000627371 CDH15P55291 814 aa17.09■□□□□ 0.33
PTCD3-220ENST00000627371 SLC35A2P78381 396 aa17.09■□□□□ 0.33
PTCD3-220ENST00000627371 ZNF154Q13106 437 aa17.09■□□□□ 0.33
PTCD3-220ENST00000627371 CEACAM21Q3KPI0 293 aa17.09■□□□□ 0.33
PTCD3-220ENST00000627371 CCDC58Q4VC31 144 aa17.09■□□□□ 0.33
PTCD3-220ENST00000627371 CEP78Q5JTW2 689 aa17.09■□□□□ 0.33
PTCD3-220ENST00000627371 CLVS2Q5SYC1 327 aa17.09■□□□□ 0.33
PTCD3-220ENST00000627371 RPL22L1Q6P5R6 122 aaKnown RBP17.09■□□□□ 0.33
PTCD3-220ENST00000627371 LURAP1LQ8IV03 231 aa17.09■□□□□ 0.33
PTCD3-220ENST00000627371 C1orf87Q8N0U7 546 aa17.09■□□□□ 0.33
PTCD3-220ENST00000627371 ZNF676Q8N7Q3 588 aa17.09■□□□□ 0.33
PTCD3-220ENST00000627371 ZNF485Q8NCK3 441 aa17.09■□□□□ 0.33
PTCD3-220ENST00000627371 OR1M1Q8NGA1 313 aa17.09■□□□□ 0.33
PTCD3-220ENST00000627371 CLDND2Q8NHS1 167 aa17.09■□□□□ 0.33
PTCD3-220ENST00000627371 RPS4Y2Q8TD47 263 aa17.09■□□□□ 0.33
PTCD3-220ENST00000627371 MYDGFQ969H8 173 aa17.09■□□□□ 0.33
PTCD3-220ENST00000627371 C10orf35Q96D05 121 aa17.09■□□□□ 0.33
PTCD3-220ENST00000627371 HIST1H2AAQ96QV6 131 aa17.09■□□□□ 0.33
PTCD3-220ENST00000627371 RASSF4Q9H2L5 321 aa17.09■□□□□ 0.33
PTCD3-220ENST00000627371 Q9H521 79 aa17.09■□□□□ 0.33
PTCD3-220ENST00000627371 PAK1IP1Q9NWT1 392 aaPredicted RBP17.09■□□□□ 0.33
PTCD3-220ENST00000627371 BABAM2Q9NXR7 383 aa17.09■□□□□ 0.33
PTCD3-220ENST00000627371 HHLA2Q9UM44 414 aa17.09■□□□□ 0.33
PTCD3-220ENST00000627371 A6NLC8 198 aa17.08■□□□□ 0.32
PTCD3-220ENST00000627371 MYL12BO14950 172 aa17.08■□□□□ 0.32
PTCD3-220ENST00000627371 ZFPL1O95159 310 aa17.08■□□□□ 0.32
PTCD3-220ENST00000627371 RPSAP08865 295 aaKnown RBP17.08■□□□□ 0.32
PTCD3-220ENST00000627371 BTG1P62324 171 aa17.08■□□□□ 0.32
PTCD3-220ENST00000627371 CDK5R1Q15078 307 aa17.08■□□□□ 0.32
PTCD3-220ENST00000627371 FAM76BQ5HYJ3 339 aa17.08■□□□□ 0.32
PTCD3-220ENST00000627371 RNLSQ5VYX0 342 aa17.08■□□□□ 0.32
PTCD3-220ENST00000627371 PLCXD3Q63HM9 321 aa17.08■□□□□ 0.32
PTCD3-220ENST00000627371 XAF1Q6GPH4 301 aa17.08■□□□□ 0.32
PTCD3-220ENST00000627371 MOB3CQ70IA8 216 aa17.08■□□□□ 0.32
PTCD3-220ENST00000627371 OR5AK2Q8NH90 309 aa17.08■□□□□ 0.32
PTCD3-220ENST00000627371 GATAD2BQ8WXI9 593 aa17.08■□□□□ 0.32
PTCD3-220ENST00000627371 RNF170Q96K19 258 aa17.08■□□□□ 0.32
PTCD3-220ENST00000627371 COMMD4Q9H0A8 199 aa17.08■□□□□ 0.32
PTCD3-220ENST00000627371 TLNRD1Q9H1K6 362 aa17.08■□□□□ 0.32
PTCD3-220ENST00000627371 NARFLQ9H6Q4 476 aa17.08■□□□□ 0.32
PTCD3-220ENST00000627371 TRIM36Q9NQ86 728 aa17.08■□□□□ 0.32
PTCD3-220ENST00000627371 C1orf123Q9NWV4 160 aa17.08■□□□□ 0.32
PTCD3-220ENST00000627371 PCDHGB5Q9Y5G0 923 aa17.08■□□□□ 0.32
PTCD3-220ENST00000627371 MALRD1Q5VYJ5 2156 aa17.08■□□□□ 0.32
PTCD3-220ENST00000627371 TRBV2A0A0J9YWF9 115 aa17.07■□□□□ 0.32
PTCD3-220ENST00000627371 A6NIN4 97 aa17.07■□□□□ 0.32
PTCD3-220ENST00000627371 OR5B21A6NL26 309 aa17.07■□□□□ 0.32
PTCD3-220ENST00000627371 DENRO43583 198 aaKnown RBP17.07■□□□□ 0.32
PTCD3-220ENST00000627371 LMX1BO60663 402 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms