RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 RBFOX1Q9NWB1 397 aaKnown RBP0.64□□□□□ -2.31
SCN1A-208ENST00000625916 A0A0G2JMP0 313 aa0.63□□□□□ -2.31
SCN1A-208ENST00000625916 TRBV11-1A0A0K0K1C0 115 aa0.63□□□□□ -2.31
SCN1A-208ENST00000625916 A0A0X1KG70 313 aa0.63□□□□□ -2.31
SCN1A-208ENST00000625916 A0A1W2PNM2 257 aa0.63□□□□□ -2.31
SCN1A-208ENST00000625916 MYBPHLA2RUH7 354 aa0.63□□□□□ -2.31
SCN1A-208ENST00000625916 GGTLC3B5MD39 225 aa0.63□□□□□ -2.31
SCN1A-208ENST00000625916 ANKRD65E5RJM6 399 aa0.63□□□□□ -2.31
SCN1A-208ENST00000625916 H0Y8G0 127 aa0.63□□□□□ -2.31
SCN1A-208ENST00000625916 PSPHP1O15172 72 aa0.63□□□□□ -2.31
SCN1A-208ENST00000625916 EIF3HO15372 352 aaKnown RBP eCLIP0.63□□□□□ -2.31
SCN1A-208ENST00000625916 RNF13O43567 381 aa0.63□□□□□ -2.31
SCN1A-208ENST00000625916 SLC16A7O60669 478 aa0.63□□□□□ -2.31
SCN1A-208ENST00000625916 SLC19A2O60779 497 aa0.63□□□□□ -2.31
SCN1A-208ENST00000625916 CCNB2O95067 398 aa0.63□□□□□ -2.31
SCN1A-208ENST00000625916 FARS2O95363 451 aaKnown RBP0.63□□□□□ -2.31
SCN1A-208ENST00000625916 CDS2O95674 445 aa0.63□□□□□ -2.31
SCN1A-208ENST00000625916 FTH1P02794 183 aa0.63□□□□□ -2.31
SCN1A-208ENST00000625916 SLC35G6P0C7Q6 338 aa0.63□□□□□ -2.31
SCN1A-208ENST00000625916 ZNF708P17019 499 aa0.63□□□□□ -2.31
SCN1A-208ENST00000625916 IL3RAP26951 378 aa0.63□□□□□ -2.31
SCN1A-208ENST00000625916 GTF2E2P29084 291 aaKnown RBP0.63□□□□□ -2.31
SCN1A-208ENST00000625916 PRSS3P35030 304 aa0.63□□□□□ -2.31
SCN1A-208ENST00000625916 MRPL19P49406 292 aaKnown RBP0.63□□□□□ -2.31
SCN1A-208ENST00000625916 SULT1E1P49888 294 aa0.63□□□□□ -2.31
SCN1A-208ENST00000625916 ATP5G2Q06055 141 aa0.63□□□□□ -2.31
SCN1A-208ENST00000625916 METAP1DQ6UB28 335 aaPredicted RBP0.63□□□□□ -2.31
SCN1A-208ENST00000625916 SPESP1Q6UW49 350 aa0.63□□□□□ -2.31
SCN1A-208ENST00000625916 TRMT10CQ7L0Y3 403 aaKnown RBP0.63□□□□□ -2.31
SCN1A-208ENST00000625916 FAM228AQ86W67 206 aa0.63□□□□□ -2.31
SCN1A-208ENST00000625916 CPNE9Q8IYJ1 553 aa0.63□□□□□ -2.31
SCN1A-208ENST00000625916 TTC29Q8NA56 475 aaPredicted RBP0.63□□□□□ -2.31
SCN1A-208ENST00000625916 SFXN5Q8TD22 340 aa0.63□□□□□ -2.31
SCN1A-208ENST00000625916 ZNF606Q8WXB4 792 aa0.63□□□□□ -2.31
SCN1A-208ENST00000625916 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP0.63□□□□□ -2.31
SCN1A-208ENST00000625916 OR5P3Q8WZ94 311 aa0.63□□□□□ -2.31
SCN1A-208ENST00000625916 ELMO1Q92556 727 aa0.63□□□□□ -2.31
SCN1A-208ENST00000625916 SLC38A4Q969I6 547 aa0.63□□□□□ -2.31
SCN1A-208ENST00000625916 RPEQ96AT9 228 aa0.63□□□□□ -2.31
SCN1A-208ENST00000625916 DYNLL2Q96FJ2 89 aa0.63□□□□□ -2.31
SCN1A-208ENST00000625916 C20orf166-AS1Q96NR2 134 aa0.63□□□□□ -2.31
SCN1A-208ENST00000625916 XPO6Q96QU8 1125 aaKnown RBP0.63□□□□□ -2.31
SCN1A-208ENST00000625916 PEBP4Q96S96 227 aa0.63□□□□□ -2.31
SCN1A-208ENST00000625916 HIGD2AQ9BW72 106 aa0.63□□□□□ -2.31
SCN1A-208ENST00000625916 CALN1Q9BXU9 219 aa0.63□□□□□ -2.31
SCN1A-208ENST00000625916 NT5C3AQ9H0P0 336 aa0.63□□□□□ -2.31
SCN1A-208ENST00000625916 CA10Q9NS85 328 aa0.63□□□□□ -2.31
SCN1A-208ENST00000625916 CLN6Q9NWW5 311 aa0.63□□□□□ -2.31
SCN1A-208ENST00000625916 COX16Q9P0S2 106 aa0.63□□□□□ -2.31
SCN1A-208ENST00000625916 ACOT9Q9Y305 439 aa0.63□□□□□ -2.31
SCN1A-208ENST00000625916 TRAPPC1Q9Y5R8 145 aa0.63□□□□□ -2.31
SCN1A-208ENST00000625916 FLG2Q5D862 2391 aaPredicted RBP0.62□□□□□ -2.31
SCN1A-208ENST00000625916 BAZ1BQ9UIG0 1483 aaKnown RBP0.62□□□□□ -2.31
SCN1A-208ENST00000625916 PRR14LQ5THK1 2151 aa0.62□□□□□ -2.31
SCN1A-208ENST00000625916 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP0.62□□□□□ -2.31
SCN1A-208ENST00000625916 IGKV1OR2-108A0A075B7D4 117 aa0.62□□□□□ -2.31
SCN1A-208ENST00000625916 TMEM72A0PK05 275 aa0.62□□□□□ -2.31
SCN1A-208ENST00000625916 TSPAN11A1L157 253 aa0.62□□□□□ -2.31
SCN1A-208ENST00000625916 MYL12BO14950 172 aa0.62□□□□□ -2.31
SCN1A-208ENST00000625916 CDH16O75309 829 aa0.62□□□□□ -2.31
SCN1A-208ENST00000625916 ENTPD6O75354 484 aa0.62□□□□□ -2.31
SCN1A-208ENST00000625916 RAB5AP20339 215 aa0.62□□□□□ -2.31
SCN1A-208ENST00000625916 OR1G1P47890 313 aa0.62□□□□□ -2.31
SCN1A-208ENST00000625916 NUDT2P50583 147 aa0.62□□□□□ -2.31
SCN1A-208ENST00000625916 ZNF83P51522 516 aa0.62□□□□□ -2.31
SCN1A-208ENST00000625916 AP1S2P56377 157 aa0.62□□□□□ -2.31
SCN1A-208ENST00000625916 TRDNQ13061 729 aa0.62□□□□□ -2.31
SCN1A-208ENST00000625916 TSC22D1Q15714 1073 aa0.62□□□□□ -2.31
SCN1A-208ENST00000625916 KLHL40Q2TBA0 621 aa0.62□□□□□ -2.31
SCN1A-208ENST00000625916 PCOTHQ58A44 107 aa0.62□□□□□ -2.31
SCN1A-208ENST00000625916 TMEM236Q5W0B7 351 aa0.62□□□□□ -2.31
SCN1A-208ENST00000625916 KCTD16Q68DU8 428 aa0.62□□□□□ -2.31
SCN1A-208ENST00000625916 TMEM25Q86YD3 366 aa0.62□□□□□ -2.31
SCN1A-208ENST00000625916 TBC1D21Q8IYX1 336 aa0.62□□□□□ -2.31
SCN1A-208ENST00000625916 ZFP62Q8NB50 900 aaPredicted RBP0.62□□□□□ -2.31
SCN1A-208ENST00000625916 OR1S1Q8NH92 325 aa0.62□□□□□ -2.31
SCN1A-208ENST00000625916 ITLN2Q8WWU7 325 aaPredicted RBP0.62□□□□□ -2.31
SCN1A-208ENST00000625916 RAB1CQ92928 201 aa0.62□□□□□ -2.31
SCN1A-208ENST00000625916 MRPL48Q96GC5 212 aaKnown RBP0.62□□□□□ -2.31
SCN1A-208ENST00000625916 SLC25A44Q96H78 314 aaPredicted RBP0.62□□□□□ -2.31
SCN1A-208ENST00000625916 TPD52L3Q96J77 140 aa0.62□□□□□ -2.31
SCN1A-208ENST00000625916 DERL3Q96Q80 235 aa0.62□□□□□ -2.31
SCN1A-208ENST00000625916 GPR21Q99679 349 aa0.62□□□□□ -2.31
SCN1A-208ENST00000625916 C20orf24Q9BUV8 137 aa0.62□□□□□ -2.31
SCN1A-208ENST00000625916 API5Q9BZZ5 524 aaKnown RBP0.62□□□□□ -2.31
SCN1A-208ENST00000625916 ACP6Q9NPH0 428 aa0.62□□□□□ -2.31
SCN1A-208ENST00000625916 FBXO8Q9NRD0 319 aa0.62□□□□□ -2.31
SCN1A-208ENST00000625916 UBN2Q6ZU65 1347 aa0.62□□□□□ -2.31
SCN1A-208ENST00000625916 MROH5Q6ZUA9 1318 aa0.62□□□□□ -2.31
SCN1A-208ENST00000625916 VWDEQ8N2E2 1590 aa0.62□□□□□ -2.31
SCN1A-208ENST00000625916 GOLGA8JA6NMD2 632 aa0.61□□□□□ -2.31
SCN1A-208ENST00000625916 IGLL5B9A064 214 aa0.61□□□□□ -2.31
SCN1A-208ENST00000625916 WBP4O75554 376 aaKnown RBP0.61□□□□□ -2.31
SCN1A-208ENST00000625916 CD160O95971 181 aa0.61□□□□□ -2.31
SCN1A-208ENST00000625916 PTHP01270 115 aa0.61□□□□□ -2.31
SCN1A-208ENST00000625916 IGHV3-53P01767 116 aa0.61□□□□□ -2.31
SCN1A-208ENST00000625916 CLTAP09496 248 aa0.61□□□□□ -2.31
SCN1A-208ENST00000625916 GOLGA8HP0CJ92 632 aa0.61□□□□□ -2.31
SCN1A-208ENST00000625916 P0DMU3 169 aa0.61□□□□□ -2.31
SCN1A-208ENST00000625916 FAM231AP0DMU4 169 aa0.61□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms