RNA–Protein interactions for RNA: ENST00000623056.3

LDB3-209, Transcript of LIM domain binding 3, humanhuman

TSL 5 BASIC

Gene LDB3, Length 2,314 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-209ENST00000623056 PTPMT1Q8WUK0 201 aaPredicted RBP12.47□□□□□ -0.41
LDB3-209ENST00000623056 BSCL2Q96G97 398 aaPredicted RBP12.47□□□□□ -0.41
LDB3-209ENST00000623056 SLC35B3Q9H1N7 401 aa12.47□□□□□ -0.41
LDB3-209ENST00000623056 OPA3Q9H6K4 179 aa12.47□□□□□ -0.41
LDB3-209ENST00000623056 CUTCQ9NTM9 273 aa12.47□□□□□ -0.41
LDB3-209ENST00000623056 TMEM131Q92545 1883 aa12.47□□□□□ -0.41
LDB3-209ENST00000623056 MASP2O00187 686 aa12.46□□□□□ -0.41
LDB3-209ENST00000623056 OR2C1O95371 312 aa12.46□□□□□ -0.41
LDB3-209ENST00000623056 OR13C7P0DN81 318 aa12.46□□□□□ -0.41
LDB3-209ENST00000623056 PGCP20142 388 aa12.46□□□□□ -0.41
LDB3-209ENST00000623056 CDX1P47902 265 aaPredicted RBP12.46□□□□□ -0.41
LDB3-209ENST00000623056 RAB1AP62820 205 aa12.46□□□□□ -0.41
LDB3-209ENST00000623056 RPUSD3Q6P087 351 aaKnown RBP12.46□□□□□ -0.41
LDB3-209ENST00000623056 KLHL24Q6TFL4 600 aa12.46□□□□□ -0.41
LDB3-209ENST00000623056 HIST2H3AQ71DI3 136 aa12.46□□□□□ -0.41
LDB3-209ENST00000623056 ZNF383Q8NA42 475 aa12.46□□□□□ -0.41
LDB3-209ENST00000623056 ADAMTS18Q8TE60 1221 aa12.46□□□□□ -0.41
LDB3-209ENST00000623056 SLAMF6Q96DU3 332 aa12.46□□□□□ -0.41
LDB3-209ENST00000623056 MMABQ96EY8 250 aaPredicted RBP12.46□□□□□ -0.41
LDB3-209ENST00000623056 GAL3ST4Q96RP7 486 aa12.46□□□□□ -0.41
LDB3-209ENST00000623056 OR8D2Q9GZM6 311 aa12.46□□□□□ -0.41
LDB3-209ENST00000623056 PNO1Q9NRX1 252 aaKnown RBP12.46□□□□□ -0.41
LDB3-209ENST00000623056 C19orf12Q9NSK7 152 aa12.46□□□□□ -0.41
LDB3-209ENST00000623056 TUBD1Q9UJT1 453 aa12.46□□□□□ -0.41
LDB3-209ENST00000623056 FBXO7Q9Y3I1 522 aa12.46□□□□□ -0.41
LDB3-209ENST00000623056 TMEM184BQ9Y519 407 aaPredicted RBP12.46□□□□□ -0.41
LDB3-209ENST00000623056 CDC14CA4D256 554 aa12.46□□□□□ -0.41
LDB3-209ENST00000623056 FRG2CA6NGY1 282 aa12.46□□□□□ -0.41
LDB3-209ENST00000623056 EPOPA6NHQ4 379 aa12.46□□□□□ -0.41
LDB3-209ENST00000623056 CRTAPO75718 401 aaPredicted RBP12.46□□□□□ -0.41
LDB3-209ENST00000623056 C1QL1O75973 258 aa12.46□□□□□ -0.41
LDB3-209ENST00000623056 POU2F2P09086 479 aa12.46□□□□□ -0.41
LDB3-209ENST00000623056 SEC11BP0C7V7 166 aa12.46□□□□□ -0.41
LDB3-209ENST00000623056 ITGA3P26006 1051 aa12.46□□□□□ -0.41
LDB3-209ENST00000623056 RPS10P46783 165 aaKnown RBP12.46□□□□□ -0.41
LDB3-209ENST00000623056 POLR2HP52434 150 aaKnown RBP12.46□□□□□ -0.41
LDB3-209ENST00000623056 TAS2R46P59540 309 aa12.46□□□□□ -0.41
LDB3-209ENST00000623056 DNM1P34Q6PK57 102 aa12.46□□□□□ -0.41
LDB3-209ENST00000623056 GALNTL5Q7Z4T8 443 aa12.46□□□□□ -0.41
LDB3-209ENST00000623056 OR5AS1Q8N127 324 aa12.46□□□□□ -0.41
LDB3-209ENST00000623056 OR51E1Q8TCB6 317 aa12.46□□□□□ -0.41
LDB3-209ENST00000623056 CHST5Q9GZS9 411 aa12.46□□□□□ -0.41
LDB3-209ENST00000623056 C14orf166Q9Y224 244 aaKnown RBP12.46□□□□□ -0.41
LDB3-209ENST00000623056 TNFRSF10CO14798 259 aa12.45□□□□□ -0.42
LDB3-209ENST00000623056 AHSA1O95433 338 aa12.45□□□□□ -0.42
LDB3-209ENST00000623056 NSA2O95478 260 aaKnown RBP12.45□□□□□ -0.42
LDB3-209ENST00000623056 SCGB1D2O95969 90 aa12.45□□□□□ -0.42
LDB3-209ENST00000623056 GALNSP34059 522 aa12.45□□□□□ -0.42
LDB3-209ENST00000623056 KIR2DL1P43626 348 aaPredicted RBP12.45□□□□□ -0.42
LDB3-209ENST00000623056 DHPSP49366 369 aaPredicted RBP12.45□□□□□ -0.42
LDB3-209ENST00000623056 SLC35A1P78382 337 aa12.45□□□□□ -0.42
LDB3-209ENST00000623056 LCN10Q6JVE6 187 aa12.45□□□□□ -0.42
LDB3-209ENST00000623056 ARMC6Q6NXE6 501 aa12.45□□□□□ -0.42
LDB3-209ENST00000623056 ZNF574Q6ZN55 896 aaPredicted RBP12.45□□□□□ -0.42
LDB3-209ENST00000623056 DBX2Q6ZNG2 339 aa12.45□□□□□ -0.42
LDB3-209ENST00000623056 ASB10Q8WXI3 467 aa12.45□□□□□ -0.42
LDB3-209ENST00000623056 SLAMF9Q96A28 289 aa12.45□□□□□ -0.42
LDB3-209ENST00000623056 SLC46A1Q96NT5 459 aa12.45□□□□□ -0.42
LDB3-209ENST00000623056 TCEAL2Q9H3H9 227 aaPredicted RBP12.45□□□□□ -0.42
LDB3-209ENST00000623056 PLEKHA2Q9HB19 425 aa12.45□□□□□ -0.42
LDB3-209ENST00000623056 WFDC1Q9HC57 220 aa12.45□□□□□ -0.42
LDB3-209ENST00000623056 PPP4R1LQ9P1A2 415 aa12.45□□□□□ -0.42
LDB3-209ENST00000623056 ATG2AQ2TAZ0 1938 aa12.45□□□□□ -0.42
LDB3-209ENST00000623056 A6NIZ1 184 aa12.45□□□□□ -0.42
LDB3-209ENST00000623056 GPR37O15354 613 aa12.45□□□□□ -0.42
LDB3-209ENST00000623056 CELA2BP08218 269 aaPredicted RBP12.45□□□□□ -0.42
LDB3-209ENST00000623056 S100A2P29034 98 aa12.45□□□□□ -0.42
LDB3-209ENST00000623056 IL12BP29460 328 aa12.45□□□□□ -0.42
LDB3-209ENST00000623056 ZNF84P51523 738 aa12.45□□□□□ -0.42
LDB3-209ENST00000623056 RAP1BP61224 184 aa12.45□□□□□ -0.42
LDB3-209ENST00000623056 RAP1AP62834 184 aa12.45□□□□□ -0.42
LDB3-209ENST00000623056 TDGQ13569 410 aa12.45□□□□□ -0.42
LDB3-209ENST00000623056 CLINT1Q14677 625 aa12.45□□□□□ -0.42
LDB3-209ENST00000623056 SURF2Q15527 256 aaPredicted RBP12.45□□□□□ -0.42
LDB3-209ENST00000623056 GGNBP1Q5YKI7 109 aa12.45□□□□□ -0.42
LDB3-209ENST00000623056 MR1Q95460 341 aa12.45□□□□□ -0.42
LDB3-209ENST00000623056 MRPL24Q96A35 216 aaKnown RBP12.45□□□□□ -0.42
LDB3-209ENST00000623056 SOX7Q9BT81 388 aa12.45□□□□□ -0.42
LDB3-209ENST00000623056 PLA2G2FQ9BZM2 168 aa12.45□□□□□ -0.42
LDB3-209ENST00000623056 NKX2-4Q9H2Z4 354 aa12.45□□□□□ -0.42
LDB3-209ENST00000623056 C2orf16Q68DN1 1984 aa12.45□□□□□ -0.42
LDB3-209ENST00000623056 PHF3Q92576 2039 aaKnown RBP12.44□□□□□ -0.42
LDB3-209ENST00000623056 NPIPA5E9PKD4 350 aa12.44□□□□□ -0.42
LDB3-209ENST00000623056 MS4A18H0YCH9 400 aa12.44□□□□□ -0.42
LDB3-209ENST00000623056 LMO1P25800 156 aa12.44□□□□□ -0.42
LDB3-209ENST00000623056 NDUFA6P56556 154 aa12.44□□□□□ -0.42
LDB3-209ENST00000623056 ACY1Q03154 408 aa12.44□□□□□ -0.42
LDB3-209ENST00000623056 MS4A18Q3C1V0 323 aa12.44□□□□□ -0.42
LDB3-209ENST00000623056 TMEM196Q5HYL7 178 aa12.44□□□□□ -0.42
LDB3-209ENST00000623056 TTLL10Q6ZVT0 673 aa12.44□□□□□ -0.42
LDB3-209ENST00000623056 TMEM156Q8N614 296 aa12.44□□□□□ -0.42
LDB3-209ENST00000623056 ZNF248Q8NDW4 579 aa12.44□□□□□ -0.42
LDB3-209ENST00000623056 OR10S1Q8NGN2 331 aa12.44□□□□□ -0.42
LDB3-209ENST00000623056 ADIPOR1Q96A54 375 aa12.44□□□□□ -0.42
LDB3-209ENST00000623056 MARS2Q96GW9 593 aaKnown RBP12.44□□□□□ -0.42
LDB3-209ENST00000623056 KCNK17Q96T54 332 aa12.44□□□□□ -0.42
LDB3-209ENST00000623056 GAS2L1Q99501 681 aaPredicted RBP12.44□□□□□ -0.42
LDB3-209ENST00000623056 GINS3Q9BRX5 216 aa12.44□□□□□ -0.42
LDB3-209ENST00000623056 PBDC1Q9BVG4 233 aa12.44□□□□□ -0.42
LDB3-209ENST00000623056 SH3BGRL3Q9H299 93 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms